View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17793_low_1 (Length: 1133)

Name: NF17793_low_1
Description: NF17793
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17793_low_1
NF17793_low_1
[»] chr3 (2 HSPs)
chr3 (17-885)||(28563483-28564360)
chr3 (952-1112)||(28563256-28563416)
[»] chr4 (1 HSPs)
chr4 (753-798)||(8431545-8431590)
[»] chr1 (1 HSPs)
chr1 (753-801)||(34154887-34154935)


Alignment Details
Target: chr3 (Bit Score: 696; Significance: 0; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 696; E-Value: 0
Query Start/End: Original strand, 17 - 885
Target Start/End: Complemental strand, 28564360 - 28563483
Alignment:
Q  17 atcatcatggtatactaaatgacctgaagggattgttgacaacccctcattcacagttgggaaaaatcagacctaccaagggacctgaagggattgtcga 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||    
T  28564360 atcatcatggtatactaaatgacctgaagggattgttgacaacccctcattcacagttgggaaaaatcagacctaccaagggagctgaagggattgttga 28564261  T
Q  117 cagccccttattaacagttgggaaaaaccagattgtccaaatttaaata--atactatagcagctccaatccgacagcatgaacacagcgattaccacaa 214  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||| ||||||||||||||||||||| |||||||||||    
T  28564260 cagccccttattaacagttgggaaaaaccagattgtccaaatttaaatacaatactatagcagctctaatccgacagcatgaacacagggattaccacaa 28564161  T
Q  215 tccaaattcatatttggggttcaatgaaatgttgttggcctgattattaaggtgtacaacatgataaatagcgaagggtgatgtgctcggcattggttta 314  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28564160 tccaaattcatatttggggttcaatgaaatgttgttggcctgattattaaggtgtacaacatgataaatagcgaagggtgatgtgctcggcattggttta 28564061  T
Q  315 gattaatctattggttgttctgtattattggttacctttcaatatagtgtatgtttactgttattgctatttggttggtctgcataattgcagagtgatt 414  Q
    |||| ||||||||   ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||    
T  28564060 gattgatctattg---gttctgtattattggttgcctttcaatatagtgtatgtttactgttattgctatttggttggtctgcataattgc--agtgatt 28563966  T
Q  415 gtatcaaactattggttaatgaatcctttcatatcttaatcatgtgaaaaatatacagggaacaatcaaggataaacaagaacataaaatgagaaaatac 514  Q
     ||||||||||||||||||| ||||||||||||||   ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28563965 atatcaaactattggttaattaatcctttcatatc---atcatgtgaaaaatatacagggaacaatcaaggataaacaagaacataaaatgagaaaatac 28563869  T
Q  515 tcaataatattctcagaaatggttccttaacacagcataatagtaaagattaacactttaataccccaagtacacacaccta------tataaaactgtt 608  Q
    ||||||||||||||||||  ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||      ||||||||| ||    
T  28563868 tcaataatattctcagaataggttccttaacacagcaaaatagtaaagattaacactttaataccccaagtacacacacctatatgattataaaactatt 28563769  T
Q  609 aaaattaatca---------nnnnnnnctaactctaactcaaaccccagtagatccaaaaccaccttcacctctaacagtagaatccaaatccaaaacct 699  Q
    |||||||||||                | | ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28563768 aaaattaatcattttctaactcaaactcaagctcaaactcaaaccccagtagatccaaaaccaccttcacctctaacagtagaatccaaatccaaaacct 28563669  T
Q  700 cagaaacttccggagtaataatcttctcaataatcaactgagcaactctatcaccaactttcacttcaaaatcaacatcagaatgattaaacagtataac 799  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28563668 cagaaacttccggagtaataatcttctcaataatcaactgagcaactctatcaccaactttcacttcaaaatcaacatcagaatgattaaacagtataac 28563569  T
Q  800 cccaacaggtcctctgtaatcagcatcaatcacaccggcaccaacatcaatcgaatgcttccatgtcaaaccagatctcggagctg 885  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  28563568 cccaacaggtcctctgtaatcagcatcaatcacaccagcaccaacatcaatcgaatgcttccatgtcaaaccagatctcggagctg 28563483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 137; E-Value: 6e-71
Query Start/End: Original strand, 952 - 1112
Target Start/End: Complemental strand, 28563416 - 28563256
Alignment:
Q  952 ggggaaaacagtaattaattaccaacacgagcataggttccttccgggacggcgatggagagatctgtggggatgagagctttgccgcgagcaggaacct 1051  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||| |||||||    
T  28563416 ggggaaaacagtaattaattaccaacacgagcataggttccttcagggacggcgacggagagatctgtggggatgagagctttgccgcgagccggaacct 28563317  T
Q  1052 tagaatcggcggcgctggagagatcgtatccggcggatagaggggagccgcgggaaggtat 1112  Q
    | ||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||    
T  28563316 ttgaatcggcggcgctggaaagatcgtatccggcggagagaggggagccgcgggaaggtat 28563256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 42; Significance: 0.00000000000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 753 - 798
Target Start/End: Original strand, 8431545 - 8431590
Alignment:
Q  753 ccaactttcacttcaaaatcaacatcagaatgattaaacagtataa 798  Q
    |||||||||||||||||||||||| |||||||||||||||||||||    
T  8431545 ccaactttcacttcaaaatcaacaacagaatgattaaacagtataa 8431590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 41; Significance: 0.0000000000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 753 - 801
Target Start/End: Complemental strand, 34154935 - 34154887
Alignment:
Q  753 ccaactttcacttcaaaatcaacatcagaatgattaaacagtataaccc 801  Q
    |||| ||||||||||||||||||||||||||||||||||| ||||||||    
T  34154935 ccaaatttcacttcaaaatcaacatcagaatgattaaacattataaccc 34154887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University