View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17793_high_54 (Length: 339)
Name: NF17793_high_54
Description: NF17793
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17793_high_54 |
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Alignment Details
Target: chr5 (Bit Score: 205; Significance: 1e-112; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 17 - 323
Target Start/End: Complemental strand, 41349820 - 41349512
Alignment:
| Q |
17 |
atcatctggttacgcactgttaacaacaacttgttatattggtatgggagacacaattacagaggacatattcaagtgggtatcaaatgagccaaaaatt |
116 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||| |||||||| |
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| T |
41349820 |
atcatctggttacgcactgttaacaacaacttgttatattggtatgggagacacagttacagaggacatattcaaatgggtatcaaatgagtcaaaaatt |
41349721 |
T |
|
| Q |
117 |
attaatgctgctattgtcctttgcaggataatgaatgatattgtatccaatgaggnnnnnnnnnnnnnnnnna---agcatttcaaagtttcttctttgc |
213 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||| |||| | | ||||||||| | |||||||||| |
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| T |
41349720 |
attaatgctgctattgtcctttgcaggataatggatgatattgtatccaacgaggtatatatatatatatatatataacatttcaaactatcttctttgc |
41349621 |
T |
|
| Q |
214 |
aatatattttgtttttattcaaatgatgtgaacatttacatgaagtattatttttgcatatagtttgaacaaaaaagagaacatgtttcctcattcttgg |
313 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41349620 |
aatata-tttgtttttattcaaatgatgtgaacatttacatgaagtattatttttgcatatagtttgaacaaaaaagagaacatgtttcctcattcttgg |
41349522 |
T |
|
| Q |
314 |
aatgctatat |
323 |
Q |
| |
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|||||||||| |
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| T |
41349521 |
aatgctatat |
41349512 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 41 - 171
Target Start/End: Original strand, 31201276 - 31201406
Alignment:
| Q |
41 |
aacaacttgttatattggtatgggagacacaattacagaggacatattcaagtgggtatcaaatgagccaaaaattattaatgctgctattgtcctttgc |
140 |
Q |
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| T |
31201276 |
aacaacttgttatattggaatgggagacatagccacagaggacatcttcaagtgggtatcaaatgatccaaaagttattaatgctgcaattatcattgga |
31201375 |
T |
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| Q |
141 |
aggataatgaatgatattgtatccaatgagg |
171 |
Q |
| |
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||| ||||| |||| ||||| |||||||||| |
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| T |
31201376 |
aggttaatggatgacattgtgtccaatgagg |
31201406 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 54 - 171
Target Start/End: Original strand, 31161485 - 31161602
Alignment:
| Q |
54 |
attggtatgggagacacaattacagaggacatattcaagtgggtatcaaatgagccaaaaattattaatgctgctattgtcctttgcaggataatgaatg |
153 |
Q |
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||||| |||||||||| || |||||||| || ||||||||||||||||||| |||||||| |||||||||||||||| || ||||||||||| ||| |
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| T |
31161485 |
attggcatgggagacataaccacagaggagatcatcaagtgggtatcaaatgaaacaaaaattgttaatgctgctattgttattggcaggataatggatg |
31161584 |
T |
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| Q |
154 |
atattgtatccaatgagg |
171 |
Q |
| |
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| |||| ||||||||||| |
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| T |
31161585 |
acattgcatccaatgagg |
31161602 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 271 - 323
Target Start/End: Original strand, 31201497 - 31201549
Alignment:
| Q |
271 |
atatagtttgaacaaaaaagagaacatgtttcctcattcttggaatgctatat |
323 |
Q |
| |
|
||||||||||||||| |||||||||||||| |||||||||||||||||||||| |
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| T |
31201497 |
atatagtttgaacaagaaagagaacatgttacctcattcttggaatgctatat |
31201549 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 221 - 320
Target Start/End: Original strand, 31161720 - 31161820
Alignment:
| Q |
221 |
tttgtttttattcaaatgatgtgaacatttacatgaagtattattt-ttgcatatagtttgaacaaaaaagagaacatgtttcctcattcttggaatgct |
319 |
Q |
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|||||||| |||||| || || || |||||| |||| ||||||| ||| |||||||||||||| |||||||||||| | ||||||||||||||||||| |
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| T |
31161720 |
tttgttttaattcaatggaagtaaaaatttacttgaattattattcgttgtatatagtttgaacagaaaagagaacatatgtcctcattcttggaatgct |
31161819 |
T |
|
| Q |
320 |
a |
320 |
Q |
| |
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| |
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| T |
31161820 |
a |
31161820 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 71; Significance: 4e-32; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 17 - 171
Target Start/End: Original strand, 25793936 - 25794090
Alignment:
| Q |
17 |
atcatctggttacgcactgttaacaacaacttgttatattggtatgggagacacaattacagaggacatattcaagtgggtatcaaatgagccaaaaatt |
116 |
Q |
| |
|
|||||||||||| |||||| | || ||||||| ||| ||||||||||||| |||| ||||| ||||| ||||||||| |||||||||||||||||||| |
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| T |
25793936 |
atcatctggttatgcactggtgaccacaacttcttacattggtatgggagccacagccacagaagacatcttcaagtggatatcaaatgagccaaaaatt |
25794035 |
T |
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| Q |
117 |
attaatgctgctattgtcctttgcaggataatgaatgatattgtatccaatgagg |
171 |
Q |
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|||||||| || |||| ||||||||| ||||| |||| ||||| |||||||||| |
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| T |
25794036 |
cttaatgcttctgttgtactttgcaggctaatggatgacattgtgtccaatgagg |
25794090 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 221 - 323
Target Start/End: Original strand, 25794131 - 25794232
Alignment:
| Q |
221 |
tttgtttttattcaaatgatgtgaacatttacatgaagtattattt-ttgcatatagtttgaacaaaaaagagaacatgtttcctcattcttggaatgct |
319 |
Q |
| |
|
|||||||| ||||||||||||| ||||||||||||| |||| || ||||||| |||||||||||||||||||||||||||||||||| |||| || | |
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| T |
25794131 |
tttgttttaattcaaatgatgtagacatttacatgaattatttcttgttgcata--gtttgaacaaaaaagagaacatgtttcctcattcctggagtgtt |
25794228 |
T |
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| Q |
320 |
atat |
323 |
Q |
| |
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|||| |
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| T |
25794229 |
atat |
25794232 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 259 - 323
Target Start/End: Complemental strand, 4314755 - 4314690
Alignment:
| Q |
259 |
tattattt-ttgcatatagtttgaacaaaaaagagaacatgtttcctcattcttggaatgctatat |
323 |
Q |
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|||||||| |||||||||||||||| |||||||||| |||||||| |||||||||||||||||||| |
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| T |
4314755 |
tattatttgttgcatatagtttgaataaaaaagagatcatgtttcttcattcttggaatgctatat |
4314690 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 87 - 171
Target Start/End: Complemental strand, 4314915 - 4314831
Alignment:
| Q |
87 |
ttcaagtgggtatcaaatgagccaaaaattattaatgctgctattgtcctttgcaggataatgaatgatattgtatccaatgagg |
171 |
Q |
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||||||||||||||||||| |||||| || |||||||||||| ||||||||||| ||||| ||||||||| |||||| |||| |
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| T |
4314915 |
ttcaagtgggtatcaaatggaataaaaatgatcaatgctgctattatcctttgcaggctaatggatgatattgcatccaacgagg |
4314831 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 275 - 323
Target Start/End: Original strand, 17183098 - 17183146
Alignment:
| Q |
275 |
agtttgaacaaaaaagagaacatgtttcctcattcttggaatgctatat |
323 |
Q |
| |
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|||||||||| ||||||| |||||||||||||||||||||||||||||| |
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|
| T |
17183098 |
agtttgaacataaaagaggacatgtttcctcattcttggaatgctatat |
17183146 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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