View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17793_low_108 (Length: 222)
Name: NF17793_low_108
Description: NF17793
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17793_low_108 |
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| [»] scaffold0566 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 149; Significance: 7e-79; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 149; E-Value: 7e-79
Query Start/End: Original strand, 14 - 173
Target Start/End: Original strand, 7463585 - 7463745
Alignment:
| Q |
14 |
agtgagatgaaagatggagagagtgattcaaatacagacaatcaacttgaattagaaggaaatgataaaataaataaagatatgtacaaacaattataac |
113 |
Q |
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| T |
7463585 |
agtgagatgaaagatggagagagtgattcaaatacagacaatcaacttgaattagaaggaaatgataaaataaataaagatatgtacaaacaattataag |
7463684 |
T |
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| Q |
114 |
aatcagggaatgaattagtgtaagtggta-ccctcatttcatgttgaaatttccaatttaa |
173 |
Q |
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| T |
7463685 |
aatcagggaatgaattagtgtaagtggtacccctcatttcatgttgaaatttccaatttaa |
7463745 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0566 (Bit Score: 133; Significance: 3e-69; HSPs: 1)
Name: scaffold0566
Description:
Target: scaffold0566; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 14 - 173
Target Start/End: Complemental strand, 5607 - 5447
Alignment:
| Q |
14 |
agtgagatgaaagatggagagagtgattcaaatacagacaatcaacttgaattagaaggaaatgataaaataaataaagatatgtacaaacaattataac |
113 |
Q |
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| T |
5607 |
agtgagatgaaatatggagagagtgattcaaatacaaacaatcaacttgaattaaaaggaaatgataaaataaataaagatatgtacaaacaattataag |
5508 |
T |
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| Q |
114 |
aatcagggaatgaattagtgtaagtggta-ccctcatttcatgttgaaatttccaatttaa |
173 |
Q |
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| T |
5507 |
aatcagggaatgaattagtgtaagtggtacccctcaattcatgttgaaatttccaatttaa |
5447 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 120; Significance: 1e-61; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 120; E-Value: 1e-61
Query Start/End: Original strand, 14 - 173
Target Start/End: Original strand, 21126144 - 21126308
Alignment:
| Q |
14 |
agtgagatgaaagatggagagagtgattcaaatacagacaatcaacttgaattagaaggaaatgataaaataaataaagatatg----tacaaacaatta |
109 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||| ||||| |
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| T |
21126144 |
agtgagatgaaagatggagagagtgattcaaatacagacaatcaacttgaattagaaggaaatgataaaataaataaagatatgtcaatgaaaagaatta |
21126243 |
T |
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| Q |
110 |
taacaatcagggaatgaattagtgtaagtggta-ccctcatttcatgttgaaatttccaatttaa |
173 |
Q |
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| T |
21126244 |
taagaatcaaggaatgaattagtgtaagtggtacccctcatttcatgttgaaatttccaatttaa |
21126308 |
T |
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