View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17793_high_81 (Length: 262)
Name: NF17793_high_81
Description: NF17793
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17793_high_81 |
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Alignment Details
Target: chr8 (Bit Score: 231; Significance: 1e-127; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 21 - 255
Target Start/End: Complemental strand, 2906230 - 2905996
Alignment:
| Q |
21 |
gttgtggaggtgggagatgaatttggtggcggcagcgaggaagaacaccaccataatgatgattttgttgagcatcatgagtccaaaaaagaacaagaca |
120 |
Q |
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| T |
2906230 |
gttgtggaggtgggagatgaatttggtggcggcagcgaggaagaacaccaccataatgatgattttgttgagcatcatgagtccaaaaaagaacaagaca |
2906131 |
T |
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| Q |
121 |
taccacaaacattgataacggttgaacattagtctagataaagtgaaattccgttgtaaatgtcttaatggattgaatgcacatggtgatatgtatatga |
220 |
Q |
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| T |
2906130 |
taccacaaacattgataacggttgaacactagtctagataaagtgaaattccgttgtaaatgtcttaatggattgaatgcacatggtgatatgtatatga |
2906031 |
T |
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| Q |
221 |
tattggagtctaatacacacaagtgatgatgatgt |
255 |
Q |
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| T |
2906030 |
tattggagtctaatacacacaagtgatgatgatgt |
2905996 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 21 - 255
Target Start/End: Complemental strand, 2854202 - 2853968
Alignment:
| Q |
21 |
gttgtggaggtgggagatgaatttggtggcggcagcgaggaagaacaccaccataatgatgattttgttgagcatcatgagtccaaaaaagaacaagaca |
120 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2854202 |
gttgtggagatgggagatgaatttggtggcggcagcgaggaagaacaccaccataatgatgattttgttgagcatcatgagtccaaaaaagaacaagaca |
2854103 |
T |
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| Q |
121 |
taccacaaacattgataacggttgaacattagtctagataaagtgaaattccgttgtaaatgtcttaatggattgaatgcacatggtgatatgtatatga |
220 |
Q |
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| T |
2854102 |
taccacaaacattgataacggttgaacactagtctagataaagtgaaattccgttgtaaatgtcttaatggattgaatgcacatggtgatatgtatatga |
2854003 |
T |
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| Q |
221 |
tattggagtctaatacacacaagtgatgatgatgt |
255 |
Q |
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| T |
2854002 |
tattggagtctaatacacacaagtgatgatgatgt |
2853968 |
T |
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