View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17793_high_51 (Length: 345)
Name: NF17793_high_51
Description: NF17793
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17793_high_51 |
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Alignment Details
Target: chr4 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 8 - 328
Target Start/End: Original strand, 9669529 - 9669848
Alignment:
| Q |
8 |
agattattctaccaaagagtgacgattcaattgtagataaaacttattaatctattccccaacttatcaaactcnnnnnnngcaagatcaaacctcaaac |
107 |
Q |
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| T |
9669529 |
agattattctaccaaagagtgacaatttaattgtagataaaacttattaatct---ccccaacttatcaaactcaaaaaaagcaagatcaaacctcaaac |
9669625 |
T |
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| Q |
108 |
ctttgttgctaagtataagagtgataaaagcatggataaatatttcacgggtgccaatcaaatagaaaggacgaagtaaaaaaca-nnnnnnnnngggta |
206 |
Q |
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| T |
9669626 |
ctttgttgctaggtttaagagtgataaaagcatggataaatatttcacgggtgccaatcaaatagaaaggacgaagtaaaaaacattttttttttgggta |
9669725 |
T |
|
| Q |
207 |
gtgaaagtaaaaaacatttaacccaaattcttcattgcctagttgatttaatatattttttcttaaag--nnnnnnntatataaagtacataattttgta |
304 |
Q |
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| T |
9669726 |
gtgaaagtaaaaaacatttaacccaaattcttcattgcctagttgatttaatata-tttttcttaaagaaaaaaaaatatataaagtacataattttgta |
9669824 |
T |
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| Q |
305 |
ccgagaataaaatattacaagaat |
328 |
Q |
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| T |
9669825 |
ccgagaataaaatattacaggaat |
9669848 |
T |
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