View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17793_high_47 (Length: 355)
Name: NF17793_high_47
Description: NF17793
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17793_high_47 |
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Alignment Details
Target: chr8 (Bit Score: 314; Significance: 1e-177; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 11 - 340
Target Start/End: Original strand, 41807781 - 41808110
Alignment:
| Q |
11 |
gagaaaaagacaaagatttatcatgtaagatcctcaaaagaaatcaaaggtatatcttaacaaatggtaagaatggaccaactatgacatcattattatc |
110 |
Q |
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| T |
41807781 |
gagaaaaagacaaagatttatcatgtaagatcctcaaaagaaatcaaaggtagatcttaacaaatggtaagaatggaccaactatgacatcattattatc |
41807880 |
T |
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| Q |
111 |
aaaataatgcaaatcgaatttaaatttcctgcattgtctttagtttcctaagtttgttcacttactgtcattctttcttgtctaaaacagatagttcttt |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
41807881 |
aaaataatgcaaatcgaatttaaatttcctgcattgtctttagtttcctaagtttgttcacttactatcattctttcttgtctaaaacagatagttcttt |
41807980 |
T |
|
| Q |
211 |
caaactacaattatacaagagaatattttcttaatttctttagacttgtgatcagttggatattacacccaaaatatttatccattttatctatactgtt |
310 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41807981 |
caaactacaattatacaagacaatattttcttaatttctttagacttgtgatcaattggatattacacccaaaatatttatccattttatctatactgtt |
41808080 |
T |
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| Q |
311 |
taaataattacattttattgtgaaatagtt |
340 |
Q |
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| T |
41808081 |
taaataattacattttattgtgaaatagtt |
41808110 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 33 - 128
Target Start/End: Complemental strand, 42030808 - 42030701
Alignment:
| Q |
33 |
atgtaagatcctcaaaagaaatcaaaggtatatcttaacaaatg------------gtaagaatggaccaactatgacatcattattatcaaaataatgc |
120 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||| || ||||||||||||||||||||| | |
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| T |
42030808 |
atgtaagatcctcaaaagaaatcaaaggtagatcttaacaaatgggaattacgcatgtaagaatggaccaactgtggcatcattattatcaaaataatcc |
42030709 |
T |
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| Q |
121 |
aaatcgaa |
128 |
Q |
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|||||||| |
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| T |
42030708 |
aaatcgaa |
42030701 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 11 - 50
Target Start/End: Complemental strand, 42030864 - 42030825
Alignment:
| Q |
11 |
gagaaaaagacaaagatttatcatgtaagatcctcaaaag |
50 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
42030864 |
gagaaaaagacaaagatttatcatgtaagatcctcaaaag |
42030825 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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