View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17793_high_63 (Length: 300)

Name: NF17793_high_63
Description: NF17793
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17793_high_63
NF17793_high_63
[»] chr1 (4 HSPs)
chr1 (14-300)||(46588896-46589181)
chr1 (36-87)||(30853911-30853961)
chr1 (36-87)||(14717370-14717420)
chr1 (39-87)||(22345043-22345090)
[»] scaffold0316 (1 HSPs)
scaffold0316 (36-83)||(12322-12368)
[»] chr6 (2 HSPs)
chr6 (36-87)||(32574389-32574439)
chr6 (18-87)||(16913264-16913329)
[»] chr4 (6 HSPs)
chr4 (18-86)||(43156713-43156777)
chr4 (39-87)||(37869547-37869594)
chr4 (36-87)||(9474637-9474687)
chr4 (39-101)||(9661771-9661836)
chr4 (55-87)||(7242912-7242944)
chr4 (39-87)||(28588497-28588544)
[»] chr7 (1 HSPs)
chr7 (36-81)||(8319255-8319300)
[»] chr2 (4 HSPs)
chr2 (39-87)||(3602921-3602968)
chr2 (39-87)||(32909012-32909059)
chr2 (39-101)||(25771363-25771428)
chr2 (39-87)||(16720948-16720995)
[»] chr5 (3 HSPs)
chr5 (16-77)||(37424938-37424996)
chr5 (39-101)||(31645747-31645812)
chr5 (39-87)||(34894047-34894094)
[»] chr3 (6 HSPs)
chr3 (36-87)||(20201186-20201236)
chr3 (36-87)||(20203368-20203418)
chr3 (36-87)||(21803466-21803516)
chr3 (36-87)||(35501886-35501936)
chr3 (39-101)||(1165527-1165592)
chr3 (42-87)||(43242746-43242791)
[»] chr8 (2 HSPs)
chr8 (14-86)||(9269958-9270026)
chr8 (47-87)||(2628892-2628932)


Alignment Details
Target: chr1 (Bit Score: 259; Significance: 1e-144; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 14 - 300
Target Start/End: Complemental strand, 46589181 - 46588896
Alignment:
Q  14 atcataaattacccctctttggtggtggatgaaggagaagaaaactaggtttttggtgatggctcacaagagaggagaaggggaagagtatgtactgagt 113  Q
    ||||||||| ||||||||||||||| |||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  46589181 atcataaatcacccctctttggtgg-ggatgaaggagaagaaaattaggtttttggtgacggctcacaagagaggagaaggggaagagtatgtactgagt 46589083  T
Q  114 atgaggttgtttatggttacttaagtaattaaatctttcaagatttcatgaaaacgacatcatcgtatctatcattatttatatgaaagtcaattatatg 213  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  46589082 atgaggttgtttatggttacttaagtaattaaatctttcaagatttcatgaaaacgacatcatcctatctatcattatttatatgaaagtcaattatatg 46588983  T
Q  214 taaataggaatgttccggttgagacgggagtagtaacagttatacacaatattttgtaccaaaagaggaacaattatagtagacgat 300  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46588982 taaataggaatgttccggttgagacgagagtagtaacagttatacacaatattttgtaccaaaagaggaacaattatagtagacgat 46588896  T

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Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 36 - 87
Target Start/End: Original strand, 30853911 - 30853961
Alignment:
Q  36 tggtggatgaaggagaagaaaactaggtttttggtgatggctcacaagagag 87  Q
    ||||||||||||||||||||| ||||| |||||||||||||||| |||||||    
T  30853911 tggtggatgaaggagaagaaa-ctagggttttggtgatggctcaaaagagag 30853961  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 36 - 87
Target Start/End: Original strand, 14717370 - 14717420
Alignment:
Q  36 tggtggatgaaggagaagaaaactaggtttttggtgatggctcacaagagag 87  Q
    |||||||||||||||||| |||||||  ||||||||| ||||||||||||||    
T  14717370 tggtggatgaaggagaag-aaactagagttttggtgacggctcacaagagag 14717420  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 39 - 87
Target Start/End: Original strand, 22345043 - 22345090
Alignment:
Q  39 tggatgaaggagaagaaaactaggtttttggtgatggctcacaagagag 87  Q
    ||||||||||||||| |||||||| ||||||||| ||||||| ||||||    
T  22345043 tggatgaaggagaag-aaactagggttttggtgacggctcactagagag 22345090  T

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Target: scaffold0316 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0316
Description:

Target: scaffold0316; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 36 - 83
Target Start/End: Original strand, 12322 - 12368
Alignment:
Q  36 tggtggatgaaggagaagaaaactaggtttttggtgatggctcacaag 83  Q
    ||||||||||||||||||||| ||||| ||||||||||||||||||||    
T  12322 tggtggatgaaggagaagaaa-ctaggattttggtgatggctcacaag 12368  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 36 - 87
Target Start/End: Complemental strand, 32574439 - 32574389
Alignment:
Q  36 tggtggatgaaggagaagaaaactaggtttttggtgatggctcacaagagag 87  Q
    |||||||||||||||||||||| |||| ||||||||| ||||||||||||||    
T  32574439 tggtggatgaaggagaagaaaa-tagggttttggtgacggctcacaagagag 32574389  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 18 - 87
Target Start/End: Complemental strand, 16913329 - 16913264
Alignment:
Q  18 taaattacccctctttggtggtggatgaaggagaagaaaactaggtttttggtgatggctcacaagagag 87  Q
    ||||| |||||||||||   |||||||||||||||| |||||||| ||||||||| ||||||||| ||||    
T  16913329 taaatcacccctctttg---gtggatgaaggagaag-aaactagggttttggtgacggctcacaaaagag 16913264  T

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Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 18 - 86
Target Start/End: Complemental strand, 43156777 - 43156713
Alignment:
Q  18 taaattacccctctttggtggtggatgaaggagaagaaaactaggtttttggtgatggctcacaagaga 86  Q
    ||||| |||||||||||   ||||||||||||||||||||||| | ||||||||| |||||||||||||    
T  43156777 taaatcacccctctttg---gtggatgaaggagaagaaaactaag-ttttggtgacggctcacaagaga 43156713  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 39 - 87
Target Start/End: Original strand, 37869547 - 37869594
Alignment:
Q  39 tggatgaaggagaagaaaactaggtttttggtgatggctcacaagagag 87  Q
    |||||||||||||||||| ||||| ||||||||| ||||||||||||||    
T  37869547 tggatgaaggagaagaaa-ctagggttttggtgacggctcacaagagag 37869594  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 36 - 87
Target Start/End: Original strand, 9474637 - 9474687
Alignment:
Q  36 tggtggatgaaggagaagaaaactaggtttttggtgatggctcacaagagag 87  Q
    |||| |||||||||||||||| ||||| ||||||||| ||||||||||||||    
T  9474637 tggttgatgaaggagaagaaa-ctagggttttggtgacggctcacaagagag 9474687  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 39 - 101
Target Start/End: Complemental strand, 9661836 - 9661771
Alignment:
Q  39 tggatgaaggagaagaaaactaggtttttggtgatggctcacaagagag----gagaaggggaagag 101  Q
    ||||||||||||||| |||||||| ||||||||| ||||||| ||||||    ||||||||||||||    
T  9661836 tggatgaaggagaag-aaactagggttttggtgacggctcactagagagaagagagaaggggaagag 9661771  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 55 - 87
Target Start/End: Original strand, 7242912 - 7242944
Alignment:
Q  55 aaactaggtttttggtgatggctcacaagagag 87  Q
    |||||||| ||||||||||||||||||||||||    
T  7242912 aaactagggttttggtgatggctcacaagagag 7242944  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 39 - 87
Target Start/End: Complemental strand, 28588544 - 28588497
Alignment:
Q  39 tggatgaaggagaagaaaactaggtttttggtgatggctcacaagagag 87  Q
    ||||||||||||||| |||||||| ||||||||| ||||||||| ||||    
T  28588544 tggatgaaggagaag-aaactaggattttggtgacggctcacaaaagag 28588497  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 36 - 81
Target Start/End: Complemental strand, 8319300 - 8319255
Alignment:
Q  36 tggtggatgaaggagaagaaaactaggtttttggtgatggctcaca 81  Q
    |||||||| |||||||||||||||||| ||||| ||||||||||||    
T  8319300 tggtggataaaggagaagaaaactagggttttgatgatggctcaca 8319255  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 39 - 87
Target Start/End: Complemental strand, 3602968 - 3602921
Alignment:
Q  39 tggatgaaggagaagaaaactaggtttttggtgatggctcacaagagag 87  Q
    |||||||||||||||||| ||||| ||||||||| ||||||||||||||    
T  3602968 tggatgaaggagaagaaa-ctaggattttggtgacggctcacaagagag 3602921  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 39 - 87
Target Start/End: Complemental strand, 32909059 - 32909012
Alignment:
Q  39 tggatgaaggagaagaaaactaggtttttggtgatggctcacaagagag 87  Q
    |||||||||||||||||| ||||| ||||||||| ||||||||||||||    
T  32909059 tggatgaaggagaagaaa-ctagggttttggtgacggctcacaagagag 32909012  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 39 - 101
Target Start/End: Complemental strand, 25771428 - 25771363
Alignment:
Q  39 tggatgaaggagaagaaaactaggtttttggtgatggctcacaagagag----gagaaggggaagag 101  Q
    ||||||||||||||| |||||||| ||||||||| ||||||| ||||||    ||||||||||||||    
T  25771428 tggatgaaggagaag-aaactagggttttggtgacggctcactagagagaagagagaaggggaagag 25771363  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 39 - 87
Target Start/End: Original strand, 16720948 - 16720995
Alignment:
Q  39 tggatgaaggagaagaaaactaggtttttggtgatggctcacaagagag 87  Q
    ||||||||||| |||||||||||| ||||||||| ||||| ||||||||    
T  16720948 tggatgaagga-aagaaaactaggattttggtgacggctcccaagagag 16720995  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000007; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 16 - 77
Target Start/End: Complemental strand, 37424996 - 37424938
Alignment:
Q  16 cataaattacccctctttggtggtggatgaaggagaagaaaactaggtttttggtgatggct 77  Q
    ||||||| |||||||||||||||   |||||||| |||||||||||| ||||||||| ||||    
T  37424996 cataaatcacccctctttggtgg---atgaaggaaaagaaaactagggttttggtgacggct 37424938  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 39 - 101
Target Start/End: Complemental strand, 31645812 - 31645747
Alignment:
Q  39 tggatgaaggagaagaaaactaggtttttggtgatggctcacaagagag----gagaaggggaagag 101  Q
    ||||||||||||||| |||||||| ||||||||| ||||||| ||||||    ||||||||||||||    
T  31645812 tggatgaaggagaag-aaactagggttttggtgacggctcactagagagaagagagaaggggaagag 31645747  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 39 - 87
Target Start/End: Original strand, 34894047 - 34894094
Alignment:
Q  39 tggatgaaggagaagaaaactaggtttttggtgatggctcacaagagag 87  Q
    |||||||||||||||||| ||||| ||||| || |||||||||||||||    
T  34894047 tggatgaaggagaagaaa-ctagggttttgatgttggctcacaagagag 34894094  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000007; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 36 - 87
Target Start/End: Original strand, 20201186 - 20201236
Alignment:
Q  36 tggtggatgaaggagaagaaaactaggtttttggtgatggctcacaagagag 87  Q
    |||||||||||||||||| |||||||| |||| |||| ||||||||||||||    
T  20201186 tggtggatgaaggagaag-aaactagggttttcgtgacggctcacaagagag 20201236  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 36 - 87
Target Start/End: Original strand, 20203368 - 20203418
Alignment:
Q  36 tggtggatgaaggagaagaaaactaggtttttggtgatggctcacaagagag 87  Q
    |||||||||||||||||| |||||||| |||| |||| ||||||||||||||    
T  20203368 tggtggatgaaggagaag-aaactagggttttcgtgacggctcacaagagag 20203418  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 36 - 87
Target Start/End: Complemental strand, 21803516 - 21803466
Alignment:
Q  36 tggtggatgaaggagaagaaaactaggtttttggtgatggctcacaagagag 87  Q
    |||| |||||||||||||||| ||||| ||||||||| ||||||||||||||    
T  21803516 tggtagatgaaggagaagaaa-ctagggttttggtgacggctcacaagagag 21803466  T

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Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 36 - 87
Target Start/End: Original strand, 35501886 - 35501936
Alignment:
Q  36 tggtggatgaaggagaagaaaactaggtttttggtgatggctcacaagagag 87  Q
    |||||||||||||||||| |||||||| ||| ||||| ||||||||||||||    
T  35501886 tggtggatgaaggagaag-aaactaggatttcggtgacggctcacaagagag 35501936  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 39 - 101
Target Start/End: Original strand, 1165527 - 1165592
Alignment:
Q  39 tggatgaaggagaagaaaactaggtttttggtgatggctcacaagagag----gagaaggggaagag 101  Q
    ||||||||||||||| |||||||| ||||||||| ||||||| ||||||    ||||||||||||||    
T  1165527 tggatgaaggagaag-aaactagggttttggtgacggctcactagagagaagagagaaggggaagag 1165592  T

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Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 42 - 87
Target Start/End: Complemental strand, 43242791 - 43242746
Alignment:
Q  42 atgaaggagaagaaaactaggtttttggtgatggctcacaagagag 87  Q
    ||||||||||||||||||||| |||  |||| ||||||||||||||    
T  43242791 atgaaggagaagaaaactaggatttatgtgacggctcacaagagag 43242746  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 14 - 86
Target Start/End: Complemental strand, 9270026 - 9269958
Alignment:
Q  14 atcataaattacccctctttggtggtggatgaaggagaagaaaactaggtttttggtgatggctcacaagaga 86  Q
    ||||||||| |||||||||||||||   |||||||||||| |||||||  |||| |||| |||||||||||||    
T  9270026 atcataaatcacccctctttggtgg---atgaaggagaag-aaactagagttttcgtgacggctcacaagaga 9269958  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 47 - 87
Target Start/End: Complemental strand, 2628932 - 2628892
Alignment:
Q  47 ggagaagaaaactaggtttttggtgatggctcacaagagag 87  Q
    |||||||||||||||| ||||||||| ||||||||| ||||    
T  2628932 ggagaagaaaactaggattttggtgacggctcacaaaagag 2628892  T

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