View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17793_high_84 (Length: 254)
Name: NF17793_high_84
Description: NF17793
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17793_high_84 |
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Alignment Details
Target: chr4 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 39109326 - 39109088
Alignment:
| Q |
1 |
ttgaggttaatattttcttatgattattattatagttacatccttgttagcattatggatcaaaaatcgtggccttggaggaaaaagtcatcagaaaaga |
100 |
Q |
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| T |
39109326 |
ttgaggttaatattttcttatgattattattatagttacatccttgttagcattatggatcaaaaatcgtggccttggaggaaaaagtcatcagaaaaga |
39109227 |
T |
|
| Q |
101 |
caattttaactactgaaaatggagaggtaataagctagttgnnnnnnnnngcatcaatttatttatattctgaatttcattttgcaagttttatggaaca |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39109226 |
caattttaactactgaaaatggagaggtaataagctagttg-ttttttttgcatcaatttatttatattctgaatttcattttgcaagttttatggaacc |
39109128 |
T |
|
| Q |
201 |
tttggaagtttatataattgttttttatgttaaccctttg |
240 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
39109127 |
tttggaagtttatataattgttttttatgttaaccctttg |
39109088 |
T |
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