View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17793_low_101 (Length: 236)
Name: NF17793_low_101
Description: NF17793
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17793_low_101 |
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Alignment Details
Target: chr5 (Bit Score: 194; Significance: 1e-105; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 15 - 216
Target Start/End: Complemental strand, 13339805 - 13339604
Alignment:
| Q |
15 |
gaatattgtgaattgacatggttttgtaggaagaggaaagtaatgaaaattttaataagtgctgaagaaagagccattttgtgatgctacataccaaaga |
114 |
Q |
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| T |
13339805 |
gaatattgtgaattgacatggttttgtaggaagaggaaagtaatgaaaattttaataagtgctgaagaaagagccattttgtgatgctacatacgaaaga |
13339706 |
T |
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| Q |
115 |
aattgtgactatttatagggttgtgttttgtctaagaaaataaattataattaaaatttgccgaaatgaatacgacatgcaactcacatagtaagtgtgt |
214 |
Q |
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| T |
13339705 |
aattgtgactatttatagggttgtgttttgtctaagaaaataaattataattaaaatttgccgaaatgaatacgacatgcaactcacatagtaagtttgt |
13339606 |
T |
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| Q |
215 |
tt |
216 |
Q |
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|| |
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| T |
13339605 |
tt |
13339604 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 15 - 216
Target Start/End: Complemental strand, 13336467 - 13336266
Alignment:
| Q |
15 |
gaatattgtgaattgacatggttttgtaggaagaggaaagtaatgaaaattttaataagtgctgaagaaagagccattttgtgatgctacataccaaaga |
114 |
Q |
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| T |
13336467 |
gaatattgtgaattgacatggttttgtaggaagaggaaagtaatgaaaattttaataagtgctgaagaaagagtcattttgtgatgctacatacgaaaga |
13336368 |
T |
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| Q |
115 |
aattgtgactatttatagggttgtgttttgtctaagaaaataaattataattaaaatttgccgaaatgaatacgacatgcaactcacatagtaagtgtgt |
214 |
Q |
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| T |
13336367 |
aattgtgactatttatagggttgtgttttgtttaagaaaataaattataattaaaattttccgaaatgaatacgacatgcaactcacatagtaagtgtgt |
13336268 |
T |
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| Q |
215 |
tt |
216 |
Q |
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|| |
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| T |
13336267 |
tt |
13336266 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 15 - 87
Target Start/End: Complemental strand, 13345615 - 13345543
Alignment:
| Q |
15 |
gaatattgtgaattgacatggttttgtaggaagaggaaagtaatgaaaattttaataagtgctgaagaaagag |
87 |
Q |
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|||||||||||||| ||||||| ||||||||||| |||||||||| | |||||||||||||| |||||||||| |
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| T |
13345615 |
gaatattgtgaattcacatggtattgtaggaagacgaaagtaatgtagattttaataagtgcggaagaaagag |
13345543 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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