View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17793_high_7 (Length: 669)
Name: NF17793_high_7
Description: NF17793
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17793_high_7 |
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| [»] scaffold0037 (7 HSPs) |
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Alignment Details
Target: scaffold0037 (Bit Score: 88; Significance: 6e-42; HSPs: 7)
Name: scaffold0037
Description:
Target: scaffold0037; HSP #1
Raw Score: 88; E-Value: 6e-42
Query Start/End: Original strand, 97 - 208
Target Start/End: Complemental strand, 104787 - 104676
Alignment:
| Q |
97 |
tacaaaagcagcaaagcaacacaaagaagagatgttttaacaaaagaaaaaatgcaacagttgtcaatgtcacgcaagatgttggaacataaatttacca |
196 |
Q |
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| T |
104787 |
tacaaaagcagcaaagcaacacaaagacaagatgttttaacaaaagcaaaaatgcaacagttgtcaatgacacgcaagatgttgggacataaatttacca |
104688 |
T |
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| Q |
197 |
gtttcttaattt |
208 |
Q |
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| T |
104687 |
gtttcctaattt |
104676 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0037; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 356 - 414
Target Start/End: Complemental strand, 104220 - 104162
Alignment:
| Q |
356 |
tcaagagtctgctaaaatcctaacatattcactgctaaaatccaaatacattatccctt |
414 |
Q |
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| T |
104220 |
tcaagagtctgctaaaatcctaacatatttactgctaaaatccttatacattatccctt |
104162 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0037; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 121 - 208
Target Start/End: Original strand, 30236 - 30323
Alignment:
| Q |
121 |
agaagagatgttttaacaaaagaaaaaatgcaacagttgtcaatgtcacgcaagatgttggaacataaatttaccagtttcttaattt |
208 |
Q |
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| T |
30236 |
agaaaagatgttttaaccaaagcaaaaatgcaacacttatcaatgacacgcaatatgttcggacataaatttgcaagtttcttaattt |
30323 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0037; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 204 - 247
Target Start/End: Original strand, 30964 - 31007
Alignment:
| Q |
204 |
aatttctatgatatactcctgtatgattgttgtaataaaagtga |
247 |
Q |
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| T |
30964 |
aatttctatgatatactcgtgtatgattcttgtaataaaagtga |
31007 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0037; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 351 - 388
Target Start/End: Original strand, 31254 - 31291
Alignment:
| Q |
351 |
acaattcaagagtctgctaaaatcctaacatattcact |
388 |
Q |
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| T |
31254 |
acaaatcaagagtctgctaaaatcctaacatattcact |
31291 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0037; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 8 - 73
Target Start/End: Complemental strand, 105004 - 104939
Alignment:
| Q |
8 |
agtagcataggtccaagtctaagttaagtattcagaagaaaggtgttgcaaacttcccgacctttt |
73 |
Q |
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| T |
105004 |
agtaacataggtccaagtctcagttaagtattcacgagaaaagcgttgcaaacttcttgacctttt |
104939 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0037; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 280 - 345
Target Start/End: Original strand, 31029 - 31098
Alignment:
| Q |
280 |
ttgtctgcattacattatatgcagcagacactaatattgttagatattgac----agagtttctaaatta |
345 |
Q |
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| T |
31029 |
ttgtttgcattacactatgttcagcagacaccaataatgttagatattgacaccgagagtttctaaatta |
31098 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 52; Significance: 2e-20; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 8 - 82
Target Start/End: Complemental strand, 14200455 - 14200380
Alignment:
| Q |
8 |
agtagcataggtccaagtctaagttaagtattcagaagaaaggtgttgcaaacttcccgacctttt-acttgaaga |
82 |
Q |
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| T |
14200455 |
agtaacataggtccaagtctcagttaagtattcacgagaaaggtgttgcaaacttcccgaccttttcacttgaaga |
14200380 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 356 - 414
Target Start/End: Complemental strand, 14199895 - 14199837
Alignment:
| Q |
356 |
tcaagagtctgctaaaatcctaacatattcactgctaaaatccaaatacattatccctt |
414 |
Q |
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| T |
14199895 |
tcaagagtctactaaaattctaacatattcacggctaaaatcctaatacattatccctt |
14199837 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 97 - 163
Target Start/End: Complemental strand, 14200238 - 14200172
Alignment:
| Q |
97 |
tacaaaagcagcaaagcaacacaaagaagagatgttttaacaaaagaaaaaatgcaacagttgtcaa |
163 |
Q |
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| T |
14200238 |
tacaaaagcagcaaagccacacaaagaaaatatgttttaacaaaagcaaaaatgaaaccgttgtcaa |
14200172 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 306 - 349
Target Start/End: Complemental strand, 14200170 - 14200127
Alignment:
| Q |
306 |
gacactaatattgttagatattgacagagtttctaaattaatct |
349 |
Q |
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| T |
14200170 |
gacactcatattgttagatatttacagagtttctaaattaatct |
14200127 |
T |
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