View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17793_high_87 (Length: 251)
Name: NF17793_high_87
Description: NF17793
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17793_high_87 |
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Alignment Details
Target: chr6 (Bit Score: 221; Significance: 1e-122; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 14 - 234
Target Start/End: Original strand, 31269193 - 31269413
Alignment:
| Q |
14 |
cataggaatcatcgaagctctccaaaataattcctcttcattcatatcatgcatagccattggaatcttcaaaaattcctccaacccatttgaagtaatc |
113 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31269193 |
cataggaatcatcgaagctctccaaaataattcctcttcattcatatcatgcatagccattggaatcttcaaaaattcctccaacccatttgaagtaatc |
31269292 |
T |
|
| Q |
114 |
accaaactcttctcattgatagaaatatttgtttggttatgatcatttgatggatttgagaggtttgatgagataggaggtgaatgagaaaaatgggaag |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31269293 |
accaaactcttctcattgatagaaatatttgtttggttatgatcatttgatggatttgagaggtttgatgagataggaggtgaatgagaaaaatgggaag |
31269392 |
T |
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| Q |
214 |
atggattgaagctaaaaggtg |
234 |
Q |
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||||||||||||||||||||| |
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| T |
31269393 |
atggattgaagctaaaaggtg |
31269413 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 49; Significance: 4e-19; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 27 - 111
Target Start/End: Complemental strand, 1139400 - 1139316
Alignment:
| Q |
27 |
gaagctctccaaaataattcctcttcattcatatcatgcatagccattggaatcttcaaaaattcctccaacccatttgaagtaa |
111 |
Q |
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| T |
1139400 |
gaagctctccaaaataattcatcctcattcatgtcatgcatagccttaggaatctttaataattcttccaatccatttgaagtaa |
1139316 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 27 - 111
Target Start/End: Complemental strand, 1136189 - 1136105
Alignment:
| Q |
27 |
gaagctctccaaaataattcctcttcattcatatcatgcatagccattggaatcttcaaaaattcctccaacccatttgaagtaa |
111 |
Q |
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|||||||||||||||||||| || || ||||| |||||||||||| | |||||||| || ||||| ||||| ||||||||||||| |
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| T |
1136189 |
gaagctctccaaaataattcatcctcgttcatgtcatgcatagccttaggaatctttaataattcttccaaaccatttgaagtaa |
1136105 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 27 - 111
Target Start/End: Original strand, 54479337 - 54479421
Alignment:
| Q |
27 |
gaagctctccaaaataattcctcttcattcatatcatgcatagccattggaatcttcaaaaattcctccaacccatttgaagtaa |
111 |
Q |
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|||||||||||||| ||||| || |||||||| |||||||||||||| ||||||||||| || || | |||||||| |||||||| |
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| T |
54479337 |
gaagctctccaaaacaattcatcctcattcatgtcatgcatagccataggaatcttcaacaagtctttcaacccatgtgaagtaa |
54479421 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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