View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17793_high_65 (Length: 299)
Name: NF17793_high_65
Description: NF17793
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17793_high_65 |
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Alignment Details
Target: chr7 (Bit Score: 261; Significance: 1e-145; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 1 - 282
Target Start/End: Original strand, 511041 - 511322
Alignment:
| Q |
1 |
gaagaatcacgaaatgtacttaatatatcatttcatttccaaccagagtgtttggctcatgacgaggttcaacaaaaatatggtaagatgaaaggatagt |
100 |
Q |
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| T |
511041 |
gaagaatcacgaaatgtacttaatatatcatttcatttccaaccagagtgtttggctcatgacgaggttcaacaaaaatatggtaagatgaaaggatagt |
511140 |
T |
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| Q |
101 |
aagaacaaatccatattacaaatcaaagaagaaaatttaatcaaatttgagagcataaaatgttacaaaacaaatttaggctgattttctgggtctcata |
200 |
Q |
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| T |
511141 |
aagaacaaatccatattacaaatcaaagaagaaaatttaatcaaatttgagagcataaaatgttacaaaacaaatttaggctgattttctgggtctcata |
511240 |
T |
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| Q |
201 |
atttgacactgatctgatgccttcaaggttgctaacagtccatgcagcaactatgtcctannnnnnnaattcagttcaatac |
282 |
Q |
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| T |
511241 |
atttgacactgatctgatgccttcaaggttgctaacagtccatgcagcaactatgtcctatttttttaattcagttcaatac |
511322 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 2 - 256
Target Start/End: Complemental strand, 582869 - 582615
Alignment:
| Q |
2 |
aagaatcacgaaatgtacttaatatatcatttcatttccaaccagagtgtttggctcatgacgaggttcaacaaaaatatggtaagatgaaaggatagta |
101 |
Q |
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| T |
582869 |
aagaaccacgaaatgtacttaatatatcatttcatttccaaccagagggtttagctcatgacgaggttcaacaaaaatatggtaagatgaaagaatagta |
582770 |
T |
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| Q |
102 |
agaacaaatccatattacaaatcaaagaagaaaatttaatcaaatttgagagcataaaatgttacaaaacaaatttaggctgattttctgggtctcataa |
201 |
Q |
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| T |
582769 |
tgaacagatccatattacaaatcaaagaagaaaattaaatcaaatttgagatcataaaatgttacaaaacaaatttaggttgattttctggatctcacaa |
582670 |
T |
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| Q |
202 |
tttgacactgatctgatgccttcaaggttgctaacagtccatgcagcaactatgt |
256 |
Q |
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|||| ||||| || ||||||||||||||||||||| |||||| ||||||||||| |
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| T |
582669 |
tttggcactggtcatatgccttcaaggttgctaacactccatgtagcaactatgt |
582615 |
T |
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