View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17793_high_5 (Length: 714)
Name: NF17793_high_5
Description: NF17793
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17793_high_5 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 272; Significance: 1e-151; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 272; E-Value: 1e-151
Query Start/End: Original strand, 404 - 704
Target Start/End: Complemental strand, 5024759 - 5024457
Alignment:
| Q |
404 |
atgatattattagtagttcaaaagtttgttagtatatatagaagttctattttccaaagcatatctagtttgaagatgtgtgttcaaagaaccctaattc |
503 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5024759 |
atgatattattagtagttcaaaagtttgttcgtatctatagaagttctattttccaaagcatatctagtttgaagatgtgtgttcaaagaaccctaattc |
5024660 |
T |
|
| Q |
504 |
tcgcattgatttcaatatatatgtcgtattttcactttctctccttcctaagccctctgctctagagcaatcataaaagcttattgtagaggactttaga |
603 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
5024659 |
tcgcattgatttcaatatatatgtcgtattttcactttctctccttcctaagccctctgatctagagcaatcataaaatcttattgtagaggactttaga |
5024560 |
T |
|
| Q |
604 |
atgagtgaagaagaaataagacataaaac--ccatatgatagtgacaaggttgatggggtcgaatatttattatgatatatttaagatggttgtttttct |
701 |
Q |
| |
|
|||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5024559 |
atgagtgaagaagaaataagacataacaccaccatatgatagtgacaaggttgatggggtcgaatatttattatgatatatttaagatggttgtttttct |
5024460 |
T |
|
| Q |
702 |
gtg |
704 |
Q |
| |
|
||| |
|
|
| T |
5024459 |
gtg |
5024457 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 158; E-Value: 1e-83
Query Start/End: Original strand, 111 - 321
Target Start/End: Complemental strand, 5025069 - 5024843
Alignment:
| Q |
111 |
catatatataagtaacacttcattcatcctttgaaacactgccttgt----------------ctcaagagagcgtcggtgaagtataaaccatactccc |
194 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5025069 |
catatatataagtaacacttaattcatcctttgaaacactgccttatatttttcaaataacatctcaagagagcgtcggtgaagtataaaccatactccc |
5024970 |
T |
|
| Q |
195 |
ttgtcttctcttgcaatctgattaagtagtaaggagaggaaatatttcactgctaatgtttgcttttgagttctttttcatgttcaaatgtcttgtttta |
294 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
5024969 |
ttgtcttctcttgcaatctgatgaagtagtaaggagaggaaatatttcactgctaatgtttgcttttgagttctttttcatattcaaatgtcttgtttta |
5024870 |
T |
|
| Q |
295 |
ttgttttgtcctgttaaatctcaatta |
321 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
5024869 |
ttgttttgtcctgttaaatctcaatta |
5024843 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 61; Significance: 8e-26; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 36 - 104
Target Start/End: Complemental strand, 29494809 - 29494742
Alignment:
| Q |
36 |
attaattaaatgtgccacacaagaggggtgtatgagtggtatgccacctatggtggtatgggtatcagt |
104 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29494809 |
attaattaaatgtgccacacaagaggg-tgtatgagtggtatgccacctatggtggtatgggtatcagt |
29494742 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 52; Significance: 2e-20; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 36 - 95
Target Start/End: Complemental strand, 19843152 - 19843093
Alignment:
| Q |
36 |
attaattaaatgtgccacacaagaggggtgtatgagtggtatgccacctatggtggtatg |
95 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||| |
|
|
| T |
19843152 |
attaattaaatgtgccacacaagaggggtgtatgagtggtatgccagctatggaggtatg |
19843093 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 49; Significance: 1e-18; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 36 - 104
Target Start/End: Original strand, 6626644 - 6626712
Alignment:
| Q |
36 |
attaattaaatgtgccacacaagaggggtgtatgagtggtatgccacctatggtggtatgggtatcagt |
104 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||| |||||| | |||| |||||||| |
|
|
| T |
6626644 |
attaattaaatgtgctacacaagaggggtgtatgagtggtatgccagctatggagatatgtgtatcagt |
6626712 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 36 - 104
Target Start/End: Complemental strand, 6607572 - 6607509
Alignment:
| Q |
36 |
attaattaaatgtgccacacaagaggggtgtatgagtggtatgccacctatggtggtatgggtatcagt |
104 |
Q |
| |
|
||||||||||||||| ||||||||||||||||| |||||||| |||||| |||||| |||||||| |
|
|
| T |
6607572 |
attaattaaatgtgctacacaagaggggtgtat-----gtatgccagctatggaggtatgtgtatcagt |
6607509 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University