View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17793_low_10 (Length: 554)
Name: NF17793_low_10
Description: NF17793
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17793_low_10 |
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Alignment Details
Target: chr8 (Bit Score: 514; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 514; E-Value: 0
Query Start/End: Original strand, 13 - 538
Target Start/End: Original strand, 27315154 - 27315679
Alignment:
| Q |
13 |
tcatcaatgagttacaacactccaatgtcatcttaggaagccattcaaatacattcacagaactctgaatgtccaaacattttccatacatgtctatcaa |
112 |
Q |
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| T |
27315154 |
tcatcaatgagttacaacattccaatgtcatcttaggaagccattcaaatacattcacagaactctgaatgtccaaacattttccatacatgtctatcaa |
27315253 |
T |
|
| Q |
113 |
agcagattgaacatacacactcctttcatcaaaaccaaatttcataacacaacaatgaatctgcttccccaaaccaatctctttatttctactacacaaa |
212 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
27315254 |
agcagattgaacatacacactcctttcatcaaaaccaaatttcataacacaacaatgaatctgcttccccaaaccaatctctttatttctactgcacaaa |
27315353 |
T |
|
| Q |
213 |
ttcaagaaaccgatgaacgaacgaactgatggcctatgaccccacatttgcataaaattaaaaaactccaaagcatcatttaccaaattattgtcagcat |
312 |
Q |
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| T |
27315354 |
ttcaagaaaccgatgaacgaacgaactgatggcctatgaccccacatttgcataaaattaaaaaactccaaagcatcatttaccaaattattgtcagcat |
27315453 |
T |
|
| Q |
313 |
aaacagaaaccatagaattccacgaaataacatcctcaacctttatcccttcaaaacacttccttgcactaacgaaacacccgcatgaagagtaaaaatc |
412 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27315454 |
aaacagaaaccatagaattccacgaaataacatcctcaacctttatcccttcaaaacacttccttgcactaacgaaacacccgcatgaagagtaaaaatc |
27315553 |
T |
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| Q |
413 |
caccaaagcattagcaacaaaaacattagattccacaaaacccatcttcaaaacacagctatgaatcatctccccttcatgaaaccttctcttactacta |
512 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27315554 |
caccaaagcattagcaacaaaaacattatattccacaaaacccatcttcaaaacacagctatgaatcatctccccttcatgaaaccttctcttactacta |
27315653 |
T |
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| Q |
513 |
caccccctaagcaaataacaaaaagt |
538 |
Q |
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|||||||||||||||||||||||||| |
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| T |
27315654 |
caccccctaagcaaataacaaaaagt |
27315679 |
T |
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