View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17793_high_91 (Length: 244)
Name: NF17793_high_91
Description: NF17793
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17793_high_91 |
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| [»] chr5 (1 HSPs) |
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| [»] scaffold0020 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 211; Significance: 1e-116; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 1 - 244
Target Start/End: Original strand, 20865170 - 20865427
Alignment:
| Q |
1 |
tagaaaaatataaatataaaaccaattaacgacttttcaaagaaacaatcaatcaaaattataaattgtctactaaatatacagaacaaatttcaatttt |
100 |
Q |
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| T |
20865170 |
tagaaaaatataaatataaaaccaattaacgacttttcaaagaaacaatcaatcaaaattataaattgtctactaaatatacagaacaaatttcaatttt |
20865269 |
T |
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| Q |
101 |
tcctattcccatcaaactttaggtaattgacgttgcattacaattactagagtggaccaaatagcacttcatagagtcta--------------gaatct |
186 |
Q |
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| T |
20865270 |
tcctattcccatcaaactttaggtaattgacgttgcattacaattactagagtggaccaaatagcacttcatagagtctagtgtaacgaatatcgaatct |
20865369 |
T |
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| Q |
187 |
agatggtaaaataaatttaattcaaggaaatatgaataatatgcttgaaccatttcaa |
244 |
Q |
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| T |
20865370 |
agatggtaaaataaatttaattcaaggaaatatgaataatatgcttgaaccatttcaa |
20865427 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0020 (Bit Score: 59; Significance: 4e-25; HSPs: 1)
Name: scaffold0020
Description:
Target: scaffold0020; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 125 - 243
Target Start/End: Original strand, 134051 - 134168
Alignment:
| Q |
125 |
aattgacgttgcattacaattactagagtggaccaaatagcacttcatagagtctagaatctagatggtaaaataaatttaattcaaggaaatatgaata |
224 |
Q |
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| T |
134051 |
aattgacgttacattacaattactagagtggactatatagcaccttgcagagtctaaaatcta-atggtaaaatatgtttaattcaaggaaatgtgaata |
134149 |
T |
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| Q |
225 |
atatgcttgaaccatttca |
243 |
Q |
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| T |
134150 |
atatgcttgactcatttca |
134168 |
T |
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