View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17793_low_104 (Length: 231)
Name: NF17793_low_104
Description: NF17793
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17793_low_104 |
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Alignment Details
Target: chr1 (Bit Score: 175; Significance: 2e-94; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 15 - 214
Target Start/End: Original strand, 30238621 - 30238820
Alignment:
| Q |
15 |
caaaggaaaacaagagttacctcttcagtgacacttggtaataataatgttcaaagaagcgttacacttgagtgttgctctttgtcatgtattgtnnnnn |
114 |
Q |
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| T |
30238621 |
caaaggaaaacaagagttacctcttcagtgacacttggtaataataatgttcaaagaagcgttacacttgagtgttgctctttgtcatttattgtaaaaa |
30238720 |
T |
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| Q |
115 |
nnctattttgtaagttgaagaattgttggaaacaatctcttgggtggaaaaggagcagtccacagtatagctatgatcttcaaagctattgtctcaactt |
214 |
Q |
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| T |
30238721 |
aactattttgtaagttgaagaattgttggaaacaatctcttgggtggaaaaggagcagtccacagtatagctatgatcttcaaagctattgtctcaactt |
30238820 |
T |
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Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 170 - 214
Target Start/End: Complemental strand, 39325356 - 39325312
Alignment:
| Q |
170 |
cagtccacagtatagctatgatcttcaaagctattgtctcaactt |
214 |
Q |
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| T |
39325356 |
cagtccacagtatagctatgatcttcgcagttattgtctgaactt |
39325312 |
T |
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