View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17793_low_105 (Length: 228)
Name: NF17793_low_105
Description: NF17793
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17793_low_105 |
 | |
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| [»] scaffold0207 (1 HSPs) |
| | |
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| [»] scaffold0018 (1 HSPs) |
| | |
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| [»] scaffold0185 (1 HSPs) |
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| [»] scaffold0017 (1 HSPs) |
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| [»] scaffold0010 (1 HSPs) |
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| [»] scaffold0752 (1 HSPs) |
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|
| [»] scaffold0387 (1 HSPs) |
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| [»] scaffold0547 (1 HSPs) |
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| [»] scaffold0012 (2 HSPs) |
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| [»] scaffold0073 (1 HSPs) |
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| [»] scaffold0297 (1 HSPs) |
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| [»] scaffold0132 (2 HSPs) |
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| [»] scaffold0739 (1 HSPs) |
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| [»] scaffold0269 (1 HSPs) |
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| [»] scaffold0040 (1 HSPs) |
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| [»] scaffold0738 (1 HSPs) |
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| [»] scaffold0211 (1 HSPs) |
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| [»] scaffold1638 (1 HSPs) |
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| [»] scaffold0016 (1 HSPs) |
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| [»] scaffold0544 (1 HSPs) |
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| [»] scaffold0474 (1 HSPs) |
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| [»] scaffold0194 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 185; Significance: 1e-100; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 20 - 212
Target Start/End: Original strand, 13134393 - 13134585
Alignment:
| Q |
20 |
ctctttcctttgaccttaagaggggctcctcccattttgtcaagaatagatgcatagctgattatctcaccagtctccttgaagtgagctttgatgaact |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13134393 |
ctctttcctttgaccttaagaggggctcctcccattttgtcaagaatagatgcatagctgattatctcaccagtctccttgaagtgagctttgatgaact |
13134492 |
T |
|
| Q |
120 |
gatacagaacctcatgattgtcctcttttgagatgagagggaaatctgtcattagatctgattgaacagtctctatcttcagatcctcttcat |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
13134493 |
gatacagaacctcatgattgtcctcttttgagatgagagggaaatccgtcattagatctgattgaatagtctctatcttcagatcctcttcat |
13134585 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 23 - 187
Target Start/End: Original strand, 15836345 - 15836509
Alignment:
| Q |
23 |
tttcctttgaccttaagaggggctcctcccattttgtcaagaatagatgcatagctgattatctcaccagtctccttgaagtgagctttgatgaactgat |
122 |
Q |
| |
|
||||||||||| || ||||||| |||||||||| ||||| |||| |||| |||||||||| |||||||||| | |||| ||||||||||||||||||||| |
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|
| T |
15836345 |
tttcctttgactttgagaggggttcctcccattgtgtcaggaatggatgaatagctgattgtctcaccagtattcttgtagtgagctttgatgaactgat |
15836444 |
T |
|
| Q |
123 |
acagaacctcatgattgtcctcttttgagatgagagggaaatctgtcattagatctgattgaaca |
187 |
Q |
| |
|
||||||||||| |||||||||||||| ||||| |||| ||||| ||||| || |||||||||||| |
|
|
| T |
15836445 |
acagaacctcaggattgtcctcttttcagatgggaggaaaatccgtcatcaggtctgattgaaca |
15836509 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 20 - 194
Target Start/End: Complemental strand, 11213828 - 11213654
Alignment:
| Q |
20 |
ctctttcctttgaccttaagaggggctcctcccattttgtcaagaatagatgcatagctgattatctcaccagtctccttgaagtgagctttgatgaact |
119 |
Q |
| |
|
||||| ||||| || || ||||| |||||||| || |||||| ||||||||||| ||||| ||| |||||| || ||||||||||||||||||| |
|
|
| T |
11213828 |
ctcttccctttaactttgagaggtgctcctccaatcttgtcaggaatagatgcaacactgatgatcgtaccagtaagctcaaagtgagctttgatgaact |
11213729 |
T |
|
| Q |
120 |
gatacagaacctcatgattgtcctcttttgaga-tgagagggaaatctgtcattagatctgattgaacagtctcta |
194 |
Q |
| |
|
|||||||||||||| |||| |||||||| |||| |||| |||||||| |||||||||||||||||||||| |||| |
|
|
| T |
11213728 |
gatacagaacctcaggattatcctctttagagattgag-gggaaatccatcattagatctgattgaacagtttcta |
11213654 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 20 - 183
Target Start/End: Complemental strand, 14318788 - 14318625
Alignment:
| Q |
20 |
ctctttcctttgaccttaagaggggctcctcccattttgtcaagaatagatgcatagctgattatctcaccagtctccttgaagtgagctttgatgaact |
119 |
Q |
| |
|
||||| ||||| || || ||||| |||||||| || |||||| ||||||||||| ||||| ||||||||||| || ||||||||||||||||||| |
|
|
| T |
14318788 |
ctcttccctttaactttgagaggtgctcctccaatcttgtcaggaatagatgcaacactgataatctcaccagtaagctgaaagtgagctttgatgaact |
14318689 |
T |
|
| Q |
120 |
gatacagaacctcatgattgtcctcttttgaga-tgagagggaaatctgtcattagatctgattg |
183 |
Q |
| |
|
| |||||||||||| |||| |||||||| |||| |||| |||||||| |||||||| |||||||| |
|
|
| T |
14318688 |
ggtacagaacctcaggattatcctctttagagattgag-gggaaatccgtcattaggtctgattg |
14318625 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 20 - 211
Target Start/End: Complemental strand, 15658334 - 15658143
Alignment:
| Q |
20 |
ctctttcctttgaccttaagaggggctcctcccattttgtcaagaatagatgcatagctgattatctcaccagtctccttgaagtgagctttgatgaact |
119 |
Q |
| |
|
||||| ||||| ||||| ||||| |||||||| || |||||| ||||||||||| ||||| || ||| | || || ||||||||||||||| ||| |
|
|
| T |
15658334 |
ctcttccctttaaccttgagaggtgctcctcctatcttgtcaggaatagatgcaacactgatgatttcagccgtaagctgaaagtgagctttgatgtact |
15658235 |
T |
|
| Q |
120 |
gatacagaacctcatgattgtcctcttttgaga-tgagagggaaatctgtcattagatctgattgaacagtctctatcttcagatcctcttca |
211 |
Q |
| |
|
| |||||||||||| ||| ||||||||||||| |||| |||||||| ||||||| |||||||| ||||| |||| ||| |||||||||| |
|
|
| T |
15658234 |
gctacagaacctcagaattatcctcttttgagattgag-gggaaatccttcattaggtctgattgtacagtttctacagtcaaatcctcttca |
15658143 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 154; Significance: 8e-82; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 23 - 212
Target Start/End: Original strand, 22645833 - 22646022
Alignment:
| Q |
23 |
tttcctttgaccttaagaggggctcctcccattttgtcaagaatagatgcatagctgattatctcaccagtctccttgaagtgagctttgatgaactgat |
122 |
Q |
| |
|
||||| |||||||| |||||||||||||||||||| ||| ||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
22645833 |
tttcccttgaccttgagaggggctcctcccattttatcaggaatagaagcatagctgattatctcaccagtctccctgaagtgagctttgatgaactgat |
22645932 |
T |
|
| Q |
123 |
acagaacctcatgattgtcctcttttgagatgagagggaaatctgtcattagatctgattgaacagtctctatcttcagatcctcttcat |
212 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
22645933 |
acagaacctcaagattgtcctcttttgagatgagagggaaatccgtcattagatctgattgaacagtctctgtcttcagatcctcttcat |
22646022 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 20 - 209
Target Start/End: Complemental strand, 20880784 - 20880595
Alignment:
| Q |
20 |
ctctttcctttgaccttaagaggggctcctcccattttgtcaagaatagatgcatagctgattatctcaccagtctccttgaagtgagctttgatgaact |
119 |
Q |
| |
|
||||| ||||| ||||| ||||| ||||||| || |||||| ||||||||||||||||||| || ||||| || || ||||||||||||||| ||| |
|
|
| T |
20880784 |
ctcttccctttaaccttgagaggtactcctcctatcttgtcaggaatagatgcatagctgatgatttcacccgtacactgaaagtgagctttgatgtact |
20880685 |
T |
|
| Q |
120 |
gatacagaacctcatgattgtcctcttttgagatgagagggaaatctgtcattagatctgattgaacagtctctatcttcagatcctctt |
209 |
Q |
| |
|
|||||| ||| ||| ||||||||| | ||||||| ||||||||| ||||| || |||||||| ||||||||| ||||||||||||||| |
|
|
| T |
20880684 |
gatacacaacttcaggattgtcctttcttgagatagaagggaaatccgtcataagttctgattgtacagtctctgtcttcagatcctctt |
20880595 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 101 - 194
Target Start/End: Original strand, 7682272 - 7682365
Alignment:
| Q |
101 |
aagtgagctttgatgaactgatacagaacctcatgattgtcctcttttgaga-tgagagggaaatctgtcattagatctgattgaacagtctcta |
194 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||| |||||||| |||| |||| ||||||| ||||||||||||||||||||||| |||| |
|
|
| T |
7682272 |
aagtgagctttgatgaactgatacagaacctcaggattatcctctttagagattgag-gggaaattcgtcattagatctgattgaacagtttcta |
7682365 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0207 (Bit Score: 137; Significance: 1e-71; HSPs: 1)
Name: scaffold0207
Description:
Target: scaffold0207; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 26 - 206
Target Start/End: Original strand, 23536 - 23716
Alignment:
| Q |
26 |
cctttgaccttaagaggggctcctcccattttgtcaagaatagatgcatagctgattatctcaccagtctccttgaagtgagctttgatgaactgataca |
125 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
23536 |
cctttgaccttgagaggggctcctcccattttgtcaggaatggatgcatagctgattatctcaccagtctccttgaagtgagctttgataaactgataca |
23635 |
T |
|
| Q |
126 |
gaacctcatgattgtcctcttttgagatgagagggaaatctgtcattagatctgattgaacagtctctatcttcagatcct |
206 |
Q |
| |
|
|||||||| |||||||||||||| ||||||||||||| || ||||| ||||||||||||||||| |||| ||||||||||| |
|
|
| T |
23636 |
gaacctcaggattgtcctctttttagatgagagggaagtccgtcatcagatctgattgaacagtttctaccttcagatcct |
23716 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0018 (Bit Score: 134; Significance: 7e-70; HSPs: 1)
Name: scaffold0018
Description:
Target: scaffold0018; HSP #1
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 23 - 212
Target Start/End: Complemental strand, 3819 - 3630
Alignment:
| Q |
23 |
tttcctttgaccttaagaggggctcctcccattttgtcaagaatagatgcatagctgattatctcaccagtctccttgaagtgagctttgatgaactgat |
122 |
Q |
| |
|
||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||| ||||||||||| |
|
|
| T |
3819 |
tttcccttgaccttgagaggggctcctcccattttgtcaagaatagatgcatagctgattatctcattagtctcctcgaagtgagcagagatgaactgat |
3720 |
T |
|
| Q |
123 |
acagaacctcatgattgtcctcttttgagatgagagggaaatctgtcattagatctgattgaacagtctctatcttcagatcctcttcat |
212 |
Q |
| |
|
| ||||||||| |||| ||||||||||||||| |||| |||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
3719 |
atagaacctcaggattatcctcttttgagatgggaggaaaatctgtcattagatctgattgaacagtctctaccttcagatcctcttcat |
3630 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 134; Significance: 7e-70; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 23 - 212
Target Start/End: Complemental strand, 24811875 - 24811686
Alignment:
| Q |
23 |
tttcctttgaccttaagaggggctcctcccattttgtcaagaatagatgcatagctgattatctcaccagtctccttgaagtgagctttgatgaactgat |
122 |
Q |
| |
|
||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||| ||||||||||| |
|
|
| T |
24811875 |
tttcccttgaccttgagaggggctcctcccattttgtcaagaatagatgcatagctgattatctcattagtctcctcgaagtgagcagagatgaactgat |
24811776 |
T |
|
| Q |
123 |
acagaacctcatgattgtcctcttttgagatgagagggaaatctgtcattagatctgattgaacagtctctatcttcagatcctcttcat |
212 |
Q |
| |
|
| ||||||||| |||| ||||||||||||||| |||| |||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
24811775 |
atagaacctcaggattatcctcttttgagatgggaggaaaatctgtcattagatctgattgaacagtctctaccttcagatcctcttcat |
24811686 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 20 - 212
Target Start/End: Complemental strand, 19310152 - 19309960
Alignment:
| Q |
20 |
ctctttcctttgaccttaagaggggctcctcccattttgtcaagaatagatgcatagctgattatctcaccagtctccttgaagtgagctttgatgaact |
119 |
Q |
| |
|
||||| ||||| ||||| |||||||||||||| || |||||| | ||||||||||||||||| || ||||| || | || ||||||| ||||||||| | |
|
|
| T |
19310152 |
ctcttccctttaaccttgagaggggctcctcctatcttgtcagggatagatgcatagctgataatttcacccgtattctgaaagtgagatttgatgaatt |
19310053 |
T |
|
| Q |
120 |
gatacagaacctcatgattgtcctcttttgagatgagagggaaatctgtcattagatctgattgaacagtctctatcttcagatcctcttcat |
212 |
Q |
| |
|
|||||||||||||| ||||||||||| |||||||| |||||||||||||| ||||||||||||||| ||||| ||||||||| |||||||| |
|
|
| T |
19310052 |
gatacagaacctcaggattgtcctctcttgagatggaggggaaatctgtcataagatctgattgaacaatctctgtcttcagattctcttcat |
19309960 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 101 - 194
Target Start/End: Complemental strand, 21169576 - 21169483
Alignment:
| Q |
101 |
aagtgagctttgatgaactgatacagaacctcatgattgtcctcttttgaga-tgagagggaaatctgtcattagatctgattgaacagtctcta |
194 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||| |||||||| ||| |||| |||||||||||||||||||||||||||||||| |||| |
|
|
| T |
21169576 |
aagtgagctttgatgaactgatacagaacctcaggattatcctctttatagattgag-gggaaatctgtcattagatctgattgaacagtttcta |
21169483 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 101 - 194
Target Start/End: Complemental strand, 24422620 - 24422527
Alignment:
| Q |
101 |
aagtgagctttgatgaactgatacagaacctcatgattgtcctcttttgaga-tgagagggaaatctgtcattagatctgattgaacagtctcta |
194 |
Q |
| |
|
||||||||||||||||||| ||||||||||||| |||| |||||||| |||| |||| |||||||| ||||||||||||||||||| ||| |||| |
|
|
| T |
24422620 |
aagtgagctttgatgaactaatacagaacctcaagattatcctctttagagattgag-gggaaatccgtcattagatctgattgaatagtttcta |
24422527 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0185 (Bit Score: 133; Significance: 3e-69; HSPs: 1)
Name: scaffold0185
Description:
Target: scaffold0185; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 20 - 212
Target Start/End: Original strand, 12236 - 12428
Alignment:
| Q |
20 |
ctctttcctttgaccttaagaggggctcctcccattttgtcaagaatagatgcatagctgattatctcaccagtctccttgaagtgagctttgatgaact |
119 |
Q |
| |
|
||||||||||| ||||| |||| ||||||||| ||||||||| ||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||| |
|
|
| T |
12236 |
ctctttcctttaaccttgagagaggctcctccaattttgtcaggaatagatgcatagctgattatctcgccagtttccttgaagtgagctttgatgaact |
12335 |
T |
|
| Q |
120 |
gatacagaacctcatgattgtcctcttttgagatgagagggaaatctgtcattagatctgattgaacagtctctatcttcagatcctcttcat |
212 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||| ||| ||||||||||| |||||| |||||||||||||| |||| ||||||||||||| |
|
|
| T |
12336 |
gatacagaacctcaggattgtcctcttttgagatggaaggaaaatctgtcatgagatcttattgaacagtctctgtctttagatcctcttcat |
12428 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 120; Significance: 2e-61; HSPs: 8)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 45 - 212
Target Start/End: Complemental strand, 19459122 - 19458955
Alignment:
| Q |
45 |
ctcctcccattttgtcaagaatagatgcatagctgattatctcaccagtctccttgaagtgagctttgatgaactgatacagaacctcatgattgtcctc |
144 |
Q |
| |
|
||||||||||||||||| |||| ||||||||||||||||||||||| || |||| || |||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
19459122 |
ctcctcccattttgtcaggaatggatgcatagctgattatctcacccgtatcctgaaaatgagctttgatgaactgatacagaacctcaggattgtcctc |
19459023 |
T |
|
| Q |
145 |
ttttgagatgagagggaaatctgtcattagatctgattgaacagtctctatcttcagatcctcttcat |
212 |
Q |
| |
|
||||||||||||||| ||||||||||| |||||||||| |||||||||| |||||||||||||||||| |
|
|
| T |
19459022 |
ttttgagatgagaggaaaatctgtcataagatctgattaaacagtctctgtcttcagatcctcttcat |
19458955 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 20 - 189
Target Start/End: Complemental strand, 25683867 - 25683698
Alignment:
| Q |
20 |
ctctttcctttgaccttaagaggggctcctcccattttgtcaagaatagatgcatagctgattatctcaccagtctccttgaagtgagctttgatgaact |
119 |
Q |
| |
|
||||| ||||| ||||| ||||| ||||||||||| |||||| |||| |||||||||||||| || ||||| || |||||||||||||||||||||| |
|
|
| T |
25683867 |
ctcttccctttaaccttgagaggtgctcctcccatcttgtcaggaatggatgcatagctgatgattgttccagtttcattgaagtgagctttgatgaact |
25683768 |
T |
|
| Q |
120 |
gatacagaacctcatgattgtcctcttttgagat-gagagggaaatctgtcattagatctgattgaacagt |
189 |
Q |
| |
|
| |||||||||||| |||| |||||||||||||| ||| |||||||| |||||||| |||||||| ||||| |
|
|
| T |
25683767 |
ggtacagaacctcaggattatcctcttttgagatagag-gggaaatccgtcattaggtctgattgtacagt |
25683698 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 23 - 154
Target Start/End: Original strand, 19485582 - 19485712
Alignment:
| Q |
23 |
tttcctttgaccttaagaggggctcctcccattttgtcaagaatagatgcatagctgattatctcaccagtctccttgaagtgagctttgatgaactgat |
122 |
Q |
| |
|
|||||||||||||| ||| ||||||||| |||| ||||| ||||||| ||| ||||||||||||||||||||||||||||||||| ||| ||||||| |
|
|
| T |
19485582 |
tttcctttgaccttgagatgggctcctctcattgtgtcaggaatagacgcaaggctgattatctcaccagtctccttgaagtgagcagagataaactgat |
19485681 |
T |
|
| Q |
123 |
acagaacctcatgattgtcctcttttgagatg |
154 |
Q |
| |
|
||||||||||| |||| | ||||||||||||| |
|
|
| T |
19485682 |
acagaacctcaggatt-ttctcttttgagatg |
19485712 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 26 - 211
Target Start/End: Original strand, 17782601 - 17782786
Alignment:
| Q |
26 |
cctttgaccttaagaggggctcctcccattttgtcaagaatagatgcatagctgattatctcaccagtctccttgaagtgagctttgatgaactgataca |
125 |
Q |
| |
|
||||| ||||| ||||| |||||||| || || ||| ||||||||||| |||||| || ||||| || | || ||||||||||| ||| ||||||||| |
|
|
| T |
17782601 |
cctttaaccttgagaggtgctcctcctatcttctcaggaatagatgcaatgctgataatttcacccgtatgctgaaagtgagcttttatgtactgataca |
17782700 |
T |
|
| Q |
126 |
gaacctcatgattgtcctcttttgagatgagagggaaatctgtcattagatctgattgaacagtctctatcttcagatcctcttca |
211 |
Q |
| |
|
|||| ||| ||||||||||| ||||||| ||||||||| ||||| |||| |||||| ||| ||||| ||||||||||||||||| |
|
|
| T |
17782701 |
gaacttcaggattgtcctctcttgagatagaagggaaatccgtcataagatatgattgtacattctctgtcttcagatcctcttca |
17782786 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 23 - 153
Target Start/End: Original strand, 1653836 - 1653966
Alignment:
| Q |
23 |
tttcctttgaccttaagaggggctcctcccattttgtcaagaatagatgcatagctgattatctcaccagtctccttgaagtgagctttgatgaactgat |
122 |
Q |
| |
|
||||| |||||||| ||||| |||||||||||||||||| |||| ||||||||| |||||||||||| ||| | ||||||||||||| || || |||| |
|
|
| T |
1653836 |
tttcccttgaccttgagaggtgctcctcccattttgtcaggaattgatgcatagatgattatctcactagtattcttgaagtgagctgaaataaaatgat |
1653935 |
T |
|
| Q |
123 |
acagaacctcatgattgtcctcttttgagat |
153 |
Q |
| |
|
| |||||||||||||| ||||| |||||||| |
|
|
| T |
1653936 |
atagaacctcatgattatcctcctttgagat |
1653966 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 20 - 211
Target Start/End: Original strand, 18546428 - 18546623
Alignment:
| Q |
20 |
ctctttcctttgaccttaagaggggctcctcccattttgtcaagaatagatgcatagctgattatctcaccagtctccttgaagtgagctttgatgaact |
119 |
Q |
| |
|
||||| ||||| ||||| ||||| |||||||| || |||||| ||||||||||||||| ||| || ||||| || | || |||||||||||||| | | |
|
|
| T |
18546428 |
ctcttccctttaaccttgagaggtgctcctcctatcttgtcaggaatagatgcatagcggataatttcacccgtattctgaaagtgagctttgatatatt |
18546527 |
T |
|
| Q |
120 |
gatacagaacctcatgat----tgtcctcttttgagatgagagggaaatctgtcattagatctgattgaacagtctctatcttcagatcctcttca |
211 |
Q |
| |
|
|||||| ||||||| ||| |||||||| ||||||| ||||||||| ||||| || |||||||||||||||||| |||||| |||||||||| |
|
|
| T |
18546528 |
gatacaaaacctcaggatatattgtcctctcttgagatagaagggaaatccgtcataagttctgattgaacagtctctgtcttcaaatcctcttca |
18546623 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 27 - 84
Target Start/End: Original strand, 17050501 - 17050558
Alignment:
| Q |
27 |
ctttgaccttaagaggggctcctcccattttgtcaagaatagatgcatagctgattat |
84 |
Q |
| |
|
|||||||||| |||||||||||||||||||| ||| |||| |||||| ||||||||| |
|
|
| T |
17050501 |
ctttgaccttgagaggggctcctcccattttctcaggaattgatgcaatgctgattat |
17050558 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 20 - 77
Target Start/End: Original strand, 18546178 - 18546235
Alignment:
| Q |
20 |
ctctttcctttgaccttaagaggggctcctcccattttgtcaagaatagatgcatagc |
77 |
Q |
| |
|
||||| ||||| ||||| ||||| |||||||| || |||||| ||||||||||||||| |
|
|
| T |
18546178 |
ctcttccctttaaccttgagaggtgctcctcctatcttgtcaggaatagatgcatagc |
18546235 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0017 (Bit Score: 117; Significance: 9e-60; HSPs: 1)
Name: scaffold0017
Description:
Target: scaffold0017; HSP #1
Raw Score: 117; E-Value: 9e-60
Query Start/End: Original strand, 20 - 212
Target Start/End: Complemental strand, 51016 - 50824
Alignment:
| Q |
20 |
ctctttcctttgaccttaagaggggctcctcccattttgtcaagaatagatgcatagctgattatctcaccagtctccttgaagtgagctttgatgaact |
119 |
Q |
| |
|
||||| ||||| ||||| |||||||||||||| ||||||||| | ||||||||||||||||| || ||||| || |||| ||||||||||||||||||| |
|
|
| T |
51016 |
ctcttccctttaaccttgagaggggctcctcctattttgtcagggatagatgcatagctgataatttcacccgtatcctgaaagtgagctttgatgaact |
50917 |
T |
|
| Q |
120 |
gatacagaacctcatgattgtcctcttttgagatgagagggaaatctgtcattagatctgattgaacagtctctatcttcagatcctcttcat |
212 |
Q |
| |
|
|||||||||||||| ||||||||||| |||||||| |||||||||||||||||||||||||||||||||||| |||| ||||||||||||| |
|
|
| T |
50916 |
gatacagaacctcaggattgtcctctcttgagatggaggggaaatctgtcattagatctgattgaacagtctctgtctttagatcctcttcat |
50824 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0010 (Bit Score: 117; Significance: 9e-60; HSPs: 1)
Name: scaffold0010
Description:
Target: scaffold0010; HSP #1
Raw Score: 117; E-Value: 9e-60
Query Start/End: Original strand, 20 - 212
Target Start/End: Original strand, 107986 - 108178
Alignment:
| Q |
20 |
ctctttcctttgaccttaagaggggctcctcccattttgtcaagaatagatgcatagctgattatctcaccagtctccttgaagtgagctttgatgaact |
119 |
Q |
| |
|
||||||||||| ||||| |||||| ||| |||||| |||||| |||| || ||||||||||||||||||||||| | || ||||||||||||||||| | |
|
|
| T |
107986 |
ctctttcctttaaccttgagagggcctcgtcccatattgtcaggaatggaagcatagctgattatctcaccagtattctgaaagtgagctttgatgaatt |
108085 |
T |
|
| Q |
120 |
gatacagaacctcatgattgtcctcttttgagatgagagggaaatctgtcattagatctgattgaacagtctctatcttcagatcctcttcat |
212 |
Q |
| |
|
|||||||||||||| ||||||||| ||||||||||||||| ||||||||||| ||||||||||||| ||||||| |||||||||||||||||| |
|
|
| T |
108086 |
gatacagaacctcaggattgtcctattttgagatgagaggaaaatctgtcataagatctgattgaatagtctctgtcttcagatcctcttcat |
108178 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 115; Significance: 1e-58; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 22 - 212
Target Start/End: Original strand, 23481197 - 23481387
Alignment:
| Q |
22 |
ctttcctttgaccttaagaggggctcctcccattttgtcaagaatagatgcatagctgattatctcaccagtctccttgaagtgagctttgatgaactga |
121 |
Q |
| |
|
|||||||||||| || ||||||||| |||| || | ||| | || || ||||| ||||||||||| |||||||||||||||||||||||||| |||||| |
|
|
| T |
23481197 |
ctttcctttgacttttagaggggcttctccaatagtatcaggtatggaagcataactgattatctccccagtctccttgaagtgagctttgataaactga |
23481296 |
T |
|
| Q |
122 |
tacagaacctcatgattgtcctcttttgagatgagagggaaatctgtcattagatctgattgaacagtctctatcttcagatcctcttcat |
212 |
Q |
| |
|
|||||||||||| ||||||||||||||||||| | ||||||||||||||||||||||||||| |||||||||| ||||||||||||||||| |
|
|
| T |
23481297 |
tacagaacctcaggattgtcctcttttgagattaaagggaaatctgtcattagatctgattgtacagtctctaccttcagatcctcttcat |
23481387 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 32 - 211
Target Start/End: Original strand, 13526317 - 13526496
Alignment:
| Q |
32 |
accttaagaggggctcctcccattttgtcaagaatagatgcatagctgattatctcaccagtctccttgaagtgagctttgatgaactgatacagaacct |
131 |
Q |
| |
|
||||| ||||| |||||||| || |||| | ||||||||||||||||||| || ||||| || | || |||||||||||||| |||||||||||||| | |
|
|
| T |
13526317 |
accttgagaggtgctcctcctatcttgtaaggaatagatgcatagctgataatttcacccgtatgctgaaagtgagctttgataaactgatacagaactt |
13526416 |
T |
|
| Q |
132 |
catgattgtcctcttttgagatgagagggaaatctgtcattagatctgattgaacagtctctatcttcagatcctcttca |
211 |
Q |
| |
|
|| ||||| ||||| |||||||| |||||||| ||||| ||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
13526417 |
caggattgccctctcttgagatggaggggaaatccgtcataagatctgattgaacagtctctgtcttcagatcctcttca |
13526496 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 32 - 211
Target Start/End: Complemental strand, 21673709 - 21673530
Alignment:
| Q |
32 |
accttaagaggggctcctcccattttgtcaagaatagatgcatagctgattatctcaccagtctccttgaagtgagctttgatgaactgatacagaacct |
131 |
Q |
| |
|
||||| ||||| |||||||| || |||||| ||||||||||| |||||| || || ||||| || |||||||||||||| |||||||| |||||||||| |
|
|
| T |
21673709 |
accttgagaggtgctcctcctatcttgtcaggaatagatgcaaggctgataatttccccagtttcattgaagtgagcttttatgaactggtacagaacct |
21673610 |
T |
|
| Q |
132 |
catgattgtcctcttttgaga-tgagagggaaatctgtcattagatctgattgaacagtctctatcttcagatcctcttca |
211 |
Q |
| |
|
|| |||| ||||||||||||| |||| |||||||| ||||||||||||||||| ||||| |||| ||| |||||||||| |
|
|
| T |
21673609 |
caggattatcctcttttgagattgag-gggaaatccgtcattagatctgattgtacagtttctacaatcatatcctcttca |
21673530 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 101 - 194
Target Start/End: Complemental strand, 19475225 - 19475132
Alignment:
| Q |
101 |
aagtgagctttgatgaactgatacagaacctcatgattgtcctcttttgaga-tgagagggaaatctgtcattagatctgattgaacagtctcta |
194 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||| |||||||| |||| |||| |||||||| ||||||||||||||||||||||| |||| |
|
|
| T |
19475225 |
aagtgagctttgatgaactgatacagaacctcaggattatcctctttggagattgag-gggaaatccgtcattagatctgattgaacagtttcta |
19475132 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0752 (Bit Score: 96; Significance: 3e-47; HSPs: 1)
Name: scaffold0752
Description:
Target: scaffold0752; HSP #1
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 20 - 211
Target Start/End: Original strand, 5040 - 5231
Alignment:
| Q |
20 |
ctctttcctttgaccttaagaggggctcctcccattttgtcaagaatagatgcatagctgattatctcaccagtctccttgaagtgagctttgatgaact |
119 |
Q |
| |
|
||||| ||||| ||||| ||||| |||||||| || |||||| ||||||||||||||||||| || ||||| || | || |||||||||||||| |||| |
|
|
| T |
5040 |
ctcttccctttaaccttgagaggtgctcctcctatcttgtcaggaatagatgcatagctgataatttcacccgtatgctgaaagtgagctttgataaact |
5139 |
T |
|
| Q |
120 |
gatacagaacctcatgattgtcctcttttgagatgagagggaaatctgtcattagatctgattgaacagtctctatcttcagatcctcttca |
211 |
Q |
| |
|
|||||||||||||| ||||||||| | |||||||| |||||||| ||||| ||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
5140 |
gatacagaacctcaggattgtcctatcttgagatgcaggggaaatccgtcataagatctgattgaacagtctctgtcttcagatcctcttca |
5231 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0387 (Bit Score: 94; Significance: 5e-46; HSPs: 1)
Name: scaffold0387
Description:
Target: scaffold0387; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 28 - 189
Target Start/End: Original strand, 10212 - 10373
Alignment:
| Q |
28 |
tttgaccttaagaggggctcctcccattttgtcaagaatagatgcatagctgattatctcaccagtctccttgaagtgagctttgatgaactgatacaga |
127 |
Q |
| |
|
||||| ||| ||||| |||||||||||| || || |||| || |||||||||||||||||||||||||||||||||||||| |||| |||||||||||| |
|
|
| T |
10212 |
tttgatcttgagaggtgctcctcccattgtgccaggaatggacgcatagctgattatctcaccagtctccttgaagtgagcagtgataaactgatacaga |
10311 |
T |
|
| Q |
128 |
acctcatgattgtcctcttttgagatgagagggaaatctgtcattagatctgattgaacagt |
189 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||| |||| || |||||||||||||| |
|
|
| T |
10312 |
acctcgggattgtcctcttttgagatgagagggaaatccttcatcaggtctgattgaacagt |
10373 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0547 (Bit Score: 93; Significance: 2e-45; HSPs: 1)
Name: scaffold0547
Description:
Target: scaffold0547; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 20 - 211
Target Start/End: Original strand, 3740 - 3931
Alignment:
| Q |
20 |
ctctttcctttgaccttaagaggggctcctcccattttgtcaagaatagatgcatagctgattatctcaccagtctccttgaagtgagctttgatgaact |
119 |
Q |
| |
|
||||| ||||| ||||| ||||| |||||||| || |||||| ||||||||||||||||||| || ||||| || | || ||||||||||||||| ||| |
|
|
| T |
3740 |
ctcttccctttaaccttgagaggtgctcctcctatcttgtcaggaatagatgcatagctgatgatttcacccgtattctgaaagtgagctttgatgtact |
3839 |
T |
|
| Q |
120 |
gatacagaacctcatgattgtcctcttttgagat-gagagggaaatctgtcattagatctgattgaacagtctctatcttcagatcctcttca |
211 |
Q |
| |
|
||| |||||||||| ||||||||||||||||||| ||| |||||||| ||||| ||||||||||||||||||| | ||||||||||||||||| |
|
|
| T |
3840 |
gatgcagaacctcaggattgtcctcttttgagatagag-gggaaatccgtcataagatctgattgaacagtctttgtcttcagatcctcttca |
3931 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 93; Significance: 2e-45; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 20 - 211
Target Start/End: Complemental strand, 16816519 - 16816328
Alignment:
| Q |
20 |
ctctttcctttgaccttaagaggggctcctcccattttgtcaagaatagatgcatagctgattatctcaccagtctccttgaagtgagctttgatgaact |
119 |
Q |
| |
|
||||| ||||| ||||| ||||| |||||||| || |||||| ||||||||||||||||||| || ||||| || | || ||||||||||||||| ||| |
|
|
| T |
16816519 |
ctcttccctttaaccttgagaggtgctcctcctatcttgtcaggaatagatgcatagctgatgatttcacccgtattctgaaagtgagctttgatgtact |
16816420 |
T |
|
| Q |
120 |
gatacagaacctcatgattgtcctcttttgagat-gagagggaaatctgtcattagatctgattgaacagtctctatcttcagatcctcttca |
211 |
Q |
| |
|
||| |||||||||| ||||||||||||||||||| ||| |||||||| ||||| ||||||||||||||||||| | ||||||||||||||||| |
|
|
| T |
16816419 |
gatgcagaacctcaggattgtcctcttttgagatagag-gggaaatccgtcataagatctgattgaacagtctttgtcttcagatcctcttca |
16816328 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 20 - 186
Target Start/End: Original strand, 16308231 - 16308397
Alignment:
| Q |
20 |
ctctttcctttgaccttaagaggggctcctcccattttgtcaagaatagatgcatagctgattatctcaccagtctccttgaagtgagctttgatgaact |
119 |
Q |
| |
|
||||| ||||| || || ||||| |||||||| || |||||| ||||||||||| ||||| ||| |||||| || || |||||||||||||||| |
|
|
| T |
16308231 |
ctcttccctttaactttgagaggtgctcctccaatcttgtcaggaatagatgcaacactgatgatcgtaccagtaagctcaaaatgagctttgatgaact |
16308330 |
T |
|
| Q |
120 |
gatacagaacctcatgattgtcctcttttgaga-tgagagggaaatctgtcattagatctgattgaac |
186 |
Q |
| |
|
|||||||||||||| |||| |||||||| |||| |||| |||||||| |||||||||||||||||||| |
|
|
| T |
16308331 |
gatacagaacctcaggattatcctctttagagattgag-gggaaatccgtcattagatctgattgaac |
16308397 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 20 - 194
Target Start/End: Complemental strand, 15204552 - 15204378
Alignment:
| Q |
20 |
ctctttcctttgaccttaagaggggctcctcccattttgtcaagaatagatgcatagctgattatctcaccagtctccttgaagtgagctttgatgaact |
119 |
Q |
| |
|
||||| ||||| || || ||||| |||||||| || |||||| ||||||||||| ||||| ||| |||||| || ||||||| ||||||||||| |
|
|
| T |
15204552 |
ctcttccctttaactttgagaggtgctcctccaatcttgtcaggaatagatgcaacactgatgatcgtaccagtaagctcaaagtgagttttgatgaact |
15204453 |
T |
|
| Q |
120 |
gatacagaacctcatgattgtcctcttttgaga-tgagagggaaatctgtcattagatctgattgaacagtctcta |
194 |
Q |
| |
|
|||||||||||||| |||| |||||||| || |||| |||||||| |||||||| |||||||| ||||| |||| |
|
|
| T |
15204452 |
gatacagaacctcaggattatcctctttaatgattgag-gggaaatccgtcattaggtctgattgtacagtttcta |
15204378 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 90
Target Start/End: Complemental strand, 14713157 - 14713087
Alignment:
| Q |
20 |
ctctttcctttgaccttaagaggggctcctcccattttgtcaagaatagatgcatagctgattatctcacc |
90 |
Q |
| |
|
||||| ||||| ||||| |||||| ||||||| || |||| | ||||||||| |||||| ||||||||||| |
|
|
| T |
14713157 |
ctcttccctttaaccttgagagggcctcctcctatcttgttaggaatagatgaatagcttattatctcacc |
14713087 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0012 (Bit Score: 89; Significance: 5e-43; HSPs: 2)
Name: scaffold0012
Description:
Target: scaffold0012; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 20 - 212
Target Start/End: Complemental strand, 1951 - 1759
Alignment:
| Q |
20 |
ctctttcctttgaccttaagaggggctcctcccattttgtcaagaatagatgcatagctgattatctcaccagtctccttgaagtgagctttgatgaact |
119 |
Q |
| |
|
||||| ||||| ||||| |||||||||||| | ||||||||| | ||||||||| |||||| || ||||| || |||| ||||||||||||||||||| |
|
|
| T |
1951 |
ctcttccctttaaccttgagaggggctccttctattttgtcagggatagatgcaaggctgataatttcacccgtatcctgaaagtgagctttgatgaact |
1852 |
T |
|
| Q |
120 |
gatacagaacctcatgattgtcctcttttgagatgagagggaaatctgtcattagatctgattgaacagtctctatcttcagatcctcttcat |
212 |
Q |
| |
|
||||||||||||| ||||||||||| |||||||| |||||||||||||| |||||| |||||| ||||||| |||| ||||||||||||| |
|
|
| T |
1851 |
aatacagaacctcaggattgtcctctcttgagatggaggggaaatctgtcataagatctaattgaatagtctctgtctttagatcctcttcat |
1759 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0012; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 20 - 211
Target Start/End: Original strand, 23096 - 23287
Alignment:
| Q |
20 |
ctctttcctttgaccttaagaggggctcctcccattttgtcaagaatagatgcatagctgattatctcaccagtctccttgaagtgagctttgatgaact |
119 |
Q |
| |
|
||||| ||||| ||||| ||||| |||||||| || || ||| ||||||||||| |||||| || | ||||| || |||||||||||||| ||||||| |
|
|
| T |
23096 |
ctcttccctttaaccttgagaggtgctcctcctatcttctcaggaatagatgcaaggctgataatttgcccagtttcattgaagtgagcttttatgaact |
23195 |
T |
|
| Q |
120 |
gatacagaacctcatgattgtcctcttttgaga-tgagagggaaatctgtcattagatctgattgaacagtctctatcttcagatcctcttca |
211 |
Q |
| |
|
| |||||||||||| |||| ||||||||||||| |||| |||||||| |||||||| |||||||| ||||| |||| ||| |||||||||| |
|
|
| T |
23196 |
ggtacagaacctcaggattatcctcttttgagattgag-gggaaatccgtcattaggtctgattgtacagtttctacagtcaaatcctcttca |
23287 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0073 (Bit Score: 88; Significance: 2e-42; HSPs: 1)
Name: scaffold0073
Description:
Target: scaffold0073; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 20 - 211
Target Start/End: Original strand, 61599 - 61790
Alignment:
| Q |
20 |
ctctttcctttgaccttaagaggggctcctcccattttgtcaagaatagatgcatagctgattatctcaccagtctccttgaagtgagctttgatgaact |
119 |
Q |
| |
|
||||| ||||| ||||| ||||| |||||||| || |||||| ||||||||||||||||||| || ||||| || | || |||||||||||||| ||| |
|
|
| T |
61599 |
ctcttccctttaaccttgagaggtgctcctcctatcttgtcaggaatagatgcatagctgataatttcacccgtatgctgaaagtgagctttgatatact |
61698 |
T |
|
| Q |
120 |
gatacagaacctcatgattgtcctcttttgagatgagagggaaatctgtcattagatctgattgaacagtctctatcttcagatcctcttca |
211 |
Q |
| |
|
|||||||||||| | ||||||||||| ||||||| ||||||||| ||||| ||||||||||||||||||||| |||||| |||||||||| |
|
|
| T |
61699 |
gatacagaaccttaggattgtcctctcttgagatagaagggaaatccgtcataagatctgattgaacagtctctgtcttcaaatcctcttca |
61790 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 88; Significance: 2e-42; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 20 - 211
Target Start/End: Complemental strand, 22154067 - 22153876
Alignment:
| Q |
20 |
ctctttcctttgaccttaagaggggctcctcccattttgtcaagaatagatgcatagctgattatctcaccagtctccttgaagtgagctttgatgaact |
119 |
Q |
| |
|
||||| ||||| ||||| ||||| |||||||| || |||||| ||||||||||||||||||| || ||||| || | || ||||||||||||||| ||| |
|
|
| T |
22154067 |
ctcttccctttaaccttgagaggtgctcctcctatcttgtcaggaatagatgcatagctgataatttcacccgtatgctgaaagtgagctttgatgtact |
22153968 |
T |
|
| Q |
120 |
gatacagaacctcatgattgtcctcttttgagatgagagggaaatctgtcattagatctgattgaacagtctctatcttcagatcctcttca |
211 |
Q |
| |
|
|||||||||| ||| ||||||||||| ||||||| ||||||||| ||||| ||||||||||| ||||||||| || |||||||||||||| |
|
|
| T |
22153967 |
gatacagaacttcaggattgtcctctcttgagatagaagggaaatccgtcataagatctgattgtacagtctctgtcgtcagatcctcttca |
22153876 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 20 - 211
Target Start/End: Original strand, 23786512 - 23786703
Alignment:
| Q |
20 |
ctctttcctttgaccttaagaggggctcctcccattttgtcaagaatagatgcatagctgattatctcaccagtctccttgaagtgagctttgatgaact |
119 |
Q |
| |
|
||||| ||||| ||||| ||||| |||||||| || |||||| ||||||||||| |||||| || ||||| || | || |||||||||||||| |||| |
|
|
| T |
23786512 |
ctcttccctttaaccttgagaggtgctcctcctatcttgtcaggaatagatgcaaggctgataatttcacccgtatgctgaaagtgagctttgataaact |
23786611 |
T |
|
| Q |
120 |
gatacagaacctcatgattgtcctcttttgagatgagagggaaatctgtcattagatctgattgaacagtctctatcttcagatcctcttca |
211 |
Q |
| |
|
|||||||||||||| ||||||||||| |||||||| |||||||| ||||| ||||||||||| ||||||||| ||||||||| ||||||| |
|
|
| T |
23786612 |
gatacagaacctcaggattgtcctctcttgagatggaggggaaatccgtcataagatctgattggacagtctctgtcttcagattctcttca |
23786703 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 101 - 195
Target Start/End: Original strand, 19227963 - 19228057
Alignment:
| Q |
101 |
aagtgagctttgatgaactgatacagaacctcatgattgtcctcttttgaga-tgagagggaaatctgtcattagatctgattgaacagtctctat |
195 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||| |||||||| |||| |||| |||||||| ||||| |||| |||||||||||| ||||| |
|
|
| T |
19227963 |
aagtgagctttgatgaactgatacagaacctcaggattatcctctttagagattgag-gggaaatccgtcataagatatgattgaacagtttctat |
19228057 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0297 (Bit Score: 80; Significance: 1e-37; HSPs: 1)
Name: scaffold0297
Description:
Target: scaffold0297; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 23 - 206
Target Start/End: Original strand, 19743 - 19926
Alignment:
| Q |
23 |
tttcctttgaccttaagaggggctcctcccattttgtcaagaatagatgcatagctgattatctcaccagtctccttgaagtgagctttgatgaactgat |
122 |
Q |
| |
|
|||||||||||||| |||||||||||||||||| | ||| |||| ||||||||||||||||||||||||||||||||||| |||| || ||||||| |
|
|
| T |
19743 |
tttcctttgaccttgagaggggctcctcccattgtatcaggaatggatgcatagctgattatctcaccagtctccttgaaatgagaagaaataaactgat |
19842 |
T |
|
| Q |
123 |
acagaacctcatgattgtcctcttttgagatgagagggaaatctgtcattagatctgattgaacagtctctatcttcagatcct |
206 |
Q |
| |
|
| ||||||||| || | ||||| ||||||||| | || || || |||| ||||||||||||||||| |||| ||||||||||| |
|
|
| T |
19843 |
atagaacctcaggactatcctcctttgagatggggggaaagtccatcatcagatctgattgaacagtttctaccttcagatcct |
19926 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0132 (Bit Score: 80; Significance: 1e-37; HSPs: 2)
Name: scaffold0132
Description:
Target: scaffold0132; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 23 - 186
Target Start/End: Complemental strand, 22289 - 22126
Alignment:
| Q |
23 |
tttcctttgaccttaagaggggctcctcccattttgtcaagaatagatgcatagctgattatctcaccagtctccttgaagtgagctttgatgaactgat |
122 |
Q |
| |
|
||||| |||||||| |||||||||||||||||| ||||| |||| |||||||||||||||||||||||||| | |||||||||||| ||||| |||| |
|
|
| T |
22289 |
tttcccttgaccttgagaggggctcctcccattgtgtcaggaatggatgcatagctgattatctcaccagtattcttgaagtgagcagaaatgaaatgat |
22190 |
T |
|
| Q |
123 |
acagaacctcatgattgtcctcttttgagatgagagggaaatctgtcattagatctgattgaac |
186 |
Q |
| |
|
| ||||||||| |||| ||||| ||||||||| |||||||||| ||||| || ||| ||||||| |
|
|
| T |
22189 |
atagaacctcaggattatcctcctttgagatgggagggaaatccgtcatcaggtctaattgaac |
22126 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0132; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 23 - 186
Target Start/End: Complemental strand, 35490 - 35327
Alignment:
| Q |
23 |
tttcctttgaccttaagaggggctcctcccattttgtcaagaatagatgcatagctgattatctcaccagtctccttgaagtgagctttgatgaactgat |
122 |
Q |
| |
|
||||| |||||||| |||||||||||||||||| ||||| |||| |||||||||||||||||||||||||| | |||||||||||| ||||| |||| |
|
|
| T |
35490 |
tttcccttgaccttgagaggggctcctcccattgtgtcaggaatggatgcatagctgattatctcaccagtattcttgaagtgagcagaaatgaaatgat |
35391 |
T |
|
| Q |
123 |
acagaacctcatgattgtcctcttttgagatgagagggaaatctgtcattagatctgattgaac |
186 |
Q |
| |
|
| ||||||||| |||| ||||| ||||||||| |||||||||| ||||| || ||| ||||||| |
|
|
| T |
35390 |
atagaacctcaggattatcctcctttgagatgggagggaaatccgtcatcaggtctaattgaac |
35327 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0739 (Bit Score: 76; Significance: 3e-35; HSPs: 1)
Name: scaffold0739
Description:
Target: scaffold0739; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 32 - 211
Target Start/End: Original strand, 5118 - 5297
Alignment:
| Q |
32 |
accttaagaggggctcctcccattttgtcaagaatagatgcatagctgattatctcaccagtctccttgaagtgagctttgatgaactgatacagaacct |
131 |
Q |
| |
|
||||| ||||| ||||||||||| |||||| |||||||||| |||||| || || ||||| || |||||||||||||| |||||||| |||||||||| |
|
|
| T |
5118 |
accttgagaggtgctcctcccatcttgtcaggaatagatgccaggctgataatttccccagtttcattgaagtgagcttttatgaactggtacagaacct |
5217 |
T |
|
| Q |
132 |
catgattgtcctcttttgagatgagagggaaatctgtcattagatctgattgaacagtctctatcttcagatcctcttca |
211 |
Q |
| |
|
|| |||| |||||||||||||| | ||||||||||||||||||||| |||| ||||| |||| ||| |||||||||| |
|
|
| T |
5218 |
caggattatcctcttttgagattaaggggaaatctgtcattagatctcattgtacagtttctacagtcatatcctcttca |
5297 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0269 (Bit Score: 71; Significance: 3e-32; HSPs: 1)
Name: scaffold0269
Description:
Target: scaffold0269; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 23 - 189
Target Start/End: Original strand, 10194 - 10360
Alignment:
| Q |
23 |
tttcctttgaccttaagaggggctcctcccattttgtcaagaatagatgcatagctgattatctcaccagtctccttgaagtgagctttgatgaactgat |
122 |
Q |
| |
|
||||| |||||||| || || ||||||||||||||||| | ||||||||||| ||||||||||| ||||| | |||||||||||| | |||||| || | |
|
|
| T |
10194 |
tttcccttgaccttgaggggtcctcctcccattttgtcagggatagatgcataactgattatctccccagtgttcttgaagtgagcatagatgaattggt |
10293 |
T |
|
| Q |
123 |
acagaacctcatgattgtcctcttttgagatgagagggaaatctgtcattagatctgattgaacagt |
189 |
Q |
| |
|
||||||| ||| |||| ||||| ||||||||| | || ||||| |||||||||||| |||||||||| |
|
|
| T |
10294 |
acagaacttcaggattttcctcctttgagatggggggaaaatcggtcattagatcttattgaacagt |
10360 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0040 (Bit Score: 71; Significance: 3e-32; HSPs: 1)
Name: scaffold0040
Description:
Target: scaffold0040; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 32 - 194
Target Start/End: Original strand, 72675 - 72837
Alignment:
| Q |
32 |
accttaagaggggctcctcccattttgtcaagaatagatgcatagctgattatctcaccagtctccttgaagtgagctttgatgaactgatacagaacct |
131 |
Q |
| |
|
||||| ||||| |||||||| || |||||| || |||||||| |||||| || | ||||| || |||||||||||||| |||||||| |||||||||| |
|
|
| T |
72675 |
accttgagaggtgctcctcctatcttgtcaggagtagatgcaaggctgataattttcccagtttcattgaagtgagcttttatgaactggtacagaacct |
72774 |
T |
|
| Q |
132 |
catgattgtcctcttttgagatgagagggaaatctgtcattagatctgattgaacagtctcta |
194 |
Q |
| |
|
|| |||| |||||||||||||| | |||||||||||||||||||||||||| ||||| |||| |
|
|
| T |
72775 |
caggattatcctcttttgagattaaggggaaatctgtcattagatctgattgtacagtttcta |
72837 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0738 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: scaffold0738
Description:
Target: scaffold0738; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 26 - 211
Target Start/End: Complemental strand, 1774 - 1589
Alignment:
| Q |
26 |
cctttgaccttaagaggggctcctcccattttgtcaagaatagatgcatagctgattatctcaccagtctccttgaagtgagctttgatgaactgataca |
125 |
Q |
| |
|
||||| ||||| ||||| |||||||| || |||||| ||||||||||| |||||| || ||||| || | || ||||||||||||||| ||| ||||| |
|
|
| T |
1774 |
cctttaaccttgagaggtgctcctcctatcttgtcaggaatagatgcaaggctgataatttcacccgtatgctgaaagtgagctttgatgtactaataca |
1675 |
T |
|
| Q |
126 |
gaacctcatgattgtcctcttttgagatgagagggaaatctgtcattagatctgattgaacagtctctatcttcagatcctcttca |
211 |
Q |
| |
|
||| ||| |||| |||||| ||||||| | |||||||| ||||| ||||||||||| ||||||||| ||||||||||||||||| |
|
|
| T |
1674 |
taacttcaggattatcctctcttgagataaaagggaaattcgtcataagatctgattgtacagtctctgtcttcagatcctcttca |
1589 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0211 (Bit Score: 64; Significance: 4e-28; HSPs: 1)
Name: scaffold0211
Description:
Target: scaffold0211; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 23 - 206
Target Start/End: Complemental strand, 7655 - 7472
Alignment:
| Q |
23 |
tttcctttgaccttaagaggggctcctcccattttgtcaagaatagatgcatagctgattatctcaccagtctccttgaagtgagctttgatgaactgat |
122 |
Q |
| |
|
||||| |||||||| |||||||||||| ||||| ||||| |||| |||||||||||||||||||| || | || ||||||||||| ||| ||||||| |
|
|
| T |
7655 |
tttcccttgaccttgagaggggctccttccattgtgtcaggaatggatgcatagctgattatctcctcaatttctttgaagtgagcagagataaactgat |
7556 |
T |
|
| Q |
123 |
acagaacctcatgattgtcctcttttgagatgagagggaaatctgtcattagatctgattgaacagtctctatcttcagatcct |
206 |
Q |
| |
|
||| ||||||| |||| || || || |||||||| |||||||| |||| || ||||||| |||||| ||| ||||||||||| |
|
|
| T |
7555 |
acataacctcaggattatcttccttcgagatgagggggaaatccttcatcaggtctgattcaacagtttcttccttcagatcct |
7472 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1638 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: scaffold1638
Description:
Target: scaffold1638; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 101 - 194
Target Start/End: Original strand, 1011 - 1104
Alignment:
| Q |
101 |
aagtgagctttgatgaactgatacagaacctcatgattgtcctcttttgaga-tgagagggaaatctgtcattagatctgattgaacagtctcta |
194 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||| |||| |||| |||||||| ||||||||||||||||||||||| |||| |
|
|
| T |
1011 |
aagtgagctttgatgaactgatacagaacctcatgattatcctctttagagattgag-gggaaatccgtcattagatctgattgaacagtttcta |
1104 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0016 (Bit Score: 56; Significance: 2e-23; HSPs: 1)
Name: scaffold0016
Description:
Target: scaffold0016; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 20 - 194
Target Start/End: Original strand, 195043 - 195217
Alignment:
| Q |
20 |
ctctttcctttgaccttaagaggggctcctcccattttgtcaagaatagatgcatagctgattatctcaccagtctccttgaagtgagctttgatgaact |
119 |
Q |
| |
|
||||| ||||| || || ||||| |||||||| || |||||| ||||||||||| ||||| ||| |||||| || ||||||||||||||||||| |
|
|
| T |
195043 |
ctcttccctttaactttgagaggtgctcctccaatcttgtcaggaatagatgcaacactgatgatcgtaccagtaagctcaaagtgagctttgatgaact |
195142 |
T |
|
| Q |
120 |
gatacagaacctcatgattgtcctcttttgaga-tgagagggaaatctgtcattagatctgattgaacagtctcta |
194 |
Q |
| |
|
|||||||| ||||| |||| |||||||| |||| |||| ||||||| ||||||||||||||||||||||| |||| |
|
|
| T |
195143 |
gatacagatcctcaggattatcctctttagagattgag-gggaaattcgtcattagatctgattgaacagtttcta |
195217 |
T |
|
Back To:
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Target: scaffold0544 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: scaffold0544
Description:
Target: scaffold0544; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 126 - 211
Target Start/End: Complemental strand, 7050 - 6965
Alignment:
| Q |
126 |
gaacctcatgattgtcctcttttgagatgagagggaaatctgtcattagatctgattgaacagtctctatcttcagatcctcttca |
211 |
Q |
| |
|
|||||||| ||||||||||| |||||||| |||||||||||||| ||||||||||||||||||||| ||||||||| ||||||| |
|
|
| T |
7050 |
gaacctcaggattgtcctctcttgagatggaggggaaatctgtcataagatctgattgaacagtctctgtcttcagattctcttca |
6965 |
T |
|
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Target: scaffold0474 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: scaffold0474
Description:
Target: scaffold0474; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 101 - 195
Target Start/End: Complemental strand, 2678 - 2584
Alignment:
| Q |
101 |
aagtgagctttgatgaactgatacagaacctcatgattgtcctcttttgaga-tgagagggaaatctgtcattagatctgattgaacagtctctat |
195 |
Q |
| |
|
||||||||||||||||||| ||||||||||||| |||| |||||||| |||| |||| |||||||| ||||| ||||||||||||||||| ||||| |
|
|
| T |
2678 |
aagtgagctttgatgaacttatacagaacctcaggattatcctctttagagattgag-gggaaatccgtcataagatctgattgaacagtttctat |
2584 |
T |
|
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Target: scaffold0194 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: scaffold0194
Description:
Target: scaffold0194; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 101 - 195
Target Start/End: Complemental strand, 1454 - 1360
Alignment:
| Q |
101 |
aagtgagctttgatgaactgatacagaacctcatgattgtcctcttttgaga-tgagagggaaatctgtcattagatctgattgaacagtctctat |
195 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||| |||||||| |||| |||| |||||||| ||||| |||||| |||||||||| ||||| |
|
|
| T |
1454 |
aagtgagctttgatgaactgatacagaacctcaggattatcctctttagagattgag-gggaaatccgtcataagatcttattgaacagtttctat |
1360 |
T |
|
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Target: chr7 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 101 - 195
Target Start/End: Complemental strand, 15885562 - 15885468
Alignment:
| Q |
101 |
aagtgagctttgatgaactgatacagaacctcatgattgtcctcttttgaga-tgagagggaaatctgtcattagatctgattgaacagtctctat |
195 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||| |||||||| |||| |||| |||||||| ||||| |||||| |||||||||| ||||| |
|
|
| T |
15885562 |
aagtgagctttgatgaactgatacagaacctcaggattatcctctttagagattgag-gggaaatccgtcataagatctaattgaacagtttctat |
15885468 |
T |
|
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