View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17793_high_64 (Length: 300)

Name: NF17793_high_64
Description: NF17793
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17793_high_64
NF17793_high_64
[»] chr4 (14 HSPs)
chr4 (1-290)||(28687345-28687636)
chr4 (3-148)||(54164549-54164697)
chr4 (3-172)||(13552753-13552917)
chr4 (94-175)||(33752710-33752791)
chr4 (84-149)||(32186634-32186699)
chr4 (92-171)||(53343707-53343786)
chr4 (76-162)||(17431119-17431205)
chr4 (76-150)||(28687620-28687694)
chr4 (76-148)||(16854786-16854858)
chr4 (104-148)||(17430738-17430782)
chr4 (105-176)||(22224424-22224495)
chr4 (76-174)||(34665137-34665235)
chr4 (105-175)||(55243777-55243847)
chr4 (105-174)||(44380515-44380584)
[»] chr5 (17 HSPs)
chr5 (20-172)||(25905959-25906114)
chr5 (1-176)||(13657546-13657724)
chr5 (84-174)||(24490693-24490782)
chr5 (20-171)||(22297862-22298016)
chr5 (85-176)||(25906125-25906216)
chr5 (51-176)||(6843079-6843207)
chr5 (1-174)||(17047936-17048111)
chr5 (84-171)||(22297764-22297851)
chr5 (77-148)||(29673698-29673769)
chr5 (83-174)||(38298693-38298784)
chr5 (79-173)||(2344626-2344720)
chr5 (77-174)||(29673290-29673386)
chr5 (111-174)||(12272502-12272564)
chr5 (76-174)||(13657708-13657806)
chr5 (76-154)||(15773726-15773804)
chr5 (76-174)||(38900222-38900319)
chr5 (76-176)||(5161062-5161160)
[»] chr8 (15 HSPs)
chr8 (1-176)||(33892033-33892211)
chr8 (76-175)||(33892195-33892294)
chr8 (34-173)||(9861568-9861710)
chr8 (83-140)||(36874343-36874400)
chr8 (76-175)||(37037263-37037360)
chr8 (1-141)||(10069883-10070034)
chr8 (79-178)||(29242427-29242525)
chr8 (76-139)||(29242831-29242894)
chr8 (83-173)||(31212313-31212403)
chr8 (56-148)||(10069995-10070090)
chr8 (79-176)||(15229613-15229710)
chr8 (76-148)||(6906432-6906504)
chr8 (76-148)||(8791735-8791807)
chr8 (76-172)||(27503649-27503745)
chr8 (105-173)||(36102133-36102201)
[»] chr2 (20 HSPs)
chr2 (1-172)||(980920-981092)
chr2 (1-148)||(12874705-12874855)
chr2 (76-148)||(37897600-37897672)
chr2 (76-175)||(16192571-16192671)
chr2 (41-132)||(25330675-25330769)
chr2 (104-176)||(39786313-39786385)
chr2 (84-175)||(18509495-18509586)
chr2 (56-147)||(12874816-12874910)
chr2 (76-171)||(16127920-16128015)
chr2 (83-149)||(27847998-27848064)
chr2 (1-169)||(16127999-16128169)
chr2 (76-148)||(981076-981147)
chr2 (1-68)||(4921271-4921338)
chr2 (76-171)||(40152701-40152795)
chr2 (84-173)||(20972389-20972478)
chr2 (84-148)||(27847882-27847946)
chr2 (50-175)||(7328331-7328459)
chr2 (20-148)||(35926824-35926955)
chr2 (84-148)||(35926749-35926813)
chr2 (41-116)||(39159216-39159294)
[»] chr3 (15 HSPs)
chr3 (76-174)||(8896026-8896124)
chr3 (20-176)||(4304140-4304299)
chr3 (84-172)||(30430271-30430359)
chr3 (84-171)||(2928096-2928183)
chr3 (76-175)||(6931099-6931198)
chr3 (76-141)||(28725670-28725734)
chr3 (83-174)||(4304310-4304404)
chr3 (108-148)||(25799513-25799553)
chr3 (1-139)||(10821864-10822005)
chr3 (105-184)||(46835629-46835708)
chr3 (76-174)||(32618945-32619043)
chr3 (84-138)||(45404832-45404886)
chr3 (94-175)||(30172069-30172150)
chr3 (105-174)||(43862527-43862596)
chr3 (108-148)||(27614039-27614079)
[»] chr7 (19 HSPs)
chr7 (20-175)||(31172275-31172433)
chr7 (1-173)||(31198379-31198553)
chr7 (7-175)||(19105254-19105424)
chr7 (3-172)||(9686376-9686540)
chr7 (76-148)||(7760756-7760828)
chr7 (76-172)||(20164620-20164716)
chr7 (84-174)||(7760607-7760697)
chr7 (75-173)||(29635235-29635332)
chr7 (87-148)||(20165011-20165072)
chr7 (79-148)||(23797206-23797275)
chr7 (20-173)||(8129879-8130034)
chr7 (76-176)||(15329854-15329955)
chr7 (76-148)||(31198323-31198395)
chr7 (84-148)||(37081261-37081325)
chr7 (89-176)||(3555362-3555448)
chr7 (84-178)||(19105421-19105515)
chr7 (20-176)||(21657294-21657453)
chr7 (82-176)||(35054442-35054536)
chr7 (105-173)||(43725998-43726066)
[»] chr6 (12 HSPs)
chr6 (1-171)||(13340445-13340618)
chr6 (84-175)||(31298722-31298813)
chr6 (56-176)||(13340579-13340702)
chr6 (76-173)||(30519681-30519777)
chr6 (76-175)||(31298883-31298982)
chr6 (84-148)||(24704332-24704396)
chr6 (83-176)||(12290135-12290227)
chr6 (76-148)||(12290005-12290077)
chr6 (88-176)||(33599847-33599935)
chr6 (76-148)||(34637583-34637655)
chr6 (76-162)||(10284361-10284447)
chr6 (76-141)||(19045049-19045114)
[»] chr1 (16 HSPs)
chr1 (76-178)||(22679485-22679587)
chr1 (76-178)||(30749099-30749201)
chr1 (76-178)||(30770550-30770652)
chr1 (20-120)||(51941968-51942071)
chr1 (84-175)||(16706502-16706596)
chr1 (76-175)||(14760033-14760131)
chr1 (50-148)||(13765581-13765682)
chr1 (76-178)||(30746920-30747021)
chr1 (76-178)||(30768371-30768472)
chr1 (84-174)||(35294332-35294422)
chr1 (76-173)||(30748951-30749048)
chr1 (76-173)||(30770402-30770499)
chr1 (91-173)||(15393145-15393227)
chr1 (89-146)||(20171415-20171472)
chr1 (112-173)||(51680854-51680915)
chr1 (76-140)||(8819351-8819414)
[»] scaffold0025 (2 HSPs)
scaffold0025 (1-68)||(63933-64000)
scaffold0025 (56-148)||(63961-64056)
[»] scaffold0328 (1 HSPs)
scaffold0328 (88-150)||(11623-11685)
[»] scaffold0007 (1 HSPs)
scaffold0007 (84-154)||(175528-175598)


Alignment Details
Target: chr4 (Bit Score: 177; Significance: 2e-95; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 1 - 290
Target Start/End: Complemental strand, 28687636 - 28687345
Alignment:
Q  1 cctctaaaaattttcagcgatgaaattagtccctgctctggtgtaatgttcaatgtagagcagggact---ttcacatatgaaaatttttagagggacca 97  Q
    ||||||||| |||||| | || ||||||||||||||||| |||||||| | ||||||||||| |||||   |||||||||||||||||||||| ||||||    
T  28687636 cctctaaaatttttcatcaataaaattagtccctgctctagtgtaatgcttaatgtagagcacggactaatttcacatatgaaaatttttagatggacca 28687537  T
Q  98 aaaacataaggaatattttagagagactaaaattaaatgttggtgtatttaaaaggatcatttacatatttaaccctaattcttttcagcaaatattaat 197  Q
    ||| |||||||||||||||||||||| ||||||||||||||||| |||||||| || ||||||||||||||||||||||||||||| |||||||||||||    
T  28687536 aaagcataaggaatattttagagagattaaaattaaatgttggtatatttaaagggctcatttacatatttaaccctaattcttttaagcaaatattaat 28687437  T
Q  198 ttttgttcacgcacttatgcaaatattaatagttatagannnnnnngacaagtaatagttatagttagttactactatgatatcatgtctatc 290  Q
    |||||||||||||||||||||||||||||||||||||||       ||||||||||||||||| ||||||||||| |||||| ||| ||||||    
T  28687436 ttttgttcacgcacttatgcaaatattaatagttataga-ttttttgacaagtaatagttatatttagttactaccatgataccatatctatc 28687345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 3 - 148
Target Start/End: Original strand, 54164549 - 54164697
Alignment:
Q  3 tctaaaaattttcagcgatgaaattagtccctgctctggtgtaatgttcaatgtagagcagggact---ttcacatatgaaaatttttagagggaccaaa 99  Q
    ||||||| ||||||   |||||||||||| || |||| |||||||  |||||||||||||| ||||   |||| | ||||||| ||||||||||||| ||    
T  54164549 tctaaaatttttcatttatgaaattagtctctactctagtgtaatactcaatgtagagcagtgactaatttcataaatgaaaaattttagagggaccgaa 54164648  T
Q  100 aacataaggaatattttagagagactaaaattaaatgttggtgtattta 148  Q
    ||| |||  ||||||||| |||||||||||| |||||||||| ||||||    
T  54164649 aacctaaaaaatattttatagagactaaaatcaaatgttggtatattta 54164697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 3 - 172
Target Start/End: Original strand, 13552753 - 13552917
Alignment:
Q  3 tctaaaaattttcagcgatgaaattagtccctgctctggtgtaatgttcaatgtagagcagggactttcacatatgaaaatttttagagggaccaaaaac 102  Q
    ||||||| ||||||   |||||||||||| ||||||| |||||||  |||||||||||||||||||     | ||||||| ||||||| ||||||||| |    
T  13552753 tctaaaatttttcatttatgaaattagtctctgctctagtgtaatactcaatgtagagcagggact-----aaatgaaaaattttagaaggaccaaaagc 13552847  T
Q  103 ataaggaatattttagagagactaaaattaaatgttggtgtatttaaaaggatcatttacatatttaacc 172  Q
     |||  |||||||||  | ||||||||| |||| ||| | ||||||  ||||  |||||| |||||||||    
T  13552848 ctaaataatattttatggggactaaaatcaaatattgatatatttaggaggactatttacttatttaacc 13552917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 94 - 175
Target Start/End: Original strand, 33752710 - 33752791
Alignment:
Q  94 accaaaaacataaggaatattttagagagactaaaattaaatgttggtgtatttaaaaggatcatttacatatttaacccta 175  Q
    ||||||| | ||| ||||||||||| ||||||||||| |||||||| | |||||||||||| | ||||| ||||||||||||    
T  33752710 accaaaagcctaaagaatattttagggagactaaaatcaaatgttgatatatttaaaaggaccgtttacttatttaacccta 33752791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 84 - 149
Target Start/End: Original strand, 32186634 - 32186699
Alignment:
Q  84 ttttagagggaccaaaaacataaggaatattttagagagactaaaattaaatgttggtgtatttaa 149  Q
    |||||||| |||||||| | ||| |||||||||||||  ||||||||||||||||||| |||||||    
T  32186634 ttttagagagaccaaaagcctaaagaatattttagaggaactaaaattaaatgttggtatatttaa 32186699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 92 - 171
Target Start/End: Complemental strand, 53343786 - 53343707
Alignment:
Q  92 ggaccaaaaacataaggaatattttagagagactaaaattaaatgttggtgtatttaaaaggatcatttacatatttaac 171  Q
    ||||| ||||| |||| |||||||||  ||||||||||| ||| |||||| ||||||| |||| ||||||| ||||||||    
T  53343786 ggacccaaaacctaagaaatattttaacgagactaaaatcaaacgttggtatatttaagaggaccatttacttatttaac 53343707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 76 - 162
Target Start/End: Original strand, 17431119 - 17431205
Alignment:
Q  76 atgaaaatttttagagggaccaaaaacataaggaatattttagagagactaaaattaaatgttggtgtatttaaaaggatcatttac 162  Q
    |||||||||||| |||||||||||| | |||  |||||||||| | ||||||||| |||||||| | |||||| | ||| |||||||    
T  17431119 atgaaaatttttggagggaccaaaagcctaaaaaatattttagggggactaaaatcaaatgttgatatatttagatggaccatttac 17431205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 76 - 150
Target Start/End: Original strand, 28687620 - 28687694
Alignment:
Q  76 atgaaaatttttagagggaccaaaaacataaggaatattttagagagactaaaattaaatgttggtgtatttaaa 150  Q
    ||||||| ||||||||||||||||| | |||  ||||||||||||  |||||||| |||||||| | ||||||||    
T  28687620 atgaaaaattttagagggaccaaaaccctaaaaaatattttagagtaactaaaatcaaatgttgatatatttaaa 28687694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 76 - 148
Target Start/End: Original strand, 16854786 - 16854858
Alignment:
Q  76 atgaaaatttttagagggaccaaaaacataaggaatattttagagagactaaaattaaatgttggtgtattta 148  Q
    ||||||||||||| ||| | ||||||  ||||||||||||||||  |||||||||| ||||||| | ||||||    
T  16854786 atgaaaatttttaaaggaatcaaaaaactaaggaatattttagacggactaaaatttaatgttgatctattta 16854858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 104 - 148
Target Start/End: Complemental strand, 17430782 - 17430738
Alignment:
Q  104 taaggaatattttagagagactaaaattaaatgttggtgtattta 148  Q
    ||||||||||||||||| ||||||||| |||||||||| ||||||    
T  17430782 taaggaatattttagagggactaaaatcaaatgttggtatattta 17430738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 105 - 176
Target Start/End: Original strand, 22224424 - 22224495
Alignment:
Q  105 aaggaatattttagagagactaaaattaaatgttggtgtatttaaaaggatcatttacatatttaaccctaa 176  Q
    |||||||||||||||| ||||||||  ||| |||||| |||||| | ||| |||  ||||||||||||||||    
T  22224424 aaggaatattttagagggactaaaacgaaaagttggtatatttatagggaccataaacatatttaaccctaa 22224495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 76 - 174
Target Start/End: Original strand, 34665137 - 34665235
Alignment:
Q  76 atgaaaatttttagagggaccaaaaacataaggaatattttagagagactaaaattaaatgttggtgtatttaaaaggatcatttacatatttaaccct 174  Q
    |||||| ||| |||| ||| ||||| | |||  |||||||||| | ||||||||| |||||||||| ||||||| |  | ||||||| |||||||||||    
T  34665137 atgaaattttgtagaaggaacaaaagcctaaaaaatattttagggtgactaaaatcaaatgttggtatatttaatattaccatttacttatttaaccct 34665235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 105 - 175
Target Start/End: Complemental strand, 55243847 - 55243777
Alignment:
Q  105 aaggaatattttagagagactaaaattaaatgttggtgtatttaaaaggatcatttacatatttaacccta 175  Q
    |||||| ||||||||||||||||||  ||| |||||| |||||| ||||| ||   |||||||||||||||    
T  55243847 aaggaaaattttagagagactaaaacaaaacgttggtatatttataaggagcaaaaacatatttaacccta 55243777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 105 - 174
Target Start/End: Complemental strand, 44380584 - 44380515
Alignment:
Q  105 aaggaatattttagagagactaaaattaaatgttggtgtatttaaaaggatcatttacatatttaaccct 174  Q
    |||||| ||||||||||||||||||  ||| |||||| |||||| ||||| ||   ||||||||||||||    
T  44380584 aaggaaaattttagagagactaaaacaaaaagttggtatatttataaggaccagaaacatatttaaccct 44380515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 58; Significance: 2e-24; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 20 - 172
Target Start/End: Complemental strand, 25906114 - 25905959
Alignment:
Q  20 atgaaattagtccctgctctggtgtaatgttcaatgtagagcagggact---ttcacatatgaaaatttttagagggaccaaaaacataaggaatatttt 116  Q
    |||||||||||| ||||||| |||||||  |||||||||||||||||||   || | | ||||||| ||||||||||||||||| | || | |||| |||    
T  25906114 atgaaattagtctctgctctagtgtaatactcaatgtagagcagggactaattttatagatgaaaaattttagagggaccaaaagcctatgaaatacttt 25906015  T
Q  117 agagagactaaaattaaatgttggtgtatttaaaaggatcatttacatatttaacc 172  Q
    || | ||||||||| |||||||||| ||| |||  ||||||||||| |||||||||    
T  25906014 agggggactaaaatcaaatgttggtatatataaggggatcatttacttatttaacc 25905959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 176
Target Start/End: Complemental strand, 13657724 - 13657546
Alignment:
Q  1 cctctaaaaattttcagcgatgaaattagtccctgctctggtgtaatgttcaatgtagagcagggact---ttcacatatgaaaatttttagagggacca 97  Q
    ||||||||||||||||   ||||||||||||| |||||| |||||||  |||||||||||||   |||   |||| | |||||| ||||||||| |||||    
T  13657724 cctctaaaaattttcatgtatgaaattagtccatgctctagtgtaatactcaatgtagagcaaaaactaatttcatagatgaaattttttagagagacca 13657625  T
Q  98 aaaacataaggaatattttagagagactaaaattaaatgttggtgtatttaaaaggatcatttacatatttaaccctaa 176  Q
    |||   ||| |||||||||||||  |||||||| ||||||| || |||||||| ||| ||||||  ||||||| |||||    
T  13657624 aaagtctaaagaatattttagaggaactaaaatcaaatgtttgtatatttaaagggaccatttatttatttaatcctaa 13657546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 84 - 174
Target Start/End: Complemental strand, 24490782 - 24490693
Alignment:
Q  84 ttttagagggaccaaaaacataaggaatattttagagagactaaaattaaatgttggtgtatttaaaaggatcatttacatatttaaccct 174  Q
    |||| |||||||||||||| ||||  ||||||||||||||||||||| |||||||||| || ||| ||||| ||||||| |||||||||||    
T  24490782 ttttggagggaccaaaaacttaagagatattttagagagactaaaatcaaatgttggtata-ttagaaggaccatttacttatttaaccct 24490693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 20 - 171
Target Start/End: Original strand, 22297862 - 22298016
Alignment:
Q  20 atgaaattagtccctgctctggtgtaatgttcaatgtagagcagggact---ttcacatatgaaaatttttagagggaccaaaaacataaggaatatttt 116  Q
    ||||||||||||||||| ||  ||||||  |||||||||||| | ||||   |||| | ||||||| ||||||||||||||||||| |||  ||||||||    
T  22297862 atgaaattagtccctgcgctattgtaatactcaatgtagagctgagactaatttcataaatgaaaaattttagagggaccaaaaacttaaaaaatatttt 22297961  T
Q  117 agagagactaaaattaaatgttggtgtatttaaaaggatcatttacatatttaac 171  Q
    |  | ||||||||| ||||||| || ||||||   ||| ||||||| ||||||||    
T  22297962 aaggggactaaaatcaaatgttagtatatttagggggaccatttacttatttaac 22298016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 85 - 176
Target Start/End: Original strand, 25906125 - 25906216
Alignment:
Q  85 tttagagggaccaaaaacataaggaatattttagagagactaaaattaaatgttggtgtatttaaaaggatcatttacatatttaaccctaa 176  Q
    |||||||||||||||| | ||| |||||||| || | ||||||||| |||||||| | ||||||  ||||| |||||| |||||||||||||    
T  25906125 tttagagggaccaaaagcctaaagaatatttaagggggactaaaatcaaatgttgatatatttaggaggattatttacttatttaaccctaa 25906216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 51 - 176
Target Start/End: Complemental strand, 6843207 - 6843079
Alignment:
Q  51 caatgtagagcagggact---ttcacatatgaaaatttttagagggaccaaaaacataaggaatattttagagagactaaaattaaatgttggtgtattt 147  Q
    |||||||||||||||| |   |||| | ||||||| ||||||||||||||||||  ||||||||||| |||   ||||||||| ||||||| || |||||    
T  6843207 caatgtagagcagggattaatttcatagatgaaaaattttagagggaccaaaaatctaaggaatattctaggaggactaaaatcaaatgtttgtatattt 6843108  T
Q  148 aaaaggatcatttacatatttaaccctaa 176  Q
    |||  ||  |||||  |||||||||||||    
T  6843107 aaagagactatttatttatttaaccctaa 6843079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 174
Target Start/End: Original strand, 17047936 - 17048111
Alignment:
Q  1 cctctaaaaattttcagcgatgaaattagtccctgctctggtgtaatgttcaatgtagagcagggact---ttcacatatgaaaatttttagagggacca 97  Q
    ||||||||| ||||||   ||||| |||||| |||||||  ||||||  |||||||||||||| ||||   || | | |||||| |||||||||| ||||    
T  17047936 cctctaaaatttttcatttatgaagttagtctctgctctactgtaatactcaatgtagagcagagactaatttaatagatgaaattttttagaggaacca 17048035  T
Q  98 aaaacataaggaatattttagagagactaaaattaaatgttggtgtatttaaaaggatcatttacatatttaaccct 174  Q
    ||| | |||  ||| |||||| | ||||||| | |||||||||| |||||||  |||||||| || |||||||||||    
T  17048036 aaagcctaaaaaatcttttagggggactaaa-tcaaatgttggtatatttaaggggatcattcacttatttaaccct 17048111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 84 - 171
Target Start/End: Complemental strand, 22297851 - 22297764
Alignment:
Q  84 ttttagagggaccaaaaacataaggaatattttagagagactaaaattaaatgttggtgtatttaaaaggatcatttacatatttaac 171  Q
    ||||| ||||||||||||| |||  |||||||||||| ||||||||| |||||||| | |||||| | |||  |||||| ||||||||    
T  22297851 ttttaaagggaccaaaaacctaaaaaatattttagagggactaaaatcaaatgttgatatatttagagggactatttacttatttaac 22297764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 77 - 148
Target Start/End: Original strand, 29673698 - 29673769
Alignment:
Q  77 tgaaaatttttagagggaccaaaaacataaggaatattttagagagactaaaattaaatgttggtgtattta 148  Q
    ||||||||||| |||||||||||| | |||| ||||||||||||  |||||||| ||||||| || ||||||    
T  29673698 tgaaaatttttggagggaccaaaaccttaagaaatattttagaggaactaaaatcaaatgtttgtatattta 29673769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 83 - 174
Target Start/End: Complemental strand, 38298784 - 38298693
Alignment:
Q  83 tttttagagggaccaaaaacataaggaatattttagagagactaaaattaaatgttggtgtatttaaaaggatcatttacatatttaaccct 174  Q
    ||||||||| ||| |||||| ||| ||||||||||||| |||| |||| |||| ||| | |||||| |  |||||||||| |||||||||||    
T  38298784 tttttagagagacaaaaaacctaaagaatattttagagggacttaaatcaaatattgatatatttagactgatcatttacttatttaaccct 38298693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 79 - 173
Target Start/End: Original strand, 2344626 - 2344720
Alignment:
Q  79 aaaatttttagagggaccaaaaacataaggaatattttagagagactaaaattaaatgttggtgtatttaaaaggatcatttacatatttaaccc 173  Q
    |||| ||||| |||||||||||   |||||||||| ||||||  |||||||| |||||||||| ||||||  ||||  |||||| ||||||||||    
T  2344626 aaaaattttaaagggaccaaaagactaaggaatatgttagaggaactaaaataaaatgttggtctatttaggaggactatttacttatttaaccc 2344720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 77 - 174
Target Start/End: Complemental strand, 29673386 - 29673290
Alignment:
Q  77 tgaaaatttttagagggaccaaaaacataaggaatattttagagagactaaaattaaatgttggtgtatttaaaaggatcatttacatatttaaccct 174  Q
    ||||| |||||||||||| ||||| | |||  ||||||||||   ||||||||| |||||||||| |||||||  ||| ||||||| |||||||||||    
T  29673386 tgaaattttttagagggaacaaaatcctaaa-aatattttaggaggactaaaatcaaatgttggtatatttaaggggaccatttacttatttaaccct 29673290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 111 - 174
Target Start/End: Complemental strand, 12272564 - 12272502
Alignment:
Q  111 tattttagagagactaaaattaaatgttggtgtatttaaaaggatcatttacatatttaaccct 174  Q
    |||||||||||||||||||| |||||||||| ||||||  | |||| ||| |||||||||||||    
T  12272564 tattttagagagactaaaatcaaatgttggtatatttaggatgatc-tttgcatatttaaccct 12272502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 76 - 174
Target Start/End: Original strand, 13657708 - 13657806
Alignment:
Q  76 atgaaaatttttagagggaccaaaaacataaggaatattttagagagactaaaattaaatgttggtgtatttaaaaggatcatttacatatttaaccct 174  Q
    ||||||||||||||||||| ||||| |  ||  ||||||||||  | |||||||| ||||||| || ||||| | ||||  |||||| |||||||||||    
T  13657708 atgaaaatttttagagggaacaaaagccaaaataatattttaggaaaactaaaatcaaatgttagtatatttcagaggactatttacttatttaaccct 13657806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 76 - 154
Target Start/End: Original strand, 15773726 - 15773804
Alignment:
Q  76 atgaaaatttttagagggaccaaaaacataaggaatattttagagagactaaaattaaatgttggtgtatttaaaagga 154  Q
    |||||| ||||| |||||||||||| | ||||| |||||||||  |||||||||| || |||| || |||||| |||||    
T  15773726 atgaaattttttggagggaccaaaagcctaagggatattttaggaagactaaaatcaattgttagtatatttagaagga 15773804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 76 - 174
Target Start/End: Complemental strand, 38900319 - 38900222
Alignment:
Q  76 atgaaaatttttagagggaccaaaaacataaggaatattttagagagactaaaattaaatgttggtgtatttaaaaggatcatttacatatttaaccct 174  Q
    |||||| ||||| | || ||||||| |||||  |||||||||| ||||||||||| |||| ||||| |||||| | |||  |||||| |||||||||||    
T  38900319 atgaaattttttggtggaaccaaaagcataaaaaatattttag-gagactaaaataaaatattggtatatttagagggaaaatttacttatttaaccct 38900222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 76 - 176
Target Start/End: Original strand, 5161062 - 5161160
Alignment:
Q  76 atgaaaatttttagagggaccaaaaacataaggaatattttagagagactaaaattaaatgttggtgtatttaaaaggatcatttacatatttaacccta 175  Q
    ||||||||||||||||| | ||||||| |||  |||||||||| | || |||||| |||||||  | ||||||| |  ||||||||| ||||||||||||    
T  5161062 atgaaaatttttagagg-atcaaaaacctaaataatattttaggg-gagtaaaatcaaatgttaatatatttaagaaaatcatttacttatttaacccta 5161159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 57; Significance: 8e-24; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 1 - 176
Target Start/End: Complemental strand, 33892211 - 33892033
Alignment:
Q  1 cctctaaaaattttcagcgatgaaattagtccctgctctggtgtaatgttcaatgtagagcagggact---ttcacatatgaaaatttttagagggacca 97  Q
    ||||||||| ||||||   |||||||||||||||| ||| || ||||  ||||||||||| | |||||   |||| | ||||||||||||||| ||||||    
T  33892211 cctctaaaatttttcatttatgaaattagtccctgatctagtctaatactcaatgtagagtatggactaatttcatagatgaaaatttttagaaggacca 33892112  T
Q  98 aaaacataaggaatattttagagagactaaaattaaatgttggtgtatttaaaaggatcatttacatatttaaccctaa 176  Q
    ||||| ||| |||||||||   | ||||||||| |||||||||| ||||||| || |  |||||| |||||||||||||    
T  33892111 aaaacctaaagaatattttgaggggactaaaatcaaatgttggtatatttaagagaactatttacttatttaaccctaa 33892033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 76 - 175
Target Start/End: Original strand, 33892195 - 33892294
Alignment:
Q  76 atgaaaatttttagagggaccaaaaacataaggaatattttagagagactaaaattaaatgttggtgtatttaaaaggatcatttacatatttaacccta 175  Q
    ||||||| ||||||||||||||||||||||| |||||||||| || ||||||||| |||||||||| ||||||| | |||  ||||| ||||||||||||    
T  33892195 atgaaaaattttagagggaccaaaaacataaagaatattttaaagggactaaaatcaaatgttggtatatttaagaagattgtttacttatttaacccta 33892294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 34 - 173
Target Start/End: Complemental strand, 9861710 - 9861568
Alignment:
Q  34 tgctctggtgtaatgttcaatgtagagcagggact---ttcacatatgaaaatttttagagggaccaaaaacataaggaatattttagagagactaaaat 130  Q
    |||||| |||||||  | |||||||||||||||||   |||| | ||||||| ||||||||||||||||| | ||| |||||||||| || |||||||||    
T  9861710 tgctctagtgtaatacttaatgtagagcagggactaatttcataaatgaaaaattttagagggaccaaaagcctaaagaatattttatagggactaaaat 9861611  T
Q  131 taaatgttggtgtatttaaaaggatcatttacatatttaaccc 173  Q
     |||||||| | ||||||  ||||  |||||| ||||||||||    
T  9861610 caaatgttgatatatttaggaggactatttacttatttaaccc 9861568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 83 - 140
Target Start/End: Complemental strand, 36874400 - 36874343
Alignment:
Q  83 tttttagagggaccaaaaacataaggaatattttagagagactaaaattaaatgttgg 140  Q
    |||||||||||||||||||| |||||||||||||||||  ||||||||||||||||||    
T  36874400 tttttagagggaccaaaaacctaaggaatattttagaggaactaaaattaaatgttgg 36874343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 76 - 175
Target Start/End: Original strand, 37037263 - 37037360
Alignment:
Q  76 atgaaaatttttagagggaccaaaaacataaggaatattttagagagactaaaattaaatgttggtgtatttaaaaggatcatttacatatttaacccta 175  Q
    ||||||| ||||| |||||||||||  |||||||||||||||||| ||||||||| |||||||||  |||||| || || ||||||| ||||||||||||    
T  37037263 atgaaaaatttta-agggaccaaaagtataaggaatattttagagggactaaaatcaaatgttggaatatttagaa-gaccatttacttatttaacccta 37037360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 1 - 141
Target Start/End: Complemental strand, 10070034 - 10069883
Alignment:
Q  1 cctctaaaaattttcagcgatgaaattagtccctgctctggtgtaatgttcaatgtagagcagggact-----------ttcacatatgaaaatttttag 89  Q
    ||||||||| |||||| | |||||||||||||||||||| |||||||  |||||||||||||  ||||           |||| | ||||||| ||||||    
T  10070034 cctctaaaatttttcatctatgaaattagtccctgctctagtgtaatactcaatgtagagcatagactaattaattgaattcatagatgaaaaattttag 10069935  T
Q  90 agggaccaaaaacataaggaatattttagagagactaaaattaaatgttggt 141  Q
    | ||||||||| | ||| ||||||||||||| |  |||||||||||||||||    
T  10069934 aaggaccaaaatcctaaagaatattttagaggggttaaaattaaatgttggt 10069883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 79 - 178
Target Start/End: Complemental strand, 29242525 - 29242427
Alignment:
Q  79 aaaatttttagagggaccaaaaacataaggaatattttagagagactaaaattaaatgttggtgtatttaaaaggatcatttacatatttaaccctaatt 178  Q
    |||| ||||||||| ||||||| | ||| ||||||||||||| ||||||||| |||||||||| | |||| | |||  | |||| |||||||||||||||    
T  29242525 aaaacttttagaggaaccaaaagcctaatgaatattttagagggactaaaataaaatgttggtat-tttagagggacaagttacttatttaaccctaatt 29242427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 76 - 139
Target Start/End: Original strand, 29242831 - 29242894
Alignment:
Q  76 atgaaaatttttagagggaccaaaaacataaggaatattttagagagactaaaattaaatgttg 139  Q
    |||||||||||| |||||||| ||||| |||| ||| |||||||| ||||||||| ||||||||    
T  29242831 atgaaaatttttggagggaccgaaaacctaagaaattttttagagggactaaaatcaaatgttg 29242894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 83 - 173
Target Start/End: Complemental strand, 31212403 - 31212313
Alignment:
Q  83 tttttagagggaccaaaaacataaggaatattttagagagactaaaattaaatgttggtgtatttaaaaggatcatttacatatttaaccc 173  Q
    |||||||||||||||||| | ||| ||||||||||  | ||||||||| |||||||| | |||||||  |||  |||||| ||||||||||    
T  31212403 tttttagagggaccaaaagcctaaagaatattttatggggactaaaatcaaatgttgatatatttaaggggactatttacttatttaaccc 31212313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 56 - 148
Target Start/End: Original strand, 10069995 - 10070090
Alignment:
Q  56 tagagcagggact---ttcacatatgaaaatttttagagggaccaaaaacataaggaatattttagagagactaaaattaaatgttggtgtattta 148  Q
    |||||||||||||   |||| | ||||||| ||||||||||||||||||| |||  ||||||||||   || |||||| |||| ||||| ||||||    
T  10069995 tagagcagggactaatttcatagatgaaaaattttagagggaccaaaaacctaaaaaatattttaggaggattaaaataaaatattggtatattta 10070090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 79 - 176
Target Start/End: Complemental strand, 15229710 - 15229613
Alignment:
Q  79 aaaatttttagagggaccaaaaacataaggaatattttagagagactaaaattaaatgttggtgtatttaaaaggatcatttacatatttaaccctaa 176  Q
    |||| ||||||||||| |||||    || |||||||||| || ||||||||| |||||||||| |||||||  | |  |||||| |||||||||||||    
T  15229710 aaaaattttagagggatcaaaagtcaaaagaatattttatagggactaaaataaaatgttggtatatttaagggaactatttacttatttaaccctaa 15229613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 76 - 148
Target Start/End: Original strand, 6906432 - 6906504
Alignment:
Q  76 atgaaaatttttagagggaccaaaaacataaggaatattttagagagactaaaattaaatgttggtgtattta 148  Q
    |||||||||||| |||||| ||||| | |||  |||||||||  | ||||||||| |||||||||| ||||||    
T  6906432 atgaaaatttttggagggatcaaaagcctaaaaaatattttatggggactaaaatcaaatgttggtatattta 6906504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 76 - 148
Target Start/End: Complemental strand, 8791807 - 8791735
Alignment:
Q  76 atgaaaatttttagagggaccaaaaacataaggaatattttagagagactaaaattaaatgttggtgtattta 148  Q
    ||||||| ||||||||||||||||||| |||  |||||||| | | || |||||| |||||||| | ||||||    
T  8791807 atgaaaaattttagagggaccaaaaacctaacaaatattttggggtgagtaaaatcaaatgttgatatattta 8791735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 76 - 172
Target Start/End: Original strand, 27503649 - 27503745
Alignment:
Q  76 atgaaaatttttagagggaccaaaaacataaggaatattttagagagactaaaattaaatgttggtgtatttaaaaggatcatttacatatttaacc 172  Q
    ||||||| ||| ||||||||||||| | |||  |||||||||  || |||||||| |||| ||| | |||||||  | ||||||||| |||||||||    
T  27503649 atgaaaaatttcagagggaccaaaagcctaaataatattttatggaaactaaaatcaaatattgatatatttaagtgaatcatttacttatttaacc 27503745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 105 - 173
Target Start/End: Complemental strand, 36102201 - 36102133
Alignment:
Q  105 aaggaatattttagagagactaaaattaaatgttggtgtatttaaaaggatcatttacatatttaaccc 173  Q
    |||||| ||||||||| ||||||||| ||| |||||| |||||| | ||||||   |||||||||||||    
T  36102201 aaggaaaattttagagggactaaaatgaaaagttggtatatttatagggatcaaaaacatatttaaccc 36102133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 57; Significance: 8e-24; HSPs: 20)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 1 - 172
Target Start/End: Complemental strand, 981092 - 980920
Alignment:
Q  1 cctctaaaaattttcagcgatgaaattagtccctgctctggtgtaatgttcaatgtagagcagggact---ttcacatatgaaaatttttagagggacca 97  Q
    ||||||||| ||||||   |||||||||||| ||||||| |||||||  ||||||| |||||| ||||   |||| | || ||| ||||||| |||||||    
T  981092 cctctaaaatttttcatttatgaaattagtctctgctctagtgtaatactcaatgttgagcagagactaatttcatagataaaattttttag-gggacca 980994  T
Q  98 aaaacataaggaatattttagagagactaaaattaaatgttggtgtatttaaaaggatcatttacatatttaacc 172  Q
    ||| | |||| |||||||||||| ||||||||| |||||||| | |||||||| ||||||||||| |||||||||    
T  980993 aaagcctaagaaatattttagag-gactaaaatcaaatgttgatatatttaaagggatcatttacttatttaacc 980920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 1 - 148
Target Start/End: Complemental strand, 12874855 - 12874705
Alignment:
Q  1 cctctaaaaattttcagcgatgaaattagtccctgctctggtgtaatgttcaatgtagagcagggac---tttcacatatgaaaatttttagagggacca 97  Q
    ||||||||| ||||||   |||||||||||||||||||| ||||||   |||||||||||||| |||   ||||| | |||||| ||||||||| |||||    
T  12874855 cctctaaaagttttcatttatgaaattagtccctgctctagtgtaagactcaatgtagagcagagactaatttcatagatgaaattttttagagagacca 12874756  T
Q  98 aaaacataaggaatattttagagagactaaaattaaatgttggtgtattta 148  Q
    |||   ||||| |||||||| || ||| ||||| |||||||||| ||||||    
T  12874755 aaagtctaagggatattttaaagggaccaaaatcaaatgttggtatattta 12874705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 76 - 148
Target Start/End: Complemental strand, 37897672 - 37897600
Alignment:
Q  76 atgaaaatttttagagggaccaaaaacataaggaatattttagagagactaaaattaaatgttggtgtattta 148  Q
    ||||||||||||||||||||| ||||| ||||||||||||||||| || |||||| |||||||||| ||||||    
T  37897672 atgaaaatttttagagggaccgaaaacctaaggaatattttagagggagtaaaatcaaatgttggtctattta 37897600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 76 - 175
Target Start/End: Original strand, 16192571 - 16192671
Alignment:
Q  76 atgaaaatttttagagggaccaaaaa-cataaggaatattttagagagactaaaattaaatgttggtgtatttaaaaggatcatttacatatttaaccct 174  Q
    |||||| ||||| ||| ||||||||| | ||||||||||||||| ||||||||||| |||||||| | ||||||| ||||  |||||| |||||||||||    
T  16192571 atgaaattttttggagagaccaaaaagcctaaggaatattttagggagactaaaatcaaatgttgatatatttaagaggactatttacttatttaaccct 16192670  T
Q  175 a 175  Q
    |    
T  16192671 a 16192671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 41 - 132
Target Start/End: Original strand, 25330675 - 25330769
Alignment:
Q  41 gtgtaatgttcaatgtagagcagggact---ttcacatatgaaaatttttagagggaccaaaaacataaggaatattttagagagactaaaatta 132  Q
    ||||||| ||||||||||||||||||||   |||| | ||||||||||||||| ||||||||||| |||  ||||||||| || |||||||||||    
T  25330675 gtgtaatattcaatgtagagcagggactaatttcataaatgaaaatttttagaaggaccaaaaacctaaaaaatattttaaagggactaaaatta 25330769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 104 - 176
Target Start/End: Complemental strand, 39786385 - 39786313
Alignment:
Q  104 taaggaatattttagagagactaaaattaaatgttggtgtatttaaaaggatcatttacatatttaaccctaa 176  Q
    ||||||| ||||||| ||||||||||| |||||||||| ||||||| ||||| |||||| |||||||||||||    
T  39786385 taaggaaaattttagcgagactaaaatcaaatgttggtatatttaataggattatttacttatttaaccctaa 39786313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 84 - 175
Target Start/End: Complemental strand, 18509586 - 18509495
Alignment:
Q  84 ttttagagggaccaaaaacataaggaatattttagagagactaaaattaaatgttggtgtatttaaaaggatcatttacatatttaacccta 175  Q
    |||| ||||||||||||||  |||||||||||||||| ||||||||| |||||||||| ||||||   ||| ||||||  ||||||||||||    
T  18509586 ttttggagggaccaaaaaccaaaggaatattttagagggactaaaatcaaatgttggtatatttagggggaccatttaattatttaacccta 18509495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 56 - 147
Target Start/End: Original strand, 12874816 - 12874910
Alignment:
Q  56 tagagcagggact---ttcacatatgaaaatttttagagggaccaaaaacataaggaatattttagagagactaaaattaaatgttggtgtattt 147  Q
    |||||||||||||   |||| | ||||||| ||||||||||||||||||| |||  |||||||||||| ||||||||| |||| ||||| |||||    
T  12874816 tagagcagggactaatttcataaatgaaaacttttagagggaccaaaaacctaaataatattttagagggactaaaatcaaatattggtatattt 12874910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 76 - 171
Target Start/End: Complemental strand, 16128015 - 16127920
Alignment:
Q  76 atgaaaatttttagagggaccaaaaacataaggaatattttagagagactaaaattaaatgttggtgtatttaaaaggatcatttacatatttaac 171  Q
    ||||||| ||||||||||||||||||| ||   ||||||||||   |||||||||||||||||||| |||||||  |||  |||||| ||||||||    
T  16128015 atgaaaaattttagagggaccaaaaacctacataatattttaggaggactaaaattaaatgttggtatatttaaggggactatttacttatttaac 16127920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 83 - 149
Target Start/End: Original strand, 27847998 - 27848064
Alignment:
Q  83 tttttagagggaccaaaaacataaggaatattttagagagactaaaattaaatgttggtgtatttaa 149  Q
    ||||| |||||||||||| | |||| ||||||||| |||||||||||| |||||||||| |||||||    
T  27847998 tttttggagggaccaaaagcttaagtaatattttaaagagactaaaatcaaatgttggtatatttaa 27848064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 169
Target Start/End: Original strand, 16127999 - 16128169
Alignment:
Q  1 cctctaaaaattttcagcgatgaaattagtccctgctctggtgtaatgttcaatgtagagcagggac---tttcacatatgaaaatttttagagggacca 97  Q
    ||||||||| ||||||   |||||||||||| || |||| ||||||  ||||||||||||||| |||   ||||| | ||||||| | ||||| | ||||    
T  16127999 cctctaaaatttttcatttatgaaattagtctcttctctagtgtaaaattcaatgtagagcagagactaatttcataaatgaaaaatgttagaagaacca 16128098  T
Q  98 aaaacataaggaatattttagagagactaaaattaaatgttggtgtatttaaaaggatcatttacatattta 169  Q
     |||| ||| |||||||||| || || |||||| |||| ||||| |||| |  |||||||||||| ||||||    
T  16128099 gaaacctaaagaatattttaaag-gattaaaatcaaattttggtatattcacgaggatcatttacttattta 16128169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 76 - 148
Target Start/End: Original strand, 981076 - 981147
Alignment:
Q  76 atgaaaatttttagagggaccaaaaacataaggaatattttagagagactaaaattaaatgttggtgtattta 148  Q
    ||||||| ||||||||||||||||| | ||| ||||||||||| | ||||||||| |||||||||| ||||||    
T  981076 atgaaaaattttagagggaccaaaagcctaaagaatattttag-gggactaaaatcaaatgttggtatattta 981147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 4921338 - 4921271
Alignment:
Q  1 cctctaaaaattttcagcgatgaaattagtccctgctctggtgtaatgttcaatgtagagcagggact 68  Q
    |||||||||||||||| | ||||||||||| ||| |||| |||||||  ||||||||||||| |||||    
T  4921338 cctctaaaaattttcatctatgaaattagttcctactctagtgtaatactcaatgtagagcatggact 4921271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 76 - 171
Target Start/End: Complemental strand, 40152795 - 40152701
Alignment:
Q  76 atgaaaatttttagagggaccaaaaacataaggaatattttagagagactaaaattaaatgttggtgtatttaaaaggatcatttacatatttaac 171  Q
    ||||||| |||| ||||||| |||||  |||||||||||||||   ||||||||| ||||||| || ||||| |||||| ||||||| ||||||||    
T  40152795 atgaaaaattttggagggacaaaaaatctaaggaatattttaggaggactaaaataaaatgtttgtatattt-aaaggaccatttacttatttaac 40152701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 84 - 173
Target Start/End: Original strand, 20972389 - 20972478
Alignment:
Q  84 ttttagagggaccaaaaacataaggaatattttagagagactaaaattaaatgttggtgtatttaaaaggatcatttacatatttaaccc 173  Q
    |||||| |||||||||||| |||| ||||||||   | ||||||||| |||||||| | |||||||| ||| |||| || ||||||||||    
T  20972389 ttttagcgggaccaaaaacctaagaaatattttttggggactaaaatcaaatgttgatatatttaaagggaccattcacttatttaaccc 20972478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 84 - 148
Target Start/End: Complemental strand, 27847946 - 27847882
Alignment:
Q  84 ttttagagggaccaaaaacataaggaatattttagagagactaaaattaaatgttggtgtattta 148  Q
    ||||| ||||||||||||| ||||||||||||||    ||||||||| |||||||||| ||||||    
T  27847946 ttttaaagggaccaaaaacttaaggaatattttaagtggactaaaatcaaatgttggtatattta 27847882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 50 - 175
Target Start/End: Complemental strand, 7328459 - 7328331
Alignment:
Q  50 tcaatgtagagcagggact---ttcacatatgaaaatttttagagggaccaaaaacata-aggaatattttagagagactaaaattaaatgttggtgtat 145  Q
    |||||||||| ||||||||   |||| | ||||||| |||||||||||| |||||| || |  |||||||| ||| |||| |||| ||||| |||| |||    
T  7328459 tcaatgtagaacagggactaatttcataaatgaaaaattttagagggactaaaaacctacaaaaatattttggagggactgaaatcaaatgatggtatat 7328360  T
Q  146 ttaaaaggatcatttacatatttaacccta 175  Q
    || | |||||| ||||| ||||||||||||    
T  7328359 tt-ataggatcgtttacttatttaacccta 7328331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 20 - 148
Target Start/End: Original strand, 35926824 - 35926955
Alignment:
Q  20 atgaaattagtccctgctctggtgtaatgttcaatgtagagcagggact---ttcacatatgaaaatttttagagggaccaaaaacataaggaatatttt 116  Q
    |||||||||||| || |||| || |||| ||| ||||||||||  ||||   |||| | || |||| ||||||||  | ||||||| |||  ||||||||    
T  35926824 atgaaattagtctctactctagtataatattcgatgtagagcaaagactaatttcataaataaaaaattttagagaaatcaaaaacctaaaaaatatttt 35926923  T
Q  117 agagagactaaaattaaatgttggtgtattta 148  Q
    |  ||||||||||| |||||||||| ||||||    
T  35926924 attgagactaaaatcaaatgttggtatattta 35926955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 84 - 148
Target Start/End: Complemental strand, 35926813 - 35926749
Alignment:
Q  84 ttttagagggaccaaaaacataaggaatattttagagagactaaaattaaatgttggtgtattta 148  Q
    ||||||||| || |||||| |||  |||||||||  ||||||||||| |||||||||| ||||||    
T  35926813 ttttagaggaactaaaaacctaaaaaatattttatggagactaaaatcaaatgttggtatattta 35926749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 41 - 116
Target Start/End: Original strand, 39159216 - 39159294
Alignment:
Q  41 gtgtaatgttcaatgtagagcagggact---ttcacatatgaaaatttttagagggaccaaaaacataaggaatatttt 116  Q
    ||||||| ||||||||||||||||||||   ||||   |||||| ||||| |||||||||||| | ||| |||||||||    
T  39159216 gtgtaatattcaatgtagagcagggactaatttcatggatgaaattttttggagggaccaaaatcctaaagaatatttt 39159294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 55; Significance: 1e-22; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 76 - 174
Target Start/End: Original strand, 8896026 - 8896124
Alignment:
Q  76 atgaaaatttttagagggaccaaaaacataaggaatattttagagagactaaaattaaatgttggtgtatttaaaaggatcatttacatatttaaccct 174  Q
    |||||| |||||| || |||||||| | ||| ||||||||||| |||||||||||||||||||||||||||||| | ||||| |||| |||||||||||    
T  8896026 atgaaattttttaaagagaccaaaagcttaaagaatattttagggagactaaaattaaatgttggtgtatttaagatgatcacttacttatttaaccct 8896124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 20 - 176
Target Start/End: Complemental strand, 4304299 - 4304140
Alignment:
Q  20 atgaaattagtccctgctctggtgtaatgttcaatgtagagcagggact---ttcacatatgaaaatttttagagggaccaaaaacataaggaatatttt 116  Q
    |||||||||||| ||||||| |||||||  ||||||||||||| |||||   |||| ||||| ||| ||||||| ||||||||| | |||| ||||||||    
T  4304299 atgaaattagtctctgctctagtgtaatactcaatgtagagcatggactaatttcatatatgtaaaattttagaaggaccaaaagcttaagaaatatttt 4304200  T
Q  117 agagagactaaaattaaatgttggtgtatttaaaaggatcatttacatatttaaccctaa 176  Q
    ||   ||||||||| |||||||||| |||||||  |||  |||||  |||||||||||||    
T  4304199 aggaggactaaaatcaaatgttggtatatttaaggggacgatttatttatttaaccctaa 4304140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 84 - 172
Target Start/End: Complemental strand, 30430359 - 30430271
Alignment:
Q  84 ttttagagggaccaaaaacataaggaatattttagagagactaaaattaaatgttggtgtatttaaaaggatcatttacatatttaacc 172  Q
    ||||||||||||||||| | ||| |||||||||||||  |||||||| |||||||||| |||||| | ||| ||||||| |||||||||    
T  30430359 ttttagagggaccaaaagcctaaagaatattttagaggaactaaaatcaaatgttggtatatttagagggaccatttacttatttaacc 30430271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 84 - 171
Target Start/End: Complemental strand, 2928183 - 2928096
Alignment:
Q  84 ttttagagggaccaaaaacataaggaatattttagagagactaaaattaaatgttggtgtatttaaaaggatcatttacatatttaac 171  Q
    |||| |||||||||||| | ||||||| ||||||||| ||||| ||| |||||||||| ||||||  |||| ||||||| ||||||||    
T  2928183 ttttggagggaccaaaagcctaaggaaaattttagagggactagaatcaaatgttggtatatttaggaggaccatttacttatttaac 2928096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 76 - 175
Target Start/End: Original strand, 6931099 - 6931198
Alignment:
Q  76 atgaaaatttttagagggaccaaaaacataaggaatattttagagagactaaaattaaatgttggtgtatttaaaaggatcatttacatatttaacccta 175  Q
    ||||||| |||||||| || ||||||| |||| ||| ||||| || ||||||||| ||||||| || ||||||| ||||  |||||| ||||||||||||    
T  6931099 atgaaaaattttagagagatcaaaaacctaagaaatgttttaaagggactaaaatcaaatgttagtatatttaagaggactatttacttatttaacccta 6931198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 76 - 141
Target Start/End: Original strand, 28725670 - 28725734
Alignment:
Q  76 atgaaaatttttagagggaccaaaaacataaggaatattttagagagactaaaattaaatgttggt 141  Q
    |||||| ||||| |||||||||||||| ||| ||||||||| | ||||||||||| ||||||||||    
T  28725670 atgaaattttttggagggaccaaaaacctaatgaatatttt-gggagactaaaatcaaatgttggt 28725734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 83 - 174
Target Start/End: Original strand, 4304310 - 4304404
Alignment:
Q  83 tttttagagggacc---aaaaacataaggaatattttagagagactaaaattaaatgttggtgtatttaaaaggatcatttacatatttaaccct 174  Q
    ||||||||||||||   |||||  ||| ||||||||||||| ||||||||| |||||||||| ||||||    ||| |||||| |||||||||||    
T  4304310 tttttagagggaccgccaaaaatctaatgaatattttagagggactaaaatcaaatgttggtatatttagggagattatttacttatttaaccct 4304404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 108 - 148
Target Start/End: Original strand, 25799513 - 25799553
Alignment:
Q  108 gaatattttagagagactaaaattaaatgttggtgtattta 148  Q
    |||||||||| ||||||||||||||||||||||| ||||||    
T  25799513 gaatattttaaagagactaaaattaaatgttggtatattta 25799553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 139
Target Start/End: Complemental strand, 10822005 - 10821864
Alignment:
Q  1 cctctaaaaattttcagcgatgaaattagtccctgctctggtgtaatgttcaatgtagagcagggact---ttcacatatgaaaatttttagagggacca 97  Q
    ||||||||| ||||||   |||||||||||| || || | ||||||| | |||||||| | || ||||   |||| | |||||| |||||||||||||||    
T  10822005 cctctaaaatttttcatatatgaaattagtctctactgtagtgtaatatccaatgtagggaagcgactaatttcatagatgaaattttttagagggacca 10821906  T
Q  98 aaaacataaggaatattttagagagactaaaattaaatgttg 139  Q
    ||| | |||  |||||||||  | ||||||||| ||||||||    
T  10821905 aaagcctaaaaaatattttacggtgactaaaataaaatgttg 10821864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 105 - 184
Target Start/End: Complemental strand, 46835708 - 46835629
Alignment:
Q  105 aaggaatattttagagagactaaaattaaatgttggtgtatttaaaaggatcatttacatatttaaccctaattcttttc 184  Q
    |||||| |||||||||||| |||||  ||| |||||| |||||| ||||||||   ||||||||||||||| || |||||    
T  46835708 aaggaaaattttagagagattaaaacaaaaagttggtatatttataaggatcaaaaacatatttaaccctattttttttc 46835629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 76 - 174
Target Start/End: Original strand, 32618945 - 32619043
Alignment:
Q  76 atgaaaatttttagagggaccaaaaacataaggaatattttagagagactaaaattaaatgttggtgtatttaaaaggatcatttacatatttaaccct 174  Q
    ||||||| ||||||||| || |||||  |||  ||||||||||| |||||||||| |||||||| | |||||| | | |  |||||| |||||||||||    
T  32618945 atgaaaaattttagaggaactaaaaatctaaaaaatattttagaaagactaaaatcaaatgttgatatatttagatgaactatttacttatttaaccct 32619043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 84 - 138
Target Start/End: Complemental strand, 45404886 - 45404832
Alignment:
Q  84 ttttagagggaccaaaaacataaggaatattttagagagactaaaattaaatgtt 138  Q
    |||| ||||||||| |||  ||||||||||||||| ||||||||||| |||||||    
T  45404886 ttttggagggaccagaaatctaaggaatattttagggagactaaaatcaaatgtt 45404832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 94 - 175
Target Start/End: Complemental strand, 30172150 - 30172069
Alignment:
Q  94 accaaaaacataaggaatattttagagagactaaaattaaatgttggtgtatttaaaaggatcatttacatatttaacccta 175  Q
    ||||||||| ||| ||||||||||  | ||||||||| |||||||| | ||||||   ||| ||||||| ||||||||||||    
T  30172150 accaaaaacctaaagaatattttaaggggactaaaatcaaatgttgatatatttagggggaccatttacttatttaacccta 30172069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 105 - 174
Target Start/End: Complemental strand, 43862596 - 43862527
Alignment:
Q  105 aaggaatattttagagagactaaaattaaatgttggtgtatttaaaaggatcatttacatatttaaccct 174  Q
    |||||| ||||||||| ||||||||| ||| |||||| |||||| ||||| ||   ||||||||||||||    
T  43862596 aaggaaaattttagagggactaaaatgaaaagttggtatatttataaggaccaaaaacatatttaaccct 43862527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 108 - 148
Target Start/End: Complemental strand, 27614079 - 27614039
Alignment:
Q  108 gaatattttagagagactaaaattaaatgttggtgtattta 148  Q
    ||||||||||  |||||||||||||||||||||| ||||||    
T  27614079 gaatattttatggagactaaaattaaatgttggtatattta 27614039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 53; Significance: 2e-21; HSPs: 19)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 20 - 175
Target Start/End: Original strand, 31172275 - 31172433
Alignment:
Q  20 atgaaattagtccctgctctggtgtaatgttcaatgtagagcagggact---ttcacatatgaaaatttttagagggaccaaaaacataaggaatatttt 116  Q
    |||||||||||| ||||||| |||||||  ||||||||||||| || ||   ||   | ||||||||||||||||||||||||||| |||  ||||||||    
T  31172275 atgaaattagtctctgctctagtgtaatactcaatgtagagcaaggtctaattttctagatgaaaatttttagagggaccaaaaacctaaaaaatatttt 31172374  T
Q  117 agagagactaaaattaaatgttggtgtatttaaaaggatcatttacatatttaacccta 175  Q
    ||   || |||||| ||||||| || |||||||| ||||||||||| ||||||| ||||    
T  31172375 aggaggattaaaatcaaatgtttgtatatttaaagggatcatttacttatttaatccta 31172433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 1 - 173
Target Start/End: Original strand, 31198379 - 31198553
Alignment:
Q  1 cctctaaaaattttcagcgatgaaattagtccctgctctggtgtaatgttcaatgtagagcagggac---tttcacatatgaaaatttttagagggacca 97  Q
    ||||||||| ||||||   ||||||||| ||||||||||  ||||||  ||||| ||||||||||||   ||||| | ||||||| |||||||||| |||    
T  31198379 cctctaaaatttttcatttatgaaattaatccctgctctaatgtaatactcaatatagagcagggactaatttcatagatgaaaaattttagaggg-cca 31198477  T
Q  98 aaaacataaggaatatttta-gagagactaaaattaaatgttggtgtatttaaaaggatcatttacatatttaaccc 173  Q
    ||| | |||| ||||||||| |||| |||||||| |||||||||| |||||||| |||  |||||| ||||||||||    
T  31198478 aaagcctaagaaatattttaggaga-actaaaatcaaatgttggtatatttaaagggactatttacttatttaaccc 31198553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 7 - 175
Target Start/End: Complemental strand, 19105424 - 19105254
Alignment:
Q  7 aaaattttcagcgatgaaattagtccctgctctggtgtaatgttcaatgtagagcagggact---ttcacatatgaaaatttttagagggaccaaaaaca 103  Q
    ||||||||||   ||||||||||||  |||||| |||||||  |||||||||||||  ||||   |||| | ||||||| || |||||||||||||| |     
T  19105424 aaaattttcatttatgaaattagtctatgctctagtgtaatactcaatgtagagcattgactaatttcataaatgaaaaattatagagggaccaaaagcc 19105325  T
Q  104 taaggaatattttagagagactaaaattaaatgttggtgtatttaaaaggatcatttacatatttaacccta 175  Q
    ||| ||||||||||||| |||||||||  |||||| || ||||||   ||||| ||||| ||||||||||||    
T  19105324 taaagaatattttagag-gactaaaatcgaatgttagtatatttatgcggatcttttacttatttaacccta 19105254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 3 - 172
Target Start/End: Original strand, 9686376 - 9686540
Alignment:
Q  3 tctaaaaattttcagcgatgaaattagtccctgctctggtgtaatgttcaatgtagagcagggactttcacatatgaaaatttttagagggaccaaaaac 102  Q
    ||||||| ||||||   |||||||||||| ||||||| |||||||  |||||||||||||||||||     | ||||||| ||||||| ||||||||| |    
T  9686376 tctaaaatttttcatttatgaaattagtctctgctctagtgtaatactcaatgtagagcagggact-----aaatgaaaaattttagaaggaccaaaagc 9686470  T
Q  103 ataaggaatattttagagagactaaaattaaatgttggtgtatttaaaaggatcatttacatatttaacc 172  Q
     |||  |||||||||  | ||||||||| |||| ||| | ||||||  ||||  |||||| |||||||||    
T  9686471 ctaaataatattttatggggactaaaatcaaatattgatatatttaggaggactatttacttatttaacc 9686540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 76 - 148
Target Start/End: Original strand, 7760756 - 7760828
Alignment:
Q  76 atgaaaatttttagagggaccaaaaacataaggaatattttagagagactaaaattaaatgttggtgtattta 148  Q
    |||||||||||| |||||||||||| | |||| ||||||||| || ||||||||| |||||||||| ||||||    
T  7760756 atgaaaatttttggagggaccaaaagcctaagaaatattttatagggactaaaatcaaatgttggtatattta 7760828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 76 - 172
Target Start/End: Complemental strand, 20164716 - 20164620
Alignment:
Q  76 atgaaaatttttagagggaccaaaaacataaggaatattttagagagactaaaattaaatgttggtgtatttaaaaggatcatttacatatttaacc 172  Q
    ||||||| |||| |||||||||||||| ||||||| |||||| |  ||||||||| |||||||||| ||||| |  ||| ||||||| |||||||||    
T  20164716 atgaaaaattttggagggaccaaaaacttaaggaaaattttaaaatgactaaaatcaaatgttggtatattttaggggaccatttacttatttaacc 20164620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 84 - 174
Target Start/End: Complemental strand, 7760697 - 7760607
Alignment:
Q  84 ttttagagggaccaaaaacataaggaatattttagagagactaaaattaaatgttggtgtatttaaaaggatcatttacatatttaaccct 174  Q
    |||| |||||||||||| | ||| ||||||||||| | ||||||||| | ||| |||| |||||| |||||| |||||| |||||||||||    
T  7760697 ttttggagggaccaaaagcctaaagaatattttagggggactaaaatcatatgctggtatatttagaaggattatttacttatttaaccct 7760607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 75 - 173
Target Start/End: Complemental strand, 29635332 - 29635235
Alignment:
Q  75 tatgaaaatttttagagggaccaaaaacataaggaatattttagagagactaaaattaaatgttggtgtatttaaaaggatcatttacatatttaaccc 173  Q
    |||||||| |||||||||||||||||   ||||||||||||||| | ||||||||| |||||||| | ||||||   ||| ||||||| ||||||||||    
T  29635332 tatgaaaaattttagagggaccaaaagtctaaggaatattttag-gggactaaaatcaaatgttgatatatttagggggaccatttacttatttaaccc 29635235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 87 - 148
Target Start/End: Original strand, 20165011 - 20165072
Alignment:
Q  87 tagagggaccaaaaacataaggaatattttagagagactaaaattaaatgttggtgtattta 148  Q
    |||||||| ||||||| ||| ||||||||||||| ||||||||| |||||||||| ||||||    
T  20165011 tagagggatcaaaaacctaatgaatattttagagggactaaaatcaaatgttggtatattta 20165072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 79 - 148
Target Start/End: Original strand, 23797206 - 23797275
Alignment:
Q  79 aaaatttttagagggaccaaaaacataaggaatattttagagagactaaaattaaatgttggtgtattta 148  Q
    |||| ||||||||||||||||||  |||| |||||||||||| ||||||||| |||||||| | ||||||    
T  23797206 aaaagttttagagggaccaaaaatctaagaaatattttagagggactaaaatcaaatgttgatatattta 23797275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 20 - 173
Target Start/End: Complemental strand, 8130034 - 8129879
Alignment:
Q  20 atgaaattagtccctgctctggtgtaatgttcaatgtagagcagggac---tttcacatatgaaaatttttagagggaccaaaaacataaggaatatttt 116  Q
    ||||||||||||  |||||| ||||||| ||||||||||||||| |||   ||||| | ||||||  ||||||||| |||||||    ||| ||||||||    
T  8130034 atgaaattagtcattgctctagtgtaatattcaatgtagagcagagacgaatttcataaatgaaagattttagaggaaccaaaagtcaaagaaatatttt 8129935  T
Q  117 agagagactaaaattaaatgttggtgtatttaaaaggatcatttacatatttaaccc 173  Q
    | |  || |||||| ||||||||||  |||||  | |||||||||| ||||||||||    
T  8129934 aaaaggattaaaatcaaatgttggtagatttagga-gatcatttacttatttaaccc 8129879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 76 - 176
Target Start/End: Complemental strand, 15329955 - 15329854
Alignment:
Q  76 atgaaaatttttagagggaccaaaaacat-aaggaatattttagagagactaaaattaaatgttggtgtatttaaaaggatcatttacatatttaaccct 174  Q
    |||||||||||| || ||||||||||| | ||| ||||| || | | ||||||||| |||||||||| |||||||  |||  |||| |||||||||||||    
T  15329955 atgaaaatttttggatggaccaaaaaccttaagtaatatctttgggggactaaaatcaaatgttggtatatttaaggggactatttccatatttaaccct 15329856  T
Q  175 aa 176  Q
    ||    
T  15329855 aa 15329854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 76 - 148
Target Start/End: Complemental strand, 31198395 - 31198323
Alignment:
Q  76 atgaaaatttttagagggaccaaaaacataaggaatattttagagagactaaaattaaatgttggtgtattta 148  Q
    ||||||| ||||||||||| ||| ||| |||  |||||||||||  ||||||||| |||||||||| ||||||    
T  31198395 atgaaaaattttagagggatcaataacctaaaaaatattttagaaggactaaaatcaaatgttggtatattta 31198323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 84 - 148
Target Start/End: Original strand, 37081261 - 37081325
Alignment:
Q  84 ttttagagggaccaaaaacataaggaatattttagagagactaaaattaaatgttggtgtattta 148  Q
    ||||||||||||||||||| ||||||||||||| | | ||||||||| ||| |||| | ||||||    
T  37081261 ttttagagggaccaaaaacctaaggaatatttttgggggactaaaatcaaacgttgatatattta 37081325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 89 - 176
Target Start/End: Complemental strand, 3555448 - 3555362
Alignment:
Q  89 gagggaccaaaaacataaggaatattttagagagactaaaattaaatgttggtgtatttaaaaggatcatttacatatttaaccctaa 176  Q
    |||||||||||| | |||| |||||||||| | ||||||||| |||||||||| ||||||   ||| ||||| | |||||||||||||    
T  3555448 gagggaccaaaacc-taagaaatattttagggggactaaaatcaaatgttggtatatttagggggaccatttgcttatttaaccctaa 3555362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 84 - 178
Target Start/End: Original strand, 19105421 - 19105515
Alignment:
Q  84 ttttagagggaccaaaaacataaggaatattttagagagactaaaattaaatgttggtgtatttaaaaggatcatttacatatttaaccctaatt 178  Q
    ||||||||||||||||| | ||| ||||| ||||  | ||||||||| ||| |||||| ||||||   |||  |||||| |||||||||||||||    
T  19105421 ttttagagggaccaaaagcctaaagaatagtttaaggggactaaaatcaaaagttggtatatttagggggactatttacttatttaaccctaatt 19105515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 20 - 176
Target Start/End: Complemental strand, 21657453 - 21657294
Alignment:
Q  20 atgaaattagtccctgctctggtgtaatgttcaatgtagagcagggact---ttcacatatgaaaatttttagagggaccaaaaacataaggaatatttt 116  Q
    ||||||||||| || | |||  ||||||  |||||||||||||| ||||   |||| | |||||||||||| || | |||||||   ||| |||||||||    
T  21657453 atgaaattagtgcccgttctaatgtaatactcaatgtagagcagagactaatttcataaatgaaaattttttgaagaaccaaaagtctaaagaatatttt 21657354  T
Q  117 agagaga-ctaaaattaaatgttggtgtatttaaaaggatcatttacatatttaaccctaa 176  Q
    | || || ||||| |||||||||| | ||||||  |||| ||||||| |||||||||||||    
T  21657353 a-agggagctaaagttaaatgttgatatatttaggaggaccatttacttatttaaccctaa 21657294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 82 - 176
Target Start/End: Complemental strand, 35054536 - 35054442
Alignment:
Q  82 atttttagagggaccaaaaacataaggaatattttagagagactaaaattaaatgttggtgtatttaaaaggatcatttacatatttaaccctaa 176  Q
    ||||||||||| |||||||   ||| |||||||||| || ||  ||||||||||||| || |||||| ||| |  |||||| |||||||||||||    
T  35054536 atttttagaggaaccaaaagtctaaagaatattttaaagggatcaaaattaaatgttagtatatttagaagaactatttacttatttaaccctaa 35054442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 105 - 173
Target Start/End: Original strand, 43725998 - 43726066
Alignment:
Q  105 aaggaatattttagagagactaaaattaaatgttggtgtatttaaaaggatcatttacatatttaaccc 173  Q
    |||||| ||||||||||||||||||  ||| |||||| |||||| |||||| |   |||||||||||||    
T  43725998 aaggaaaattttagagagactaaaacgaaaagttggtatatttataaggattaaaaacatatttaaccc 43726066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 52; Significance: 8e-21; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 1 - 171
Target Start/End: Complemental strand, 13340618 - 13340445
Alignment:
Q  1 cctctaaaaattttcagcgatgaaattagtccctgctctggtgtaatgttcaatgtagagcagggac---tttcacatatgaaaatttttagagggacca 97  Q
    |||||||||| |||||   |||||||||||||||||||| |||||||  ||||||||||||||| ||   ||||  |  |||||| |||| |||||||||    
T  13340618 cctctaaaaaatttcatttatgaaattagtccctgctctagtgtaatactcaatgtagagcaggaactaatttcttaattgaaaaattttggagggacca 13340519  T
Q  98 aaaacataaggaatattttagagagactaaaattaaatgttggtgtatttaaaaggatcatttacatatttaac 171  Q
    ||| | ||| |||| ||||| || ||||||||| |||||||||| |||||||  |||  |||||| ||||||||    
T  13340518 aaagcctaaagaatgttttatagggactaaaatcaaatgttggtatatttaaggggactatttacttatttaac 13340445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 84 - 175
Target Start/End: Complemental strand, 31298813 - 31298722
Alignment:
Q  84 ttttagagggaccaaaaacataaggaatattttagagagactaaaattaaatgttggtgtatttaaaaggatcatttacatatttaacccta 175  Q
    ||||||||||||||||| | |||| |||||||||||| || ||||||||||||||||| | ||||||  |||||||||| ||||||||||||    
T  31298813 ttttagagggaccaaaagcctaagaaatattttagagggattaaaattaaatgttggtatttttaaagagatcatttacttatttaacccta 31298722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 56 - 176
Target Start/End: Original strand, 13340579 - 13340702
Alignment:
Q  56 tagagcagggact---ttcacatatgaaaatttttagagggaccaaaaacataaggaatattttagagagactaaaattaaatgttggtgtatttaaaag 152  Q
    |||||||||||||   |||| | |||||| |||||||||||||||||||| ||| ||||||||||  | ||||||||| ||||||| || |||||||  |    
T  13340579 tagagcagggactaatttcataaatgaaattttttagagggaccaaaaacctaaagaatattttatggggactaaaatcaaatgttagtatatttaaggg 13340678  T
Q  153 gatcatttacatatttaaccctaa 176  Q
    ||  |||| |||||||||||||||    
T  13340679 gactattttcatatttaaccctaa 13340702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 76 - 173
Target Start/End: Complemental strand, 30519777 - 30519681
Alignment:
Q  76 atgaaaatttttagagggaccaaaaacataaggaatattttagagagactaaaattaaatgttggtgtatttaaaaggatcatttacatatttaaccc 173  Q
    ||||||| ||||||||||||||||||| |||  ||||||||| ||||| |||||| |||||||||| ||||| | | || ||||||| ||||||||||    
T  30519777 atgaaaaattttagagggaccaaaaacttaaataatattttaaagagattaaaatcaaatgttggtatattt-agacgaccatttacttatttaaccc 30519681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 76 - 175
Target Start/End: Original strand, 31298883 - 31298982
Alignment:
Q  76 atgaaaatttttagagggaccaaaaacataaggaatattttagagagactaaaattaaatgttggtgtatttaaaaggatcatttacatatttaacccta 175  Q
    |||||||  |||||||||| ||||| | ||| |||||||||||||  |||||||| |||| ||||| |||||||| |||  |||||| ||||||||||||    
T  31298883 atgaaaaaatttagagggagcaaaagcctaaagaatattttagaggaactaaaatcaaatattggtatatttaaagggactatttacttatttaacccta 31298982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 84 - 148
Target Start/End: Complemental strand, 24704396 - 24704332
Alignment:
Q  84 ttttagagggaccaaaaacataaggaatattttagagagactaaaattaaatgttggtgtattta 148  Q
    ||||||||||||||||| |||||  |||||||||| ||||||||||| |||| ||||| ||||||    
T  24704396 ttttagagggaccaaaagcataaataatattttagggagactaaaatcaaatattggtatattta 24704332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 83 - 176
Target Start/End: Original strand, 12290135 - 12290227
Alignment:
Q  83 tttttagagggaccaaaaacataaggaatattttagagagactaaaattaaatgttggtgtatttaaaaggatcatttacatatttaaccctaa 176  Q
    |||||| ||||||||||| |  ||| | | ||||||||  ||||||||||||||||||| ||||| |  ||||||||||| |||||||||||||    
T  12290135 tttttaaagggaccaaaagcgaaagaattgttttagaggaactaaaattaaatgttggtatattt-aggggatcatttacttatttaaccctaa 12290227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 76 - 148
Target Start/End: Complemental strand, 12290077 - 12290005
Alignment:
Q  76 atgaaaatttttagagggaccaaaaacataaggaatattttagagagactaaaattaaatgttggtgtattta 148  Q
    ||||||||||||  ||||| ||||||| || ||||||||||||  || ||||||| |||||||||| ||||||    
T  12290077 atgaaaatttttgaagggatcaaaaacctagggaatattttaggcaggctaaaatcaaatgttggtatattta 12290005  T

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Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 88 - 176
Target Start/End: Original strand, 33599847 - 33599935
Alignment:
Q  88 agagggaccaaaaacataaggaatattttagagagactaaaattaaatgttggtgtatttaaaaggatcatttacatatttaaccctaa 176  Q
    |||||||||||||    |||||| ||||||||||||||||||  ||| |||||| |||||| | ||||||   ||||||||||||||||    
T  33599847 agagggaccaaaagttgaaggaaaattttagagagactaaaacgaaaagttggtatatttatagggatcaaaaacatatttaaccctaa 33599935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 76 - 148
Target Start/End: Original strand, 34637583 - 34637655
Alignment:
Q  76 atgaaaatttttagagggaccaaaaacataaggaatattttagagagactaaaattaaatgttggtgtattta 148  Q
    ||||||| ||||||||||||||||||| | | ||||||||||| |  |||||||| |||||||| | ||||||    
T  34637583 atgaaaaattttagagggaccaaaaacctcaagaatattttaggggaactaaaatcaaatgttgatatattta 34637655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 76 - 162
Target Start/End: Original strand, 10284361 - 10284447
Alignment:
Q  76 atgaaaatttttagagggaccaaaaacataaggaatattttagagagactaaaattaaatgttggtgtatttaaaaggatcatttac 162  Q
    ||||||||| ||||| ||||||| ||| ||  ||||||||||  |||| |||||| |||||||  |||||||||  |||||||||||    
T  10284361 atgaaaattcttagaaggaccaacaacctatagaatattttaaggagattaaaatcaaatgttactgtatttaaggggatcatttac 10284447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 76 - 141
Target Start/End: Original strand, 19045049 - 19045114
Alignment:
Q  76 atgaaaatttttagagggaccaaaaacataaggaatattttagagagactaaaattaaatgttggt 141  Q
    |||||| ||||| |||| | | |||||||||| |||||||||||  ||||||||| ||||||||||    
T  19045049 atgaaatttttttgaggtatcgaaaacataagaaatattttagaaggactaaaatcaaatgttggt 19045114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 47; Significance: 7e-18; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 76 - 178
Target Start/End: Original strand, 22679485 - 22679587
Alignment:
Q  76 atgaaaatttttagagggaccaaaaacataaggaatattttagagagactaaaattaaatgttggtgtatttaaaaggatcatttacatatttaacccta 175  Q
    |||||||  |||||||||||||||||| |||  |||||||||||| ||||||||| |||||||||| ||||||   ||||| ||||| |||||||| |||    
T  22679485 atgaaaaaatttagagggaccaaaaacctaacaaatattttagagggactaaaatcaaatgttggtatatttagggggatcgtttacttatttaactcta 22679584  T
Q  176 att 178  Q
    |||    
T  22679585 att 22679587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 76 - 178
Target Start/End: Original strand, 30749099 - 30749201
Alignment:
Q  76 atgaaaatttttagagggaccaaaaacataaggaatattttagagagactaaaattaaatgttggtgtatttaaaaggatcatttacatatttaacccta 175  Q
    ||||||| ||||||||| |||||||||||||  ||||||||||||  | |||||| |||||||| | ||||||  ||||| |||||| ||||||||||||    
T  30749099 atgaaaaattttagaggaaccaaaaacataaaaaatattttagaggaattaaaatcaaatgttgatatatttaggaggattatttacgtatttaacccta 30749198  T
Q  176 att 178  Q
    |||    
T  30749199 att 30749201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 76 - 178
Target Start/End: Original strand, 30770550 - 30770652
Alignment:
Q  76 atgaaaatttttagagggaccaaaaacataaggaatattttagagagactaaaattaaatgttggtgtatttaaaaggatcatttacatatttaacccta 175  Q
    ||||||| ||||||||| |||||||||||||  ||||||||||||  | |||||| |||||||| | ||||||  ||||| |||||| ||||||||||||    
T  30770550 atgaaaaattttagaggaaccaaaaacataaaaaatattttagaggaattaaaatcaaatgttgatatatttaggaggattatttacgtatttaacccta 30770649  T
Q  176 att 178  Q
    |||    
T  30770650 att 30770652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 20 - 120
Target Start/End: Original strand, 51941968 - 51942071
Alignment:
Q  20 atgaaattagtccctgctctggtgtaatgttcaatgtagagcaggg---actttcacatatgaaaatttttagagggaccaaaaacataaggaatatttt 116  Q
    ||||||||||||||| |||| |||||||  ||||||||||||||||   | ||||| | ||||||| ||||||||| ||||||||| |||| ||||||||    
T  51941968 atgaaattagtccctcctctagtgtaatactcaatgtagagcagggattaatttcatagatgaaaaattttagaggaaccaaaaacctaagaaatatttt 51942067  T
Q  117 agag 120  Q
    ||||    
T  51942068 agag 51942071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 84 - 175
Target Start/End: Original strand, 16706502 - 16706596
Alignment:
Q  84 ttttagagggaccaaaaacataaggaatattttagagagactaaaattaaatgttggtg---tatttaaaaggatcatttacatatttaacccta 175  Q
    ||||||||||||||||||| ||| ||||||||||| | ||||||||| |||||||||||   ||||||   |||  |||||||||||||||||||    
T  16706502 ttttagagggaccaaaaacctaaagaatattttagggggactaaaatcaaatgttggtggtatatttagggggactatttacatatttaacccta 16706596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 76 - 175
Target Start/End: Original strand, 14760033 - 14760131
Alignment:
Q  76 atgaaaatttttagagggaccaaaaacataaggaatattttagagagactaaaattaaatgttggtgtatttaaaaggatcatttacatatttaacccta 175  Q
    ||||||| |||||| |||||||||| | |||  |||||||||| | || |||||| |||||||||| |||||||  ||||||||||| ||||||||||||    
T  14760033 atgaaaaattttag-gggaccaaaagcctaaaaaatattttagggggattaaaatcaaatgttggtatatttaaggggatcatttacttatttaacccta 14760131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 50 - 148
Target Start/End: Complemental strand, 13765682 - 13765581
Alignment:
Q  50 tcaatgtagagcagggact---ttcacatatgaaaatttttagagggaccaaaaacataaggaatattttagagagactaaaattaaatgttggtgtatt 146  Q
    ||||||||||| |||||||   |||| | ||||||| | ||| ||||||||||||| ||| ||||||||||  | ||||||||| |||||||||| ||||    
T  13765682 tcaatgtagagtagggactaatttcataaatgaaaaatattaaagggaccaaaaacctaaagaatattttatggggactaaaatcaaatgttggtatatt 13765583  T
Q  147 ta 148  Q
    ||    
T  13765582 ta 13765581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 76 - 178
Target Start/End: Original strand, 30746920 - 30747021
Alignment:
Q  76 atgaaaatttttagagggaccaaaaacataaggaatattttagagagactaaaattaaatgttggtgtatttaaaaggatcatttacatatttaacccta 175  Q
    ||||||||||||| ||  | ||||||  |||||||||||||  || ||||||||| |||||||||| ||||| | | ||| |||||| ||||||||||||    
T  30746920 atgaaaatttttaaagaaatcaaaaatctaaggaatattttgaagggactaaaatgaaatgttggtatattt-agatgattatttacttatttaacccta 30747018  T
Q  176 att 178  Q
    |||    
T  30747019 att 30747021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 76 - 178
Target Start/End: Original strand, 30768371 - 30768472
Alignment:
Q  76 atgaaaatttttagagggaccaaaaacataaggaatattttagagagactaaaattaaatgttggtgtatttaaaaggatcatttacatatttaacccta 175  Q
    ||||||||||||| ||  | ||||||  |||||||||||||  || ||||||||| |||||||||| ||||| | | ||| |||||| ||||||||||||    
T  30768371 atgaaaatttttaaagaaatcaaaaatctaaggaatattttgaagggactaaaatgaaatgttggtatattt-agatgattatttacttatttaacccta 30768469  T
Q  176 att 178  Q
    |||    
T  30768470 att 30768472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 84 - 174
Target Start/End: Complemental strand, 35294422 - 35294332
Alignment:
Q  84 ttttagagggaccaaaaacataaggaatattttagagagactaaaattaaatgttggtgtatttaaaaggatcatttacatatttaaccct 174  Q
    |||| |||||||||||| | | || |||||||| ||  ||||||||| |||||||| | |||||||| ||||||||||  |||||||||||    
T  35294422 ttttggagggaccaaaagcctcagaaatattttcgatggactaaaatcaaatgttgatatatttaaagggatcatttaattatttaaccct 35294332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 76 - 173
Target Start/End: Complemental strand, 30749048 - 30748951
Alignment:
Q  76 atgaaaatttttagagggaccaaaaacataaggaatattttagagagactaaaattaaatgttggtgtatttaaaaggatcatttacatatttaaccc 173  Q
    ||||||| ||||  ||||||||||| | ||| ||||||||||| | ||||||||| |||| || || ||||||  |||| ||||||| ||||||||||    
T  30749048 atgaaaaattttgaagggaccaaaagcctaaagaatattttagggggactaaaatcaaatatttgtatatttaggaggaccatttacttatttaaccc 30748951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 76 - 173
Target Start/End: Complemental strand, 30770499 - 30770402
Alignment:
Q  76 atgaaaatttttagagggaccaaaaacataaggaatattttagagagactaaaattaaatgttggtgtatttaaaaggatcatttacatatttaaccc 173  Q
    ||||||| ||||  ||||||||||| | ||| ||||||||||| | ||||||||| |||| || || ||||||  |||| ||||||| ||||||||||    
T  30770499 atgaaaaattttgaagggaccaaaagcctaaagaatattttagggggactaaaatcaaatatttgtatatttaggaggaccatttacttatttaaccc 30770402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 91 - 173
Target Start/End: Complemental strand, 15393227 - 15393145
Alignment:
Q  91 gggaccaaaaacataaggaatattttagagagactaaaattaaatgttggtgtatttaaaaggatcatttacatatttaaccc 173  Q
    |||||||||| | ||||||||||||||| | ||| |||||||||| ||||| |||||   ||||  |||||| ||||||||||    
T  15393227 gggaccaaaagcctaaggaatattttagggggacgaaaattaaatattggtatatttgtgaggactatttacttatttaaccc 15393145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 89 - 146
Target Start/End: Complemental strand, 20171472 - 20171415
Alignment:
Q  89 gagggaccaaaaacataaggaatattttagagagactaaaattaaatgttggtgtatt 146  Q
    ||||||||||||   |||| |||||||||||| ||||||||| |||||||||| ||||    
T  20171472 gagggaccaaaagtctaagaaatattttagagggactaaaatcaaatgttggtatatt 20171415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 112 - 173
Target Start/End: Complemental strand, 51680915 - 51680854
Alignment:
Q  112 attttagagagactaaaattaaatgttggtgtatttaaaaggatcatttacatatttaaccc 173  Q
    ||||||||| ||||||||| ||| |||||| |||||| ||||||||   |||||||||||||    
T  51680915 attttagagggactaaaatgaaaagttggtatatttataaggatcaaaaacatatttaaccc 51680854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 76 - 140
Target Start/End: Original strand, 8819351 - 8819414
Alignment:
Q  76 atgaaaatttttagagggaccaaaaacataaggaatattttagagagactaaaattaaatgttgg 140  Q
    ||||||| |||| ||||| |||||||| ||||||||||||||  || |||||||| |||||||||    
T  8819351 atgaaaaattttggaggg-ccaaaaacctaaggaatattttatggatactaaaatcaaatgttgg 8819414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0025 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 64000 - 63933
Alignment:
Q  1 cctctaaaaattttcagcgatgaaattagtccctgctctggtgtaatgttcaatgtagagcagggact 68  Q
    ||||| ||| |||||| | |||||||||||||||||||| |||||||  |||||||||||||||||||    
T  64000 cctctcaaatttttcatctatgaaattagtccctgctctagtgtaatactcaatgtagagcagggact 63933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0025; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 56 - 148
Target Start/End: Original strand, 63961 - 64056
Alignment:
Q  56 tagagcagggact---ttcacatatgaaaatttttagagggaccaaaaacataaggaatattttagagagactaaaattaaatgttggtgtattta 148  Q
    |||||||||||||   |||| | ||||||| ||| |||||||| |||||| |||  |||||||||| |  ||||||||||||||||||| ||||||    
T  63961 tagagcagggactaatttcatagatgaaaaatttgagagggactaaaaacctaaataatattttaggggaactaaaattaaatgttggtatattta 64056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0328 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0328
Description:

Target: scaffold0328; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 88 - 150
Target Start/End: Original strand, 11623 - 11685
Alignment:
Q  88 agagggaccaaaaacataaggaatattttagagagactaaaattaaatgttggtgtatttaaa 150  Q
    ||||||||||||||| |||| |||||||||||| ||||||||| |||| || || ||||||||    
T  11623 agagggaccaaaaacctaagaaatattttagagtgactaaaatcaaatattcgtatatttaaa 11685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 84 - 154
Target Start/End: Original strand, 175528 - 175598
Alignment:
Q  84 ttttagagggaccaaaaacataaggaatattttagagagactaaaattaaatgttggtgtatttaaaagga 154  Q
    ||||| |||||| |||||  ||||||| ||||||||||||||||||| ||| |||||| |||||| |||||    
T  175528 ttttatagggactaaaaatttaaggaaaattttagagagactaaaataaaaagttggtatatttataagga 175598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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