View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17793_high_46 (Length: 356)
Name: NF17793_high_46
Description: NF17793
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17793_high_46 |
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| [»] scaffold0020 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 340; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 1 - 340
Target Start/End: Original strand, 20865402 - 20865741
Alignment:
| Q |
1 |
tgaataatatgcttgaaccatttcaaccaatataagcgttcggatttggacaaatgcagcatgacagtgccaacaataggcgtagtgtactgacagcttc |
100 |
Q |
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| T |
20865402 |
tgaataatatgcttgaaccatttcaaccaatataagcgttcggatttggacaaatgcagcatgacagtgccaacaataggcgtagtgtactgacagcttc |
20865501 |
T |
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| Q |
101 |
caatcaagcccaattgttttggtcggtcaggcccggattctaaaatttctatgaaactataatcacattaaagtagagaataaaagatgcaatatctcaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20865502 |
caatcaagcccaattgttttggtcggtcaggcccggattctaaaatttctatgaaactataatcacattaaagtagagaataaaagatgcaatatctcaa |
20865601 |
T |
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| Q |
201 |
attaattgataagagtatactcgtcagaatcaaatccataaaagtagtctggcatacctgcaatttgtcctctgtgaaatagtgatttactggaagttta |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20865602 |
attaattgataagagtatactcgtcagaatcaaatccataaaagtagtctggcatacctgcaatttgtcctctgtgaaatagtgatttactggaagttta |
20865701 |
T |
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| Q |
301 |
cggatttcctctgtcaaacggaagcattcaccgacatttt |
340 |
Q |
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| T |
20865702 |
cggatttcctctgtcaaacggaagcattcaccgacatttt |
20865741 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 226 - 340
Target Start/End: Complemental strand, 27401464 - 27401353
Alignment:
| Q |
226 |
agaatcaaatccataaaagtagtctggcatacctgcaatttgtcctctgtgaaatagtgatttactggaagtttacggatttcctctgtcaaacggaagc |
325 |
Q |
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| T |
27401464 |
agaatcaaatccataa---tagtctggcatacctccaatttgtcctctatggacctgtgatttactggaagtttgcggaattcctctgtcaaacggaagc |
27401368 |
T |
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| Q |
326 |
attcaccgacatttt |
340 |
Q |
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| T |
27401367 |
actcaccaacatttt |
27401353 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0020 (Bit Score: 92; Significance: 1e-44; HSPs: 2)
Name: scaffold0020
Description:
Target: scaffold0020; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 179 - 326
Target Start/End: Original strand, 134332 - 134479
Alignment:
| Q |
179 |
aataaaagatgcaatatctcaaattaattgataagagtatactcgtcagaatcaaatccataaaagtagtctggcatacctgcaatttgtcctctgtgaa |
278 |
Q |
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||||||||||||||||||| ||||||||||| |||||||||| |||||||||||||||| ||||| |||||||||||||| ||| ||||| |||| | |
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| T |
134332 |
aataaaagatgcaatatctaaaattaattgacaagagtatacatgtcagaatcaaatccagaaaagcagtctggcatacctccaaattgtctgctgttga |
134431 |
T |
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| Q |
279 |
atagtgatttactggaagtttacggatttcctctgtcaaacggaagca |
326 |
Q |
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| T |
134432 |
acagtgatttactggaagtttacggatttcctctgtcaaacgcaagca |
134479 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0020; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 49 - 93
Target Start/End: Original strand, 134192 - 134236
Alignment:
| Q |
49 |
gacaaatgcagcatgacagtgccaacaataggcgtagtgtactga |
93 |
Q |
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| T |
134192 |
gacaaatgcagcatgacagtgccaacaataggtgtagtatactga |
134236 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 253 - 340
Target Start/End: Complemental strand, 51506942 - 51506855
Alignment:
| Q |
253 |
catacctgcaatttgtcctctgtgaaatagtgatttactggaagtttacggatttcctctgtcaaacggaagcattcaccgacatttt |
340 |
Q |
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| T |
51506942 |
catacctccaatttgtcctctgtggacctgtgatttaccggaagtttacggaattcctctgtcaaacgaaagcactcaccaacatttt |
51506855 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 254 - 340
Target Start/End: Original strand, 30200115 - 30200201
Alignment:
| Q |
254 |
atacctgcaatttgtcctctgtgaaatagtgatttactggaagtttacggatttcctctgtcaaacggaagcattcaccgacatttt |
340 |
Q |
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|||||| |||||||||||||| | | |||||||||||||||||| |||| ||||||||||||||| ||||| || || ||||||| |
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| T |
30200115 |
atacctccaatttgtcctctgcagacttgtgatttactggaagtttgcggaattcctctgtcaaacgaaagcactcgccaacatttt |
30200201 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 44; Significance: 5e-16; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 245 - 332
Target Start/End: Complemental strand, 5178958 - 5178871
Alignment:
| Q |
245 |
tagtctggcatacctgcaatttgtcctctgtgaaatagtgatttactggaagtttacggatttcctctgtcaaacggaagcattcacc |
332 |
Q |
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| T |
5178958 |
tagtctggcatacctccaatttgtcctctatggacctgtgatttactgtaagtttccggaattcctctgtcaaatggaagcactcacc |
5178871 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 1 - 80
Target Start/End: Complemental strand, 5179107 - 5179028
Alignment:
| Q |
1 |
tgaataatatgcttgaaccatttcaaccaatataagcgttcggatttggacaaatgcagcatgacagtgccaacaatagg |
80 |
Q |
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|||||||||||||||||||| ||||| |||| ||| |||||||||||| ||| |||| ||||||||||| ||||||||| |
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| T |
5179107 |
tgaataatatgcttgaaccagttcaatcaatggaagtgttcggatttggccaattgcaacatgacagtgcgaacaatagg |
5179028 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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