View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17793_high_6 (Length: 694)
Name: NF17793_high_6
Description: NF17793
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17793_high_6 |
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Alignment Details
Target: chr8 (Bit Score: 447; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 447; E-Value: 0
Query Start/End: Original strand, 137 - 636
Target Start/End: Original strand, 30523819 - 30524310
Alignment:
| Q |
137 |
aaggtaagtggtgattaaatttccatcccatgatttgaggcaagtttgtgcaatggattcaatattaggaacaatgcttttgatggcttcaggcatgaag |
236 |
Q |
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| T |
30523819 |
aaggtaagtggtgattaaatttccatcccatgatttgaggcaagtttgtgcaatggattcaatattaggaacaatgcttttgatggcttcaggcatgaaa |
30523918 |
T |
|
| Q |
237 |
gaacgaagaacaagtcttcttaggttagcatgataatttccttgatgaaagaaaattgcttgtttccctaacatcctttctttgctagctggaaatgttg |
336 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30523919 |
gaacgaagaacaagtcttcttaggttagcatgataatttccttgatgaaagaaaattgcttgtttccctaacatcctttctttgctagctggaaatgttg |
30524018 |
T |
|
| Q |
337 |
gtttgaaaagttgagatttgtttaacacaaattttgctgcttctggacttgaaatcatcacacaaggacaacctaaaatgtgagacttgaacatagcacc |
436 |
Q |
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| T |
30524019 |
gtttgaaaagttgagatttgtttaacacaaattttgctgcttctggacttgaaatcatcacacaaggacaacctaaaatgtgagacttgaacatagcacc |
30524118 |
T |
|
| Q |
437 |
atacctataattcaaaaacaaaatcaacaataataattagtataaatatcacttaatgagctaatctagtatgtaagtacaactcagatgataaatagtt |
536 |
Q |
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| T |
30524119 |
atacctataattcaaaaacaaaatcaacaataataattagtatatatatcacttaatgagctaatctagtctgtaagtacaactcagatgataaatagtt |
30524218 |
T |
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| Q |
537 |
gcagggacatttgatatcatggggtgcagggttgaacccgcaattccctatttctcatcaaactaagtatgcgcgagtttcgctgctaggctctttgaag |
636 |
Q |
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| T |
30524219 |
gcagggacatttgata--------tgcagggttgaacccgtaattccctatttctcatcatactaattatgcgcgagtttcgctgctaggctctttgaag |
30524310 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 134; Significance: 2e-69; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 186 - 443
Target Start/End: Complemental strand, 10423121 - 10422864
Alignment:
| Q |
186 |
gcaatggattcaatattaggaacaatgcttttgatggcttcaggcatgaaggaacgaagaacaagtcttcttaggttagcatgataatttccttgatgaa |
285 |
Q |
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|||||||||||||| | |||||||||| || |||||||| | |||||||| | ||||||||||||||||||| ||||||||||| | ||||||||||| |
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| T |
10423121 |
gcaatggattcaatgtcaggaacaatgtttctgatggctaccggcatgaacgtgcgaagaacaagtcttcttaaattagcatgatactctccttgatgaa |
10423022 |
T |
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| Q |
286 |
agaaaattgcttgtttccctaacatcctttctttgctagctggaaatgttggtttgaaaagttgagatttgtttaacacaaattttgctgcttctggact |
385 |
Q |
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| T |
10423021 |
aaaagatagcttgttttcccaacatcctctctttgctagcagggaatgttggcttgaaaagttgagctttattcagcacaaattttgctgcttcaggact |
10422922 |
T |
|
| Q |
386 |
tgaaatcatcacacaaggacaacctaaaatgtgagacttgaacatagcaccataccta |
443 |
Q |
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| T |
10422921 |
tgaaatcatcacacatggacatcccaaaatgtgagacttgaacatagaaccataccta |
10422864 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 372 - 444
Target Start/End: Complemental strand, 13909866 - 13909794
Alignment:
| Q |
372 |
gctgcttctggacttgaaatcatcacacaaggacaacctaaaatgtgagacttgaacatagcaccatacctat |
444 |
Q |
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| T |
13909866 |
gctgcctcaggacttgatatcatcacacaaggacaacctagtatgtgtgtcttgaatatatctccatacctat |
13909794 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 509 - 582
Target Start/End: Complemental strand, 40094735 - 40094662
Alignment:
| Q |
509 |
gtaagtacaactcagatgataaatagttgcagggacatttgatatcatggggtgcagggttgaacccgcaattc |
582 |
Q |
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| T |
40094735 |
gtaagtacaactcagatggtaaaattttgcagggacatttgatatgttggaacgcaggtttgaacccacaattc |
40094662 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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