View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17793_high_52 (Length: 342)
Name: NF17793_high_52
Description: NF17793
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17793_high_52 |
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Alignment Details
Target: chr1 (Bit Score: 283; Significance: 1e-158; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 18 - 331
Target Start/End: Complemental strand, 7560417 - 7560101
Alignment:
| Q |
18 |
acctagaaatatttagtttgaaacctggcagcaatgagattttcaagaggtcagtgtgattcacaaatttgctttctggtaacttgggaagtcgaaacaa |
117 |
Q |
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| T |
7560417 |
acctagaaatatttagtttgaaacctggcagcaatgagactttcaagaggtcagtgtgattcacaaatttgcttgctggtaacttgggaagtcgaaacaa |
7560318 |
T |
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| Q |
118 |
agttaattatatatacataaaaaacaagatagattggttagcaagataagtgttaatcgtagcagagataaaaagtaaacactatcaattcagtagtttt |
217 |
Q |
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| T |
7560317 |
agttaattatatatacataaaaaacaagatagattggttagcaagataagtgttaatcttagcagagataaaaagtaaacactatcaattcagtagtttt |
7560218 |
T |
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| Q |
218 |
aacaatatactaaacactgcatccgacggagtaaacaaattcaaatatagttcaagacatctgttttgaagaatgtaaggttttc---agctctctcaaa |
314 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
7560217 |
aacaatatagtaaacactgcatccgacggagtaaacaaattcaaatatatttcaagacatctgttttgaagaatgtaaggttttcagaagctctctcaaa |
7560118 |
T |
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| Q |
315 |
tttcagcaagtgttcat |
331 |
Q |
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||||||||||||||||| |
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| T |
7560117 |
tttcagcaagtgttcat |
7560101 |
T |
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