View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17793_high_48 (Length: 350)

Name: NF17793_high_48
Description: NF17793
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17793_high_48
NF17793_high_48
[»] chr5 (29 HSPs)
chr5 (17-350)||(17143249-17143562)
chr5 (288-349)||(9368717-9368778)
chr5 (288-346)||(17016011-17016069)
chr5 (288-350)||(33337374-33337436)
chr5 (288-349)||(95402-95463)
chr5 (288-349)||(6919330-6919391)
chr5 (288-349)||(8081250-8081311)
chr5 (288-349)||(41666893-41666954)
chr5 (288-349)||(43117769-43117830)
chr5 (290-349)||(25258204-25258263)
chr5 (290-349)||(25321994-25322053)
chr5 (301-347)||(11896305-11896351)
chr5 (295-349)||(15480444-15480498)
chr5 (288-345)||(11896051-11896108)
chr5 (288-349)||(15590060-15590121)
chr5 (288-349)||(18333600-18333661)
chr5 (288-349)||(20510778-20510838)
chr5 (288-349)||(24270006-24270067)
chr5 (288-349)||(24346637-24346698)
chr5 (288-349)||(24531721-24531782)
chr5 (290-350)||(17352572-17352632)
chr5 (289-325)||(30770186-30770222)
chr5 (296-349)||(6413566-6413619)
chr5 (296-349)||(7133919-7133972)
chr5 (288-349)||(18885349-18885410)
chr5 (288-340)||(2062050-2062102)
chr5 (295-339)||(2985919-2985963)
chr5 (289-345)||(11896172-11896228)
chr5 (288-328)||(24528683-24528723)
[»] scaffold0692 (1 HSPs)
scaffold0692 (288-349)||(5655-5716)
[»] chr7 (21 HSPs)
chr7 (288-349)||(25620258-25620319)
chr7 (288-347)||(36277127-36277186)
chr7 (287-349)||(4886451-4886513)
chr7 (288-349)||(40746168-40746229)
chr7 (290-349)||(3519863-3519922)
chr7 (288-347)||(30727255-30727314)
chr7 (288-346)||(1596718-1596776)
chr7 (291-349)||(18826392-18826450)
chr7 (288-349)||(2315162-2315223)
chr7 (288-349)||(2404309-2404370)
chr7 (288-349)||(22574723-22574784)
chr7 (288-349)||(33996215-33996276)
chr7 (288-349)||(48661456-48661517)
chr7 (295-349)||(20305416-20305470)
chr7 (288-346)||(21861419-21861477)
chr7 (288-325)||(33834337-33834374)
chr7 (288-324)||(3519940-3519976)
chr7 (290-325)||(31892298-31892333)
chr7 (288-338)||(29469738-29469788)
chr7 (288-326)||(40898851-40898889)
chr7 (287-339)||(17948367-17948419)
[»] chr1 (22 HSPs)
chr1 (288-349)||(4112676-4112737)
chr1 (288-349)||(25713280-25713341)
chr1 (288-347)||(4112907-4112966)
chr1 (288-349)||(7307843-7307904)
chr1 (288-349)||(35772151-35772212)
chr1 (288-349)||(39348253-39348314)
chr1 (291-349)||(26173360-26173418)
chr1 (288-325)||(2859528-2859565)
chr1 (288-349)||(26177030-26177091)
chr1 (288-349)||(33156856-33156917)
chr1 (288-324)||(369779-369815)
chr1 (288-349)||(38733273-38733330)
chr1 (288-339)||(27413479-27413530)
chr1 (299-349)||(40524787-40524837)
chr1 (288-325)||(12325433-12325470)
chr1 (288-325)||(12376574-12376611)
chr1 (288-349)||(17208676-17208737)
chr1 (288-349)||(25145621-25145682)
chr1 (291-324)||(35892203-35892236)
chr1 (288-349)||(40189121-40189181)
chr1 (293-349)||(16163055-16163111)
chr1 (301-349)||(30369957-30370005)
[»] chr8 (24 HSPs)
chr8 (290-348)||(37868486-37868544)
chr8 (288-349)||(8084249-8084310)
chr8 (288-349)||(12688194-12688255)
chr8 (288-349)||(20301383-20301444)
chr8 (288-349)||(21088015-21088076)
chr8 (288-349)||(31197736-31197797)
chr8 (288-349)||(39960079-39960140)
chr8 (288-346)||(11232330-11232388)
chr8 (288-349)||(3157145-3157206)
chr8 (288-349)||(18004230-18004291)
chr8 (288-349)||(39052673-39052734)
chr8 (288-349)||(39052830-39052891)
chr8 (292-349)||(41790780-41790837)
chr8 (288-339)||(37867969-37868020)
chr8 (288-349)||(3157460-3157521)
chr8 (288-349)||(5675870-5675931)
chr8 (296-349)||(7669541-7669594)
chr8 (288-325)||(20094696-20094733)
chr8 (288-349)||(35682917-35682978)
chr8 (290-340)||(5589878-5589928)
chr8 (288-349)||(8466624-8466685)
chr8 (288-321)||(15797144-15797177)
chr8 (301-349)||(7289349-7289397)
chr8 (288-324)||(37868209-37868245)
[»] chr6 (13 HSPs)
chr6 (288-349)||(6400756-6400817)
chr6 (288-346)||(13353326-13353384)
chr6 (288-346)||(33796451-33796509)
chr6 (288-349)||(4868713-4868774)
chr6 (291-349)||(12330083-12330141)
chr6 (301-350)||(6237621-6237670)
chr6 (288-349)||(17147796-17147857)
chr6 (291-349)||(12648522-12648580)
chr6 (287-349)||(31961065-31961127)
chr6 (292-349)||(30256700-30256756)
chr6 (288-349)||(33494661-33494722)
chr6 (290-350)||(6542846-6542906)
chr6 (301-349)||(30849316-30849364)
[»] chr4 (16 HSPs)
chr4 (288-349)||(5398611-5398672)
chr4 (288-349)||(28245662-28245723)
chr4 (290-349)||(5398348-5398407)
chr4 (288-349)||(22231209-22231270)
chr4 (288-349)||(35796878-35796939)
chr4 (288-349)||(35819029-35819090)
chr4 (288-349)||(50543466-50543527)
chr4 (287-349)||(25324169-25324231)
chr4 (288-350)||(27634217-27634279)
chr4 (291-349)||(35645304-35645362)
chr4 (291-349)||(35645593-35645651)
chr4 (288-325)||(35788806-35788843)
chr4 (288-345)||(40717342-40717399)
chr4 (288-325)||(52559715-52559752)
chr4 (292-349)||(4645764-4645821)
chr4 (289-325)||(24974253-24974289)
[»] chr2 (13 HSPs)
chr2 (288-349)||(2029891-2029952)
chr2 (288-349)||(16419389-16419450)
chr2 (288-346)||(14466311-14466369)
chr2 (288-349)||(5711575-5711636)
chr2 (288-349)||(17525235-17525296)
chr2 (288-350)||(33606190-33606252)
chr2 (304-349)||(10523140-10523185)
chr2 (288-349)||(16533434-16533495)
chr2 (288-349)||(40149137-40149198)
chr2 (301-347)||(34893549-34893595)
chr2 (288-349)||(18607145-18607206)
chr2 (288-349)||(31001884-31001945)
chr2 (292-349)||(40379349-40379406)
[»] scaffold0519 (1 HSPs)
scaffold0519 (288-346)||(2041-2099)
[»] chr3 (14 HSPs)
chr3 (287-349)||(19954352-19954414)
chr3 (288-349)||(13574821-13574882)
chr3 (288-349)||(16239714-16239775)
chr3 (288-349)||(20327750-20327811)
chr3 (287-325)||(35038329-35038367)
chr3 (288-349)||(4155446-4155507)
chr3 (292-349)||(20303204-20303261)
chr3 (288-349)||(20303286-20303347)
chr3 (288-349)||(34992728-34992789)
chr3 (290-325)||(39683406-39683441)
chr3 (290-340)||(22729624-22729674)
chr3 (288-349)||(46139384-46139445)
chr3 (305-349)||(21888527-21888571)
chr3 (305-349)||(45828141-45828185)
[»] scaffold0045 (1 HSPs)
scaffold0045 (298-349)||(41117-41168)
[»] scaffold0041 (1 HSPs)
scaffold0041 (288-326)||(67395-67433)
[»] scaffold0129 (1 HSPs)
scaffold0129 (290-346)||(14428-14484)


Alignment Details
Target: chr5 (Bit Score: 224; Significance: 1e-123; HSPs: 29)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 17 - 350
Target Start/End: Complemental strand, 17143562 - 17143249
Alignment:
Q  17 atcagaggttttggatgttactgattgtgtgttgtcacaatgcacacaatcaaaattcaaatcaaaagtgatcccttgatatgggacatgttgacacata 116  Q
    ||||||||||||||||||||||| ||||||| ||||||||| |||||||||||||            |||||||||||||||||||||||||| ||||||    
T  17143562 atcagaggttttggatgttactggttgtgtgatgtcacaatacacacaatcaaaa------------gtgatcccttgatatgggacatgttggcacata 17143475  T
Q  117 agtgtaaagtgaaggaattgaattatatccagtcatatagtatgaatgagcttttaaaaatgaagggtagacaactcatgttttgagttgtattttaccc 216  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17143474 agtgtaaagtgaaggaattgaattatctccagtcatatagtatgaatgagcttttaaaaatgaagggtagacaactcatgttttgagttgtattttaccc 17143375  T
Q  217 tcaacttgatgaaaataaatccaattttgttcaatagcttgaatattttgactgcataactacgagattttactattgggcttagttcgtggacataaat 316  Q
    |||| |||||||||||||||||||||         ||||||||||||||||||||||||||| |||||| ||||||||| ||||||||||||||||||||    
T  17143374 tcaatttgatgaaaataaatccaatt--------gagcttgaatattttgactgcataactaagagattctactattggacttagttcgtggacataaat 17143283  T
Q  317 ggtgggtggttcaatagcggaaacttgatagcaa 350  Q
    ||||||||||||||||||||||||||||||||||    
T  17143282 ggtgggtggttcaatagcggaaacttgatagcaa 17143249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 288 - 349
Target Start/End: Complemental strand, 9368778 - 9368717
Alignment:
Q  288 actattgggcttagttcgtggacataaatggtgggtggttcaatagcggaaacttgatagca 349  Q
    ||||||||| || ||||||||||||| |||||||||||| ||||||||||||| ||||||||    
T  9368778 actattgggtttggttcgtggacatacatggtgggtggtccaatagcggaaacctgatagca 9368717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 288 - 346
Target Start/End: Original strand, 17016011 - 17016069
Alignment:
Q  288 actattgggcttagttcgtggacataaatggtgggtggttcaatagcggaaacttgata 346  Q
    |||||||| ||| |||||||||||||||||||||||||| | ||||||||||| |||||    
T  17016011 actattggacttggttcgtggacataaatggtgggtggtccgatagcggaaacctgata 17016069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 288 - 350
Target Start/End: Original strand, 33337374 - 33337436
Alignment:
Q  288 actattgggcttagttcgtggacataaatggtgggtggttcaatagcggaaacttgatagcaa 350  Q
    |||||||||||| |||||||||||||||||||||||||  | || |||||||| |||||||||    
T  33337374 actattgggcttggttcgtggacataaatggtgggtggcccgatggcggaaacctgatagcaa 33337436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 288 - 349
Target Start/End: Original strand, 95402 - 95463
Alignment:
Q  288 actattgggcttagttcgtggacataaatggtgggtggttcaatagcggaaacttgatagca 349  Q
    |||||||||||| |||||||||||||||||||||||||  | || |||||||| ||||||||    
T  95402 actattgggcttggttcgtggacataaatggtgggtggcccgatggcggaaacctgatagca 95463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 288 - 349
Target Start/End: Original strand, 6919330 - 6919391
Alignment:
Q  288 actattgggcttagttcgtggacataaatggtgggtggttcaatagcggaaacttgatagca 349  Q
    |||||||||||| |||||||||||||||||||| ||||| | | ||||||||| ||||||||    
T  6919330 actattgggcttggttcgtggacataaatggtgagtggtccgaaagcggaaacctgatagca 6919391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 288 - 349
Target Start/End: Original strand, 8081250 - 8081311
Alignment:
Q  288 actattgggcttagttcgtggacataaatggtgggtggttcaatagcggaaacttgatagca 349  Q
    |||||||||||| |||||||||||||||||||||||||| | |||| ||| || ||||||||    
T  8081250 actattgggcttggttcgtggacataaatggtgggtggtccgataggggatacctgatagca 8081311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 288 - 349
Target Start/End: Original strand, 41666893 - 41666954
Alignment:
Q  288 actattgggcttagttcgtggacataaatggtgggtggttcaatagcggaaacttgatagca 349  Q
    |||||||||||| |||||||||||||||||||||||||  | ||| ||||||| ||||||||    
T  41666893 actattgggcttggttcgtggacataaatggtgggtggcccgataacggaaacctgatagca 41666954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 288 - 349
Target Start/End: Complemental strand, 43117830 - 43117769
Alignment:
Q  288 actattgggcttagttcgtggacataaatggtgggtggttcaatagcggaaacttgatagca 349  Q
    ||||||| |||| ||||||||||||||||| |||||||| | ||||||||||| ||||||||    
T  43117830 actattgagcttggttcgtggacataaatgatgggtggtccgatagcggaaacctgatagca 43117769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 290 - 349
Target Start/End: Original strand, 25258204 - 25258263
Alignment:
Q  290 tattgggcttagttcgtggacataaatggtgggtggttcaatagcggaaacttgatagca 349  Q
    |||| ||||| |||||||||||||||| ||||||||| | ||||||||||| ||||||||    
T  25258204 tatttggcttggttcgtggacataaattgtgggtggtccgatagcggaaacctgatagca 25258263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 290 - 349
Target Start/End: Original strand, 25321994 - 25322053
Alignment:
Q  290 tattgggcttagttcgtggacataaatggtgggtggttcaatagcggaaacttgatagca 349  Q
    |||| ||||| |||||||||||||||| ||||||||| | ||||||||||| ||||||||    
T  25321994 tatttggcttggttcgtggacataaattgtgggtggtccgatagcggaaacctgatagca 25322053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 301 - 347
Target Start/End: Original strand, 11896305 - 11896351
Alignment:
Q  301 gttcgtggacataaatggtgggtggttcaatagcggaaacttgatag 347  Q
    |||||||||||||||||||||||||| | ||||||||||| ||||||    
T  11896305 gttcgtggacataaatggtgggtggtccgatagcggaaacctgatag 11896351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 295 - 349
Target Start/End: Complemental strand, 15480498 - 15480444
Alignment:
Q  295 ggcttagttcgtggacataaatggtgggtggttcaatagcggaaacttgatagca 349  Q
    ||||| |||| ||||||||||||||||||||  ||||||||||||| ||||||||    
T  15480498 ggcttggttcatggacataaatggtgggtggcccaatagcggaaacctgatagca 15480444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 288 - 345
Target Start/End: Original strand, 11896051 - 11896108
Alignment:
Q  288 actattgggcttagttcgtggacataaatggtgggtggttcaatagcggaaacttgat 345  Q
    ||||||||| || ||||| |||||||||||||||||||||| ||||| ||||| ||||    
T  11896051 actattgggtttggttcgcggacataaatggtgggtggttcgatagctgaaacctgat 11896108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 288 - 349
Target Start/End: Complemental strand, 15590121 - 15590060
Alignment:
Q  288 actattgggcttagttcgtggacataaatggtgggtggttcaatagcggaaacttgatagca 349  Q
    ||||||||| || |||||||||||||||||||| || |  | ||||||||||||||||||||    
T  15590121 actattgggtttggttcgtggacataaatggtgagtagcccgatagcggaaacttgatagca 15590060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 288 - 349
Target Start/End: Original strand, 18333600 - 18333661
Alignment:
Q  288 actattgggcttagttcgtggacataaatggtgggtggttcaatagcggaaacttgatagca 349  Q
    |||| ||||||| |||||||||||||||||||||||||  | |||||| |||| ||||||||    
T  18333600 actaatgggcttggttcgtggacataaatggtgggtggcccgatagcgaaaacctgatagca 18333661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 288 - 349
Target Start/End: Original strand, 20510778 - 20510838
Alignment:
Q  288 actattgggcttagttcgtggacataaatggtgggtggttcaatagcggaaacttgatagca 349  Q
    |||||||||||| |||||||||||||||||| ||||||  ||||||| ||||| ||||||||    
T  20510778 actattgggcttggttcgtggacataaatgg-gggtggcccaatagcagaaacctgatagca 20510838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 288 - 349
Target Start/End: Original strand, 24270006 - 24270067
Alignment:
Q  288 actattgggcttagttcgtggacataaatggtgggtggttcaatagcggaaacttgatagca 349  Q
    ||||||| |||| |||||||||||||||||||||||||  | ||| ||||||| ||||||||    
T  24270006 actattgagcttggttcgtggacataaatggtgggtggcccgataacggaaacctgatagca 24270067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 288 - 349
Target Start/End: Original strand, 24346637 - 24346698
Alignment:
Q  288 actattgggcttagttcgtggacataaatggtgggtggttcaatagcggaaacttgatagca 349  Q
    ||||||| |||| |||||||||||||||||||||||||  | ||| ||||||| ||||||||    
T  24346637 actattgagcttggttcgtggacataaatggtgggtggcccgataacggaaacctgatagca 24346698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 288 - 349
Target Start/End: Complemental strand, 24531782 - 24531721
Alignment:
Q  288 actattgggcttagttcgtggacataaatggtgggtggttcaatagcggaaacttgatagca 349  Q
    |||||||||||| ||||||||||||||||| |||||||||| ||| | ||||  ||||||||    
T  24531782 actattgggcttggttcgtggacataaatgttgggtggttcgataacagaaaactgatagca 24531721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 290 - 350
Target Start/End: Original strand, 17352572 - 17352632
Alignment:
Q  290 tattgggcttagttcgtggacataaatggtgggtggttcaatagcggaaacttgatagcaa 350  Q
    |||||||||| ||||||||||||||| ||| ||||   ||||||||||||| |||||||||    
T  17352572 tattgggcttggttcgtggacataaacggtaggtgacccaatagcggaaacctgatagcaa 17352632  T

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Target: chr5; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 289 - 325
Target Start/End: Original strand, 30770186 - 30770222
Alignment:
Q  289 ctattgggcttagttcgtggacataaatggtgggtgg 325  Q
    ||||||||||| |||||||||||||||||||||||||    
T  30770186 ctattgggcttggttcgtggacataaatggtgggtgg 30770222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 296 - 349
Target Start/End: Original strand, 6413566 - 6413619
Alignment:
Q  296 gcttagttcgtggacataaatggtgggtggttcaatagcggaaacttgatagca 349  Q
    |||| ||||||||||||||||||||||||| || |||| ||| || ||||||||    
T  6413566 gcttggttcgtggacataaatggtgggtggctcgatagtggatacctgatagca 6413619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 296 - 349
Target Start/End: Original strand, 7133919 - 7133972
Alignment:
Q  296 gcttagttcgtggacataaatggtgggtggttcaatagcggaaacttgatagca 349  Q
    ||||||||||||| ||||||||||| |||||   || |||||||||||||||||    
T  7133919 gcttagttcgtgggcataaatggtgagtggtctgattgcggaaacttgatagca 7133972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 288 - 349
Target Start/End: Complemental strand, 18885410 - 18885349
Alignment:
Q  288 actattgggcttagttcgtggacataaatggtgggtggttcaatagcggaaacttgatagca 349  Q
    |||||||||||| |||| | ||||||||||||||||||| | |||||| |||| ||| ||||    
T  18885410 actattgggcttggttcatagacataaatggtgggtggtccgatagcgaaaacctgaaagca 18885349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 288 - 340
Target Start/End: Original strand, 2062050 - 2062102
Alignment:
Q  288 actattgggcttagttcgtggacataaatggtgggtggttcaatagcggaaac 340  Q
    ||||||||| || ||||||||||||||||||||| |||  | |||||||||||    
T  2062050 actattgggtttggttcgtggacataaatggtggatggcccgatagcggaaac 2062102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 295 - 339
Target Start/End: Original strand, 2985919 - 2985963
Alignment:
Q  295 ggcttagttcgtggacataaatggtgggtggttcaatagcggaaa 339  Q
    ||||| |||||||||||||||||||||||||  | ||||||||||    
T  2985919 ggctttgttcgtggacataaatggtgggtggcccgatagcggaaa 2985963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 289 - 345
Target Start/End: Original strand, 11896172 - 11896228
Alignment:
Q  289 ctattgggcttagttcgtggacataaatggtgggtggttcaatagcggaaacttgat 345  Q
    ||||||||||| |||||| ||||||||||||||||| | | |||||| |||| ||||    
T  11896172 ctattgggcttggttcgttgacataaatggtgggtgatccgatagcgcaaacctgat 11896228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 288 - 328
Target Start/End: Complemental strand, 24528723 - 24528683
Alignment:
Q  288 actattgggcttagttcgtggacataaatggtgggtggttc 328  Q
    |||||| ||||| ||||||||||||||||| ||||||||||    
T  24528723 actattaggcttggttcgtggacataaatgttgggtggttc 24528683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0692 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: scaffold0692
Description:

Target: scaffold0692; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 288 - 349
Target Start/End: Original strand, 5655 - 5716
Alignment:
Q  288 actattgggcttagttcgtggacataaatggtgggtggttcaatagcggaaacttgatagca 349  Q
    |||||||||||| |||||||||||||||||||||||||| | ||||||||||| ||||||||    
T  5655 actattgggcttggttcgtggacataaatggtgggtggtccgatagcggaaacctgatagca 5716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 46; Significance: 3e-17; HSPs: 21)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 288 - 349
Target Start/End: Complemental strand, 25620319 - 25620258
Alignment:
Q  288 actattgggcttagttcgtggacataaatggtgggtggttcaatagcggaaacttgatagca 349  Q
    |||||||||||| |||||||||||||||||||||||||  ||||||||||||| ||||||||    
T  25620319 actattgggcttggttcgtggacataaatggtgggtggcccaatagcggaaacctgatagca 25620258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 288 - 347
Target Start/End: Original strand, 36277127 - 36277186
Alignment:
Q  288 actattgggcttagttcgtggacataaatggtgggtggttcaatagcggaaacttgatag 347  Q
    |||||||||||| |||||||||||||||||||||||||| | ||||||||||| ||||||    
T  36277127 actattgggcttggttcgtggacataaatggtgggtggtccgatagcggaaacctgatag 36277186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 287 - 349
Target Start/End: Complemental strand, 4886513 - 4886451
Alignment:
Q  287 tactattgggcttagttcgtggacataaatggtgggtggttcaatagcggaaacttgatagca 349  Q
    ||||||||||||| ||||||||||||||||||||||||| || ||||  ||||||||||||||    
T  4886513 tactattgggcttggttcgtggacataaatggtgggtggctcgatagtagaaacttgatagca 4886451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 288 - 349
Target Start/End: Original strand, 40746168 - 40746229
Alignment:
Q  288 actattgggcttagttcgtggacataaatggtgggtggttcaatagcggaaacttgatagca 349  Q
    |||||||||||| |||||||||||||||||||||||||||| ||| || |||| ||||||||    
T  40746168 actattgggcttggttcgtggacataaatggtgggtggttcgataacgaaaacctgatagca 40746229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 290 - 349
Target Start/End: Original strand, 3519863 - 3519922
Alignment:
Q  290 tattgggcttagttcgtggacataaatggtgggtggttcaatagcggaaacttgatagca 349  Q
    |||||||||| |||||||||||||||||||||||||  | ||||||||||| ||||||||    
T  3519863 tattgggcttggttcgtggacataaatggtgggtggcccgatagcggaaacctgatagca 3519922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 288 - 347
Target Start/End: Original strand, 30727255 - 30727314
Alignment:
Q  288 actattgggcttagttcgtggacataaatggtgggtggttcaatagcggaaacttgatag 347  Q
    |||||||||||||||| ||||| |||||||||||||||  ||||||||||||| ||||||    
T  30727255 actattgggcttagtttgtggatataaatggtgggtggcccaatagcggaaacctgatag 30727314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 288 - 346
Target Start/End: Complemental strand, 1596776 - 1596718
Alignment:
Q  288 actattgggcttagttcgtggacataaatggtgggtggttcaatagcggaaacttgata 346  Q
    |||||||||||| |||||||||||||||||||||||||  | ||||||||||| |||||    
T  1596776 actattgggcttggttcgtggacataaatggtgggtggcccgatagcggaaacctgata 1596718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 291 - 349
Target Start/End: Original strand, 18826392 - 18826450
Alignment:
Q  291 attgggcttagttcgtggacataaatggtgggtggttcaatagcggaaacttgatagca 349  Q
    ||||||||| |||||||| |||||||||||||||| || |||||||||| |||||||||    
T  18826392 attgggcttggttcgtggtcataaatggtgggtggctcgatagcggaaatttgatagca 18826450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 288 - 349
Target Start/End: Original strand, 2315162 - 2315223
Alignment:
Q  288 actattgggcttagttcgtggacataaatggtgggtggttcaatagcggaaacttgatagca 349  Q
    |||||||||||| |||||||||||||||||||||||||| | || |||||||  ||||||||    
T  2315162 actattgggcttggttcgtggacataaatggtgggtggtccgattgcggaaatctgatagca 2315223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 288 - 349
Target Start/End: Original strand, 2404309 - 2404370
Alignment:
Q  288 actattgggcttagttcgtggacataaatggtgggtggttcaatagcggaaacttgatagca 349  Q
    ||||||| |||| ||||||||||||||| ||| |||||| ||||||||||||| ||||||||    
T  2404309 actattgcgcttggttcgtggacataaacggtaggtggtccaatagcggaaacctgatagca 2404370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 288 - 349
Target Start/End: Complemental strand, 22574784 - 22574723
Alignment:
Q  288 actattgggcttagttcgtggacataaatggtgggtggttcaatagcggaaacttgatagca 349  Q
    |||||||||||| |||||| ||||||||||||||||||| | ||||| ||||| ||||||||    
T  22574784 actattgggcttggttcgtagacataaatggtgggtggtccgatagctgaaacctgatagca 22574723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 288 - 349
Target Start/End: Original strand, 33996215 - 33996276
Alignment:
Q  288 actattgggcttagttcgtggacataaatggtgggtggttcaatagcggaaacttgatagca 349  Q
    |||||||||||| |||||||||||||||||||||||||  | || |||||||| ||||||||    
T  33996215 actattgggcttggttcgtggacataaatggtgggtggcccgattgcggaaacctgatagca 33996276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 288 - 349
Target Start/End: Original strand, 48661456 - 48661517
Alignment:
Q  288 actattgggcttagttcgtggacataaatggtgggtggttcaatagcggaaacttgatagca 349  Q
    |||||||||||| |||||||||||||||||||||||||  | | ||||||||| ||||||||    
T  48661456 actattgggcttggttcgtggacataaatggtgggtggcccgaaagcggaaacctgatagca 48661517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 295 - 349
Target Start/End: Complemental strand, 20305470 - 20305416
Alignment:
Q  295 ggcttagttcgtggacataaatggtgggtggttcaatagcggaaacttgatagca 349  Q
    ||||| |||||||||||||||||||||||||  | ||||||||||| ||||||||    
T  20305470 ggcttggttcgtggacataaatggtgggtggcccgatagcggaaacctgatagca 20305416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 288 - 346
Target Start/End: Complemental strand, 21861477 - 21861419
Alignment:
Q  288 actattgggcttagttcgtggacataaatggtgggtggttcaatagcggaaacttgata 346  Q
    |||||| ||||| |||||||||||||||||||||||||  | ||||||||||| |||||    
T  21861477 actattaggcttggttcgtggacataaatggtgggtggcccgatagcggaaacctgata 21861419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 288 - 325
Target Start/End: Complemental strand, 33834374 - 33834337
Alignment:
Q  288 actattgggcttagttcgtggacataaatggtgggtgg 325  Q
    |||||||||||| |||||||||||||||||||||||||    
T  33834374 actattgggcttggttcgtggacataaatggtgggtgg 33834337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 288 - 324
Target Start/End: Original strand, 3519940 - 3519976
Alignment:
Q  288 actattgggcttagttcgtggacataaatggtgggtg 324  Q
    |||||||||||| ||||||||||||||||||||||||    
T  3519940 actattgggcttggttcgtggacataaatggtgggtg 3519976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 290 - 325
Target Start/End: Complemental strand, 31892333 - 31892298
Alignment:
Q  290 tattgggcttagttcgtggacataaatggtgggtgg 325  Q
    |||||||||| |||||||||||||||||||||||||    
T  31892333 tattgggcttggttcgtggacataaatggtgggtgg 31892298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 288 - 338
Target Start/End: Complemental strand, 29469788 - 29469738
Alignment:
Q  288 actattgggcttagttcgtggacataaatggtgggtggttcaatagcggaa 338  Q
    ||||||||||||  ||||||||||||||||||||||||  | |||||||||    
T  29469788 actattgggcttgattcgtggacataaatggtgggtggcccgatagcggaa 29469738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 288 - 326
Target Start/End: Original strand, 40898851 - 40898889
Alignment:
Q  288 actattgggcttagttcgtggacataaatggtgggtggt 326  Q
    ||||||| |||| ||||||||||||||||||||||||||    
T  40898851 actattgagcttggttcgtggacataaatggtgggtggt 40898889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 287 - 339
Target Start/End: Complemental strand, 17948419 - 17948367
Alignment:
Q  287 tactattgggcttagttcgtggacataaatggtgggtggttcaatagcggaaa 339  Q
    ||||||||||||| ||| ||||||| ||||||||||||||   ||||||||||    
T  17948419 tactattgggcttggtttgtggacacaaatggtgggtggtctgatagcggaaa 17948367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 46; Significance: 3e-17; HSPs: 22)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 288 - 349
Target Start/End: Original strand, 4112676 - 4112737
Alignment:
Q  288 actattgggcttagttcgtggacataaatggtgggtggttcaatagcggaaacttgatagca 349  Q
    |||||||||||| |||||| ||||||||||||||||||||| ||||||||||| ||||||||    
T  4112676 actattgggcttggttcgttgacataaatggtgggtggttcgatagcggaaacctgatagca 4112737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 288 - 349
Target Start/End: Complemental strand, 25713341 - 25713280
Alignment:
Q  288 actattgggcttagttcgtggacataaatggtgggtggttcaatagcggaaacttgatagca 349  Q
    |||||||||||| |||||||||||||||||||||||||  | ||||||||||||||||||||    
T  25713341 actattgggcttggttcgtggacataaatggtgggtggcccgatagcggaaacttgatagca 25713280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 288 - 347
Target Start/End: Original strand, 4112907 - 4112966
Alignment:
Q  288 actattgggcttagttcgtggacataaatggtgggtggttcaatagcggaaacttgatag 347  Q
    ||||||| |||| |||||||||||||||||||||||||| ||||||||||||| ||||||    
T  4112907 actattgagcttggttcgtggacataaatggtgggtggtccaatagcggaaacctgatag 4112966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 288 - 349
Target Start/End: Complemental strand, 7307904 - 7307843
Alignment:
Q  288 actattgggcttagttcgtggacataaatggtgggtggttcaatagcggaaacttgatagca 349  Q
    ||||||||  || |||||||||||||||||||||||||| ||||||||||||| ||||||||    
T  7307904 actattggatttggttcgtggacataaatggtgggtggtccaatagcggaaacctgatagca 7307843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 288 - 349
Target Start/End: Complemental strand, 35772212 - 35772151
Alignment:
Q  288 actattgggcttagttcgtggacataaatggtgggtggttcaatagcggaaacttgatagca 349  Q
    |||||||||||| |||||||||||||||||||||||||  | ||||||||||| ||||||||    
T  35772212 actattgggcttggttcgtggacataaatggtgggtggcccgatagcggaaacctgatagca 35772151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 288 - 349
Target Start/End: Original strand, 39348253 - 39348314
Alignment:
Q  288 actattgggcttagttcgtggacataaatggtgggtggttcaatagcggaaacttgatagca 349  Q
    |||||||||||| |||||||||||||||||||||||||| | |||| |||||| ||||||||    
T  39348253 actattgggcttggttcgtggacataaatggtgggtggtccgatagtggaaacctgatagca 39348314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 291 - 349
Target Start/End: Original strand, 26173360 - 26173418
Alignment:
Q  291 attgggcttagttcgtggacataaatggtgggtggttcaatagcggaaacttgatagca 349  Q
    |||| ||||||||||||||||||||||||||| ||| | ||||||||||| ||||||||    
T  26173360 attgagcttagttcgtggacataaatggtggggggtccgatagcggaaacctgatagca 26173418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 288 - 325
Target Start/End: Original strand, 2859528 - 2859565
Alignment:
Q  288 actattgggcttagttcgtggacataaatggtgggtgg 325  Q
    |||||||||||| |||||||||||||||||||||||||    
T  2859528 actattgggcttggttcgtggacataaatggtgggtgg 2859565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 288 - 349
Target Start/End: Complemental strand, 26177091 - 26177030
Alignment:
Q  288 actattgggcttagttcgtggacataaatggtgggtggttcaatagcggaaacttgatagca 349  Q
    |||||||| ||| ||||||||| |||||||||||||||| | ||||||||||  ||||||||    
T  26177091 actattggacttggttcgtggatataaatggtgggtggtccgatagcggaaatctgatagca 26177030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 288 - 349
Target Start/End: Complemental strand, 33156917 - 33156856
Alignment:
Q  288 actattgggcttagttcgtggacataaatggtgggtggttcaatagcggaaacttgatagca 349  Q
    ||||||||||||  |||||||||||||||||||| |||  | ||||||||||| ||||||||    
T  33156917 actattgggcttgattcgtggacataaatggtggatggcccgatagcggaaacctgatagca 33156856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 288 - 324
Target Start/End: Complemental strand, 369815 - 369779
Alignment:
Q  288 actattgggcttagttcgtggacataaatggtgggtg 324  Q
    |||||||||||| ||||||||||||||||||||||||    
T  369815 actattgggcttggttcgtggacataaatggtgggtg 369779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 288 - 349
Target Start/End: Complemental strand, 38733330 - 38733273
Alignment:
Q  288 actattgggcttagttcgtggacataaatggtgggtggttcaatagcggaaacttgatagca 349  Q
    ||||||||||||||||||| || |||||||||||||||    ||||||||||| ||||||||    
T  38733330 actattgggcttagttcgtagatataaatggtgggtgg----atagcggaaacctgatagca 38733273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 288 - 339
Target Start/End: Complemental strand, 27413530 - 27413479
Alignment:
Q  288 actattgggcttagttcgtggacataaatggtgggtggttcaatagcggaaa 339  Q
    ||||||||||||  ||||||||||||||||||||||||  | ||||||||||    
T  27413530 actattgggcttgattcgtggacataaatggtgggtggcccgatagcggaaa 27413479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 299 - 349
Target Start/End: Original strand, 40524787 - 40524837
Alignment:
Q  299 tagttcgtggacataaatggtgggtggttcaatagcggaaacttgatagca 349  Q
    ||||||||||||||||| ||||||||||   |||||| |||||||||||||    
T  40524787 tagttcgtggacataaacggtgggtggtctgatagcgaaaacttgatagca 40524837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 288 - 325
Target Start/End: Original strand, 12325433 - 12325470
Alignment:
Q  288 actattgggcttagttcgtggacataaatggtgggtgg 325  Q
    |||||||||||| ||||||||||||||||||| |||||    
T  12325433 actattgggcttggttcgtggacataaatggtaggtgg 12325470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 288 - 325
Target Start/End: Original strand, 12376574 - 12376611
Alignment:
Q  288 actattgggcttagttcgtggacataaatggtgggtgg 325  Q
    |||||||||||| ||||||||||||||||||| |||||    
T  12376574 actattgggcttggttcgtggacataaatggtaggtgg 12376611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 288 - 349
Target Start/End: Complemental strand, 17208737 - 17208676
Alignment:
Q  288 actattgggcttagttcgtggacataaatggtgggtggttcaatagcggaaacttgatagca 349  Q
    |||||||||||| ||  ||||| |||||||||||||||  | ||||||||||| ||||||||    
T  17208737 actattgggcttggtgggtggatataaatggtgggtggcccgatagcggaaacctgatagca 17208676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 288 - 349
Target Start/End: Original strand, 25145621 - 25145682
Alignment:
Q  288 actattgggcttagttcgtggacataaatggtgggtggttcaatagcggaaacttgatagca 349  Q
    ||||||| ||||  ||||||||||| ||||||||||||| | ||| ||||||| ||||||||    
T  25145621 actattgagcttgattcgtggacattaatggtgggtggtccgataacggaaacctgatagca 25145682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 291 - 324
Target Start/End: Complemental strand, 35892236 - 35892203
Alignment:
Q  291 attgggcttagttcgtggacataaatggtgggtg 324  Q
    |||||||||| |||||||||||||||||||||||    
T  35892236 attgggcttaattcgtggacataaatggtgggtg 35892203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 288 - 349
Target Start/End: Original strand, 40189121 - 40189181
Alignment:
Q  288 actattgggcttagttcgtggacataaatggtgggtggttcaatagcggaaacttgatagca 349  Q
    |||||||||||| || |||||| ||||||||||| |||  | ||||||||||||||||||||    
T  40189121 actattgggcttggtgcgtggatataaatggtggatgg-cctatagcggaaacttgatagca 40189181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 293 - 349
Target Start/End: Complemental strand, 16163111 - 16163055
Alignment:
Q  293 tgggcttagttcgtggacataaatggtgggtggttcaatagcggaaacttgatagca 349  Q
    ||||||| | ||||||||||||||||| |||||  | ||||||||||| ||||||||    
T  16163111 tgggcttggctcgtggacataaatggtaggtggcccgatagcggaaacctgatagca 16163055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 301 - 349
Target Start/End: Complemental strand, 30370005 - 30369957
Alignment:
Q  301 gttcgtggacataaatggtgggtggttcaatagcggaaacttgatagca 349  Q
    |||||||||||||||||||||||||  | |||| |||||| ||||||||    
T  30370005 gttcgtggacataaatggtgggtggcccgatagtggaaacctgatagca 30369957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 24)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 290 - 348
Target Start/End: Original strand, 37868486 - 37868544
Alignment:
Q  290 tattgggcttagttcgtggacataaatggtgggtggttcaatagcggaaacttgatagc 348  Q
    |||||||||| ||||||| |||||||||||||||||  |||||||||||||||||||||    
T  37868486 tattgggcttggttcgtgtacataaatggtgggtggcccaatagcggaaacttgatagc 37868544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 288 - 349
Target Start/End: Complemental strand, 8084310 - 8084249
Alignment:
Q  288 actattgggcttagttcgtggacataaatggtgggtggttcaatagcggaaacttgatagca 349  Q
    |||||||||||| |||||||||||||||||||||||| | |||||||| |||| ||||||||    
T  8084310 actattgggcttggttcgtggacataaatggtgggtgatccaatagcgaaaacctgatagca 8084249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 288 - 349
Target Start/End: Complemental strand, 12688255 - 12688194
Alignment:
Q  288 actattgggcttagttcgtggacataaatggtgggtggttcaatagcggaaacttgatagca 349  Q
    ||||||||||||||||||||||||||||||||||||||  ||||||  ||||| ||||||||    
T  12688255 actattgggcttagttcgtggacataaatggtgggtggcccaatagaagaaacctgatagca 12688194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 288 - 349
Target Start/End: Complemental strand, 20301444 - 20301383
Alignment:
Q  288 actattgggcttagttcgtggacataaatggtgggtggttcaatagcggaaacttgatagca 349  Q
    |||||||||||| |||||| ||||||||||||||||||| | ||||||||||| ||||||||    
T  20301444 actattgggcttggttcgtagacataaatggtgggtggtccgatagcggaaacctgatagca 20301383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 288 - 349
Target Start/End: Complemental strand, 21088076 - 21088015
Alignment:
Q  288 actattgggcttagttcgtggacataaatggtgggtggttcaatagcggaaacttgatagca 349  Q
    |||||||||||| |||||| ||||||||||||||||||| | ||||||||||| ||||||||    
T  21088076 actattgggcttggttcgtagacataaatggtgggtggtccgatagcggaaacctgatagca 21088015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 288 - 349
Target Start/End: Complemental strand, 31197797 - 31197736
Alignment:
Q  288 actattgggcttagttcgtggacataaatggtgggtggttcaatagcggaaacttgatagca 349  Q
    ||||||| |||| |||||||||||||||||||||||||| | ||||||||||| ||||||||    
T  31197797 actattgagcttggttcgtggacataaatggtgggtggtccgatagcggaaacctgatagca 31197736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 288 - 349
Target Start/End: Complemental strand, 39960140 - 39960079
Alignment:
Q  288 actattgggcttagttcgtggacataaatggtgggtggttcaatagcggaaacttgatagca 349  Q
    |||||||||||| ||||||||||||||||||||||| | || ||||||||||| ||||||||    
T  39960140 actattgggcttggttcgtggacataaatggtgggtagctcgatagcggaaacctgatagca 39960079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 288 - 346
Target Start/End: Original strand, 11232330 - 11232388
Alignment:
Q  288 actattgggcttagttcgtggacataaatggtgggtggttcaatagcggaaacttgata 346  Q
    |||||||||||| ||||||||||||||||||||||||  || ||||||||||| |||||    
T  11232330 actattgggcttggttcgtggacataaatggtgggtgactcgatagcggaaacctgata 11232388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 288 - 349
Target Start/End: Original strand, 3157145 - 3157206
Alignment:
Q  288 actattgggcttagttcgtggacataaatggtgggtggttcaatagcggaaacttgatagca 349  Q
    |||||||||||| ||||||||||||||||||||||||   | ||||||||||| ||||||||    
T  3157145 actattgggcttggttcgtggacataaatggtgggtgtcccgatagcggaaacctgatagca 3157206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 288 - 349
Target Start/End: Original strand, 18004230 - 18004291
Alignment:
Q  288 actattgggcttagttcgtggacataaatggtgggtggttcaatagcggaaacttgatagca 349  Q
    |||||| ||||| |||||||||||||||||||||||||  | ||||||||||| ||||||||    
T  18004230 actattaggcttggttcgtggacataaatggtgggtggcccgatagcggaaacctgatagca 18004291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 288 - 349
Target Start/End: Original strand, 39052673 - 39052734
Alignment:
Q  288 actattgggcttagttcgtggacataaatggtgggtggttcaatagcggaaacttgatagca 349  Q
    |||||||||||| |||||||||||||||||||||||||    ||||||||||| ||||||||    
T  39052673 actattgggcttggttcgtggacataaatggtgggtggccggatagcggaaacctgatagca 39052734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 288 - 349
Target Start/End: Original strand, 39052830 - 39052891
Alignment:
Q  288 actattgggcttagttcgtggacataaatggtgggtggttcaatagcggaaacttgatagca 349  Q
    |||||||||||| |||||||||||||||||||||||||    ||||||||||| ||||||||    
T  39052830 actattgggcttggttcgtggacataaatggtgggtggccggatagcggaaacctgatagca 39052891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 292 - 349
Target Start/End: Complemental strand, 41790837 - 41790780
Alignment:
Q  292 ttgggcttagttcgtggacataaatggtgggtggttcaatagcggaaacttgatagca 349  Q
    |||||||| |||| |||||||||||||||||||| || ||||||||||| ||||||||    
T  41790837 ttgggcttggttcatggacataaatggtgggtggctcgatagcggaaacctgatagca 41790780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 288 - 339
Target Start/End: Original strand, 37867969 - 37868020
Alignment:
Q  288 actattgggcttagttcgtggacataaatggtgggtggttcaatagcggaaa 339  Q
    |||||||| ||| |||||||||||||||||||||||||  ||||||||||||    
T  37867969 actattggccttggttcgtggacataaatggtgggtggcccaatagcggaaa 37868020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 288 - 349
Target Start/End: Original strand, 3157460 - 3157521
Alignment:
Q  288 actattgggcttagttcgtggacataaatggtgggtggttcaatagcggaaacttgatagca 349  Q
    |||||||||||| ||||||||||||||||||||||||   | |||||| |||| ||||||||    
T  3157460 actattgggcttggttcgtggacataaatggtgggtgtcccgatagcgaaaacctgatagca 3157521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 288 - 349
Target Start/End: Original strand, 5675870 - 5675931
Alignment:
Q  288 actattgggcttagttcgtggacataaatggtgggtggttcaatagcggaaacttgatagca 349  Q
    |||||||| ||| ||||||||||||||||||||||||   | |||||| |||||||||||||    
T  5675870 actattggacttggttcgtggacataaatggtgggtgacccgatagcgaaaacttgatagca 5675931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 296 - 349
Target Start/End: Complemental strand, 7669594 - 7669541
Alignment:
Q  296 gcttagttcgtggacataaatggtgggtggttcaatagcggaaacttgatagca 349  Q
    |||| |||||||||||||||||||||||||| | |||| |||||| ||||||||    
T  7669594 gcttggttcgtggacataaatggtgggtggtccgatagtggaaacctgatagca 7669541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 288 - 325
Target Start/End: Original strand, 20094696 - 20094733
Alignment:
Q  288 actattgggcttagttcgtggacataaatggtgggtgg 325  Q
    |||||||||||| |||||||||||||||||||||||||    
T  20094696 actattgggcttggttcgtggacataaatggtgggtgg 20094733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 288 - 349
Target Start/End: Original strand, 35682917 - 35682978
Alignment:
Q  288 actattgggcttagttcgtggacataaatggtgggtggttcaatagcggaaacttgatagca 349  Q
    ||||||| |||| |||||||||||||||||||||||||  | ||||||||||| | ||||||    
T  35682917 actattgagcttggttcgtggacataaatggtgggtggcccgatagcggaaacctaatagca 35682978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 290 - 340
Target Start/End: Original strand, 5589878 - 5589928
Alignment:
Q  290 tattgggcttagttcgtggacataaatggtgggtggttcaatagcggaaac 340  Q
    |||||||||| |||||||||||||||| ||||||| | | |||||||||||    
T  5589878 tattgggcttggttcgtggacataaattgtgggtgatccgatagcggaaac 5589928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 288 - 349
Target Start/End: Original strand, 8466624 - 8466685
Alignment:
Q  288 actattgggcttagttcgtggacataaatggtgggtggttcaatagcggaaacttgatagca 349  Q
    |||||||||||| || |||| | ||||||||||||||| |  ||||||||||| ||||||||    
T  8466624 actattgggcttggtgcgtgcatataaatggtgggtggcttgatagcggaaacctgatagca 8466685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 288 - 321
Target Start/End: Original strand, 15797144 - 15797177
Alignment:
Q  288 actattgggcttagttcgtggacataaatggtgg 321  Q
    |||||||||||| |||||||||||||||||||||    
T  15797144 actattgggcttggttcgtggacataaatggtgg 15797177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 301 - 349
Target Start/End: Original strand, 7289349 - 7289397
Alignment:
Q  301 gttcgtggacataaatggtgggtggttcaatagcggaaacttgatagca 349  Q
    |||| ||||||||||||||||||||||  |||||| |||| ||||||||    
T  7289349 gttcctggacataaatggtgggtggtttgatagcgaaaacctgatagca 7289397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 288 - 324
Target Start/End: Original strand, 37868209 - 37868245
Alignment:
Q  288 actattgggcttagttcgtggacataaatggtgggtg 324  Q
    |||||||||||| | ||||||||||||||||||||||    
T  37868209 actattgggcttggctcgtggacataaatggtgggtg 37868245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 288 - 349
Target Start/End: Original strand, 6400756 - 6400817
Alignment:
Q  288 actattgggcttagttcgtggacataaatggtgggtggttcaatagcggaaacttgatagca 349  Q
    |||||||||||| |||||||||||||||||||||||||| | ||||| ||||| ||||||||    
T  6400756 actattgggcttggttcgtggacataaatggtgggtggtccgatagcagaaacctgatagca 6400817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 288 - 346
Target Start/End: Complemental strand, 13353384 - 13353326
Alignment:
Q  288 actattgggcttagttcgtggacataaatggtgggtggttcaatagcggaaacttgata 346  Q
    |||||||||||| |||||||||||||||||||||||||  | ||||||||||| |||||    
T  13353384 actattgggcttggttcgtggacataaatggtgggtggcccgatagcggaaacctgata 13353326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 288 - 346
Target Start/End: Complemental strand, 33796509 - 33796451
Alignment:
Q  288 actattgggcttagttcgtggacataaatggtgggtggttcaatagcggaaacttgata 346  Q
    |||||||||||| |||||||||||||||||||||||||  | ||||||||||| |||||    
T  33796509 actattgggcttggttcgtggacataaatggtgggtggcccgatagcggaaacctgata 33796451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 288 - 349
Target Start/End: Original strand, 4868713 - 4868774
Alignment:
Q  288 actattgggcttagttcgtggacataaatggtgggtggttcaatagcggaaacttgatagca 349  Q
    |||||||||||| |||||||||||||||||||||||||  | ||| ||||||| ||||||||    
T  4868713 actattgggcttggttcgtggacataaatggtgggtggcccgataacggaaacctgatagca 4868774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 291 - 349
Target Start/End: Original strand, 12330083 - 12330141
Alignment:
Q  291 attgggcttagttcgtggacataaatggtgggtggttcaatagcggaaacttgatagca 349  Q
    ||||||||| |||||||||||||||||||||||||  | || |||||||| ||||||||    
T  12330083 attgggcttggttcgtggacataaatggtgggtggcccgatggcggaaacctgatagca 12330141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 301 - 350
Target Start/End: Original strand, 6237621 - 6237670
Alignment:
Q  301 gttcgtggacataaatggtgggtggttcaatagcggaaacttgatagcaa 350  Q
    |||||||||||||||||||||||||| | ||||||||||| || ||||||    
T  6237621 gttcgtggacataaatggtgggtggtccgatagcggaaacctggtagcaa 6237670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 288 - 349
Target Start/End: Original strand, 17147796 - 17147857
Alignment:
Q  288 actattgggcttagttcgtggacataaatggtgggtggttcaatagcggaaacttgatagca 349  Q
    |||||||||||| ||||||||||||||||||||||||     ||||||||||| ||||||||    
T  17147796 actattgggcttggttcgtggacataaatggtgggtgacctgatagcggaaacctgatagca 17147857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 291 - 349
Target Start/End: Complemental strand, 12648580 - 12648522
Alignment:
Q  291 attgggcttagttcgtggacataaatggtgggtggttcaatagcggaaacttgatagca 349  Q
    |||||||||| |||||| ||||||||||| ||||  || |||| |||||||||||||||    
T  12648580 attgggcttaattcgtgaacataaatggtaggtgactcgatagtggaaacttgatagca 12648522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 287 - 349
Target Start/End: Complemental strand, 31961127 - 31961065
Alignment:
Q  287 tactattgggcttagttcgtggacataaatggtgggtggttcaatagcggaaacttgatagca 349  Q
    ||||||||||||| || ||||||||||||||||||| ||  | ||||| ||||| ||||||||    
T  31961127 tactattgggcttggtccgtggacataaatggtggggggcacgatagcagaaacctgatagca 31961065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 292 - 349
Target Start/End: Complemental strand, 30256756 - 30256700
Alignment:
Q  292 ttgggcttagttcgtggacataaatggtgggtggttcaatagcggaaacttgatagca 349  Q
    ||||||||||||||||||||||||||| |||||| || ||| || |||| ||||||||    
T  30256756 ttgggcttagttcgtggacataaatgg-gggtggctcgatatcgaaaacctgatagca 30256700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 288 - 349
Target Start/End: Complemental strand, 33494722 - 33494661
Alignment:
Q  288 actattgggcttagttcgtggacataaatggtgggtggttcaatagcggaaacttgatagca 349  Q
    |||||||||||| ||||||| ||||||| |||||||||  | |||| |||||| ||||||||    
T  33494722 actattgggcttggttcgtgaacataaacggtgggtggcccgatagtggaaacctgatagca 33494661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 290 - 350
Target Start/End: Original strand, 6542846 - 6542906
Alignment:
Q  290 tattgggcttagttcgtggacataaatggtgggtggttcaatagcggaaacttgatagcaa 350  Q
    |||||| ||| ||||||||||||||||||||||||   | ||| ||||||| |||||||||    
T  6542846 tattggacttggttcgtggacataaatggtgggtgacccgataacggaaacctgatagcaa 6542906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 301 - 349
Target Start/End: Original strand, 30849316 - 30849364
Alignment:
Q  301 gttcgtggacataaatggtgggtggttcaatagcggaaacttgatagca 349  Q
    |||||||||||||||||||| |||| ||| |||||||||| | ||||||    
T  30849316 gttcgtggacataaatggtgagtggctcattagcggaaacctaatagca 30849364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 288 - 349
Target Start/End: Original strand, 5398611 - 5398672
Alignment:
Q  288 actattgggcttagttcgtggacataaatggtgggtggttcaatagcggaaacttgatagca 349  Q
    |||||| ||||| |||||||||||||||||||||||||| | ||||||||||| ||||||||    
T  5398611 actatttggcttggttcgtggacataaatggtgggtggtccgatagcggaaacctgatagca 5398672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 288 - 349
Target Start/End: Original strand, 28245662 - 28245723
Alignment:
Q  288 actattgggcttagttcgtggacataaatggtgggtggttcaatagcggaaacttgatagca 349  Q
    |||||||||||| |||||||||||||||||||||||||  | ||||||||||| ||||||||    
T  28245662 actattgggcttggttcgtggacataaatggtgggtggcccgatagcggaaacctgatagca 28245723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 290 - 349
Target Start/End: Original strand, 5398348 - 5398407
Alignment:
Q  290 tattgggcttagttcgtggacataaatggtgggtggttcaatagcggaaacttgatagca 349  Q
    |||||||||| |||||||||||||||||||||||||| | |||| |||||| ||||||||    
T  5398348 tattgggcttggttcgtggacataaatggtgggtggtccgataggggaaacctgatagca 5398407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 288 - 349
Target Start/End: Original strand, 22231209 - 22231270
Alignment:
Q  288 actattgggcttagttcgtggacataaatggtgggtggttcaatagcggaaacttgatagca 349  Q
    |||||||||||| ||||||||||||||||||| |||||  | ||||||||||| ||||||||    
T  22231209 actattgggcttggttcgtggacataaatggtaggtggcccgatagcggaaacctgatagca 22231270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 288 - 349
Target Start/End: Original strand, 35796878 - 35796939
Alignment:
Q  288 actattgggcttagttcgtggacataaatggtgggtggttcaatagcggaaacttgatagca 349  Q
    |||||||||||| ||||||||| |||||||||||||||  | ||||||||||| ||||||||    
T  35796878 actattgggcttggttcgtggagataaatggtgggtggcccgatagcggaaacctgatagca 35796939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 288 - 349
Target Start/End: Original strand, 35819029 - 35819090
Alignment:
Q  288 actattgggcttagttcgtggacataaatggtgggtggttcaatagcggaaacttgatagca 349  Q
    |||||||||||| ||||||||||||||||||||||||   | ||||||||||| ||||||||    
T  35819029 actattgggcttggttcgtggacataaatggtgggtgacccgatagcggaaacctgatagca 35819090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 288 - 349
Target Start/End: Original strand, 50543466 - 50543527
Alignment:
Q  288 actattgggcttagttcgtggacataaatggtgggtggttcaatagcggaaacttgatagca 349  Q
    |||||||||||| |||||||||||||||||||||||||  | ||| ||||||| ||||||||    
T  50543466 actattgggcttggttcgtggacataaatggtgggtggcccgataacggaaacctgatagca 50543527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 287 - 349
Target Start/End: Original strand, 25324169 - 25324231
Alignment:
Q  287 tactattgggcttagttcgtggacataaatggtgggtggttcaatagcggaaacttgatagca 349  Q
    ||||||||||||| || ||| || |||||||||||||||  | ||||||||||||||||||||    
T  25324169 tactattgggcttggtgcgtagatataaatggtgggtggcccgatagcggaaacttgatagca 25324231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 288 - 350
Target Start/End: Original strand, 27634217 - 27634279
Alignment:
Q  288 actattgggcttagttcgtggacataaatggtgggtggttcaatagcggaaacttgatagcaa 350  Q
    |||||||||||| |||||||||||||||  ||||||||| | ||||| ||||| |||||||||    
T  27634217 actattgggcttggttcgtggacataaacagtgggtggtccgatagcagaaacctgatagcaa 27634279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 291 - 349
Target Start/End: Original strand, 35645304 - 35645362
Alignment:
Q  291 attgggcttagttcgtggacataaatggtgggtggttcaatagcggaaacttgatagca 349  Q
    |||||| || |||||||||||||||||| ||||||  | ||||||||||||||||||||    
T  35645304 attgggtttggttcgtggacataaatggcgggtggcccgatagcggaaacttgatagca 35645362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 291 - 349
Target Start/End: Original strand, 35645593 - 35645651
Alignment:
Q  291 attgggcttagttcgtggacataaatggtgggtggttcaatagcggaaacttgatagca 349  Q
    |||||| || |||||||||||||||||| ||||||  | ||||||||||||||||||||    
T  35645593 attgggtttggttcgtggacataaatggcgggtggcccgatagcggaaacttgatagca 35645651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 288 - 325
Target Start/End: Complemental strand, 35788843 - 35788806
Alignment:
Q  288 actattgggcttagttcgtggacataaatggtgggtgg 325  Q
    |||||||||||| |||||||||||||||||||||||||    
T  35788843 actattgggcttggttcgtggacataaatggtgggtgg 35788806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 288 - 345
Target Start/End: Original strand, 40717342 - 40717399
Alignment:
Q  288 actattgggcttagttcgtggacataaatggtgggtggttcaatagcggaaacttgat 345  Q
    |||||| ||||| ||| |||||||||||||||||||||| | ||||||||||| ||||    
T  40717342 actattaggcttggtttgtggacataaatggtgggtggtccgatagcggaaacctgat 40717399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 288 - 325
Target Start/End: Complemental strand, 52559752 - 52559715
Alignment:
Q  288 actattgggcttagttcgtggacataaatggtgggtgg 325  Q
    |||||||||||| |||||||||||||||||||||||||    
T  52559752 actattgggcttggttcgtggacataaatggtgggtgg 52559715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 292 - 349
Target Start/End: Complemental strand, 4645821 - 4645764
Alignment:
Q  292 ttgggcttagttcgtggacataaatggtgggtggttcaatagcggaaacttgatagca 349  Q
    ||||||||  ||||||||||||| ||||||||||  | ||||||||||| ||||||||    
T  4645821 ttgggcttgattcgtggacataattggtgggtggcccgatagcggaaacctgatagca 4645764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 289 - 325
Target Start/End: Complemental strand, 24974289 - 24974253
Alignment:
Q  289 ctattgggcttagttcgtggacataaatggtgggtgg 325  Q
    ||||||||||| |||||| ||||||||||||||||||    
T  24974289 ctattgggcttggttcgtagacataaatggtgggtgg 24974253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 288 - 349
Target Start/End: Complemental strand, 2029952 - 2029891
Alignment:
Q  288 actattgggcttagttcgtggacataaatggtgggtggttcaatagcggaaacttgatagca 349  Q
    |||||||||||| |||||||||||||||||||||||||| | ||||||||||| | ||||||    
T  2029952 actattgggcttggttcgtggacataaatggtgggtggtccgatagcggaaacctaatagca 2029891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 288 - 349
Target Start/End: Complemental strand, 16419450 - 16419389
Alignment:
Q  288 actattgggcttagttcgtggacataaatggtgggtggttcaatagcggaaacttgatagca 349  Q
    ||||||| |||| ||||||||||||||||||||||||| || ||||||||||| ||||||||    
T  16419450 actattgagcttggttcgtggacataaatggtgggtggctcgatagcggaaacctgatagca 16419389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 288 - 346
Target Start/End: Original strand, 14466311 - 14466369
Alignment:
Q  288 actattgggcttagttcgtggacataaatggtgggtggttcaatagcggaaacttgata 346  Q
    |||||||||||| |||||||||||||||||||||||||  | ||||||||||| |||||    
T  14466311 actattgggcttggttcgtggacataaatggtgggtggcccgatagcggaaacctgata 14466369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 288 - 349
Target Start/End: Original strand, 5711575 - 5711636
Alignment:
Q  288 actattgggcttagttcgtggacataaatggtgggtggttcaatagcggaaacttgatagca 349  Q
    |||||||||||| |||||||||||||||||||||||||  | ||| ||||||| ||||||||    
T  5711575 actattgggcttggttcgtggacataaatggtgggtggcccgataacggaaacctgatagca 5711636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 288 - 349
Target Start/End: Original strand, 17525235 - 17525296
Alignment:
Q  288 actattgggcttagttcgtggacataaatggtgggtggttcaatagcggaaacttgatagca 349  Q
    |||||||||||| |||||||||||||||||||||||||  | |||||||| || ||||||||    
T  17525235 actattgggcttggttcgtggacataaatggtgggtggcccgatagcggatacctgatagca 17525296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 288 - 350
Target Start/End: Original strand, 33606190 - 33606252
Alignment:
Q  288 actattgggcttagttcgtggacataaatggtgggtggttcaatagcggaaacttgatagcaa 350  Q
    |||||| ||||| |||||||||||||||||||||||||    ||||||||||| |||||||||    
T  33606190 actattaggcttggttcgtggacataaatggtgggtggcctgatagcggaaacctgatagcaa 33606252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 304 - 349
Target Start/End: Complemental strand, 10523185 - 10523140
Alignment:
Q  304 cgtggacataaatggtgggtggttcaatagcggaaacttgatagca 349  Q
    |||||||||||||||||||||| || ||| ||||||||||||||||    
T  10523185 cgtggacataaatggtgggtggctcgataacggaaacttgatagca 10523140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 288 - 349
Target Start/End: Complemental strand, 16533495 - 16533434
Alignment:
Q  288 actattgggcttagttcgtggacataaatggtgggtggttcaatagcggaaacttgatagca 349  Q
    |||||||| ||| |||||||||||||||||||||||||  | |||||| |||| ||||||||    
T  16533495 actattggccttggttcgtggacataaatggtgggtggcccgatagcgaaaacctgatagca 16533434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 288 - 349
Target Start/End: Original strand, 40149137 - 40149198
Alignment:
Q  288 actattgggcttagttcgtggacataaatggtgggtggttcaatagcggaaacttgatagca 349  Q
    |||||||||||| |||||||||||||||| ||||||||| | ||||| ||||  ||||||||    
T  40149137 actattgggcttggttcgtggacataaatagtgggtggtccgatagctgaaatctgatagca 40149198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 301 - 347
Target Start/End: Complemental strand, 34893595 - 34893549
Alignment:
Q  301 gttcgtggacataaatggtgggtggttcaatagcggaaacttgatag 347  Q
    |||||||||||||||||||||||||| | |||||| |||| ||||||    
T  34893595 gttcgtggacataaatggtgggtggtccgatagcgaaaacctgatag 34893549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 288 - 349
Target Start/End: Original strand, 18607145 - 18607206
Alignment:
Q  288 actattgggcttagttcgtggacataaatggtgggtggttcaatagcggaaacttgatagca 349  Q
    |||||||||||| |||||| |||||||||||||||| |  | ||| ||||||| ||||||||    
T  18607145 actattgggcttggttcgtagacataaatggtgggttgcccgataacggaaacctgatagca 18607206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 288 - 349
Target Start/End: Original strand, 31001884 - 31001945
Alignment:
Q  288 actattgggcttagttcgtggacataaatggtgggtggttcaatagcggaaacttgatagca 349  Q
    |||||||||||| ||||||||| ||||||||| |||||    ||||||||||| ||||||||    
T  31001884 actattgggcttggttcgtggatataaatggtaggtggcatgatagcggaaacctgatagca 31001945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 292 - 349
Target Start/End: Original strand, 40379349 - 40379406
Alignment:
Q  292 ttgggcttagttcgtggacataaatggtgggtggttcaatagcggaaacttgatagca 349  Q
    |||||||| ||||||||| |||||||||||||||  | |||| |||||| ||||||||    
T  40379349 ttgggcttggttcgtggatataaatggtgggtggcccgatagaggaaacctgatagca 40379406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0519 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: scaffold0519
Description:

Target: scaffold0519; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 288 - 346
Target Start/End: Complemental strand, 2099 - 2041
Alignment:
Q  288 actattgggcttagttcgtggacataaatggtgggtggttcaatagcggaaacttgata 346  Q
    |||||||||||| ||||||||||||||||||||||||  || ||||||||||| |||||    
T  2099 actattgggcttggttcgtggacataaatggtgggtgactcgatagcggaaacctgata 2041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 287 - 349
Target Start/End: Original strand, 19954352 - 19954414
Alignment:
Q  287 tactattgggcttagttcgtggacataaatggtgggtggttcaatagcggaaacttgatagca 349  Q
    ||||||||||||| ||||||||||||||||||||||||||   |||||| |||| ||||||||    
T  19954352 tactattgggcttggttcgtggacataaatggtgggtggtcagatagcgaaaacctgatagca 19954414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 288 - 349
Target Start/End: Original strand, 13574821 - 13574882
Alignment:
Q  288 actattgggcttagttcgtggacataaatggtgggtggttcaatagcggaaacttgatagca 349  Q
    |||||||||||| ||||||||||||||||||||||||   | ||||||||||| ||||||||    
T  13574821 actattgggcttggttcgtggacataaatggtgggtgacacgatagcggaaacctgatagca 13574882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 288 - 349
Target Start/End: Complemental strand, 16239775 - 16239714
Alignment:
Q  288 actattgggcttagttcgtggacataaatggtgggtggttcaatagcggaaacttgatagca 349  Q
    ||||||| |||| ||||||||||||||||||||||||| || ||| ||||||| ||||||||    
T  16239775 actattgagcttggttcgtggacataaatggtgggtggctcgataacggaaacctgatagca 16239714  T

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Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 288 - 349
Target Start/End: Original strand, 20327750 - 20327811
Alignment:
Q  288 actattgggcttagttcgtggacataaatggtgggtggttcaatagcggaaacttgatagca 349  Q
    |||||||||||| |||| ||||||||||||||||||||  | ||||||||||| ||||||||    
T  20327750 actattgggcttggttcctggacataaatggtgggtggcccgatagcggaaacctgatagca 20327811  T

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Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 287 - 325
Target Start/End: Original strand, 35038329 - 35038367
Alignment:
Q  287 tactattgggcttagttcgtggacataaatggtgggtgg 325  Q
    ||||||||||||| |||||||||||||||||||||||||    
T  35038329 tactattgggcttggttcgtggacataaatggtgggtgg 35038367  T

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Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 288 - 349
Target Start/End: Complemental strand, 4155507 - 4155446
Alignment:
Q  288 actattgggcttagttcgtggacataaatggtgggtggttcaatagcggaaacttgatagca 349  Q
    |||||||||||| |||||| |||||||| |||||||||  | ||||||||||| ||||||||    
T  4155507 actattgggcttggttcgtcgacataaacggtgggtggcccgatagcggaaacctgatagca 4155446  T

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Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 292 - 349
Target Start/End: Original strand, 20303204 - 20303261
Alignment:
Q  292 ttgggcttagttcgtggacataaatggtgggtggttcaatagcggaaacttgatagca 349  Q
    |||| ||| |||||||||||||||||||||||||  | ||||||||||| ||||||||    
T  20303204 ttggacttggttcgtggacataaatggtgggtggaccgatagcggaaacctgatagca 20303261  T

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Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 288 - 349
Target Start/End: Original strand, 20303286 - 20303347
Alignment:
Q  288 actattgggcttagttcgtggacataaatggtgggtggttcaatagcggaaacttgatagca 349  Q
    |||||||| ||| |||||||||||||||||||||||||  | |||| |||||| ||||||||    
T  20303286 actattggacttggttcgtggacataaatggtgggtggaccgatagtggaaacctgatagca 20303347  T

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Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 288 - 349
Target Start/End: Complemental strand, 34992789 - 34992728
Alignment:
Q  288 actattgggcttagttcgtggacataaatggtgggtggttcaatagcggaaacttgatagca 349  Q
    |||||||||||| ||||||||||||||||||||||||   | | ||||||||| ||||||||    
T  34992789 actattgggcttggttcgtggacataaatggtgggtgacccgacagcggaaacctgatagca 34992728  T

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Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 290 - 325
Target Start/End: Original strand, 39683406 - 39683441
Alignment:
Q  290 tattgggcttagttcgtggacataaatggtgggtgg 325  Q
    |||||||||| |||||||||||||||||||||||||    
T  39683406 tattgggcttggttcgtggacataaatggtgggtgg 39683441  T

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Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 290 - 340
Target Start/End: Complemental strand, 22729674 - 22729624
Alignment:
Q  290 tattgggcttagttcgtggacataaatggtgggtggttcaatagcggaaac 340  Q
    |||||||||| |||||||||||||||| ||||||| | | |||||||||||    
T  22729674 tattgggcttggttcgtggacataaattgtgggtgatccgatagcggaaac 22729624  T

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Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 288 - 349
Target Start/End: Complemental strand, 46139445 - 46139384
Alignment:
Q  288 actattgggcttagttcgtggacataaatggtgggtggttcaatagcggaaacttgatagca 349  Q
    |||||||||||| ||| ||| |||||||||||||||||  | ||||| ||||| ||||||||    
T  46139445 actattgggcttggtttgtgaacataaatggtgggtggcccgatagcagaaacctgatagca 46139384  T

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Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 305 - 349
Target Start/End: Complemental strand, 21888571 - 21888527
Alignment:
Q  305 gtggacataaatggtgggtggttcaatagcggaaacttgatagca 349  Q
    ||||| |||||||||||||||| | ||||||||||| ||||||||    
T  21888571 gtggatataaatggtgggtggtccgatagcggaaacctgatagca 21888527  T

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Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 305 - 349
Target Start/End: Complemental strand, 45828185 - 45828141
Alignment:
Q  305 gtggacataaatggtgggtggttcaatagcggaaacttgatagca 349  Q
    ||||||||||||||||||||| || ||||||||||| || |||||    
T  45828185 gtggacataaatggtgggtggctcgatagcggaaacctggtagca 45828141  T

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Target: scaffold0045 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 298 - 349
Target Start/End: Original strand, 41117 - 41168
Alignment:
Q  298 ttagttcgtggacataaatggtgggtggttcaatagcggaaacttgatagca 349  Q
    ||||||||||| ||||||| ||||||||||| |||||| |||||||||||||    
T  41117 ttagttcgtgggcataaatagtgggtggttcgatagcgcaaacttgatagca 41168  T

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Target: scaffold0041 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 288 - 326
Target Start/End: Complemental strand, 67433 - 67395
Alignment:
Q  288 actattgggcttagttcgtggacataaatggtgggtggt 326  Q
    ||||||| |||| ||||||||||||||||||||||||||    
T  67433 actattgagcttggttcgtggacataaatggtgggtggt 67395  T

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Target: scaffold0129 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0129
Description:

Target: scaffold0129; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 290 - 346
Target Start/End: Complemental strand, 14484 - 14428
Alignment:
Q  290 tattgggcttagttcgtggacataaatggtgggtggttcaatagcggaaacttgata 346  Q
    ||||||||||  |||||||||||||||||| |||||  | ||||||||||| |||||    
T  14484 tattgggcttgattcgtggacataaatggtaggtggcccgatagcggaaacctgata 14428  T

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