View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17793_low_109 (Length: 222)
Name: NF17793_low_109
Description: NF17793
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17793_low_109 |
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Alignment Details
Target: chr7 (Bit Score: 187; Significance: 1e-101; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 18 - 208
Target Start/End: Complemental strand, 45101505 - 45101315
Alignment:
| Q |
18 |
aggaggatcagggtcagtttcaggagtaacattcaataatattcacatgattagtgtaagaaatccaatcataattgaccaatactattgcctaaccaaa |
117 |
Q |
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| T |
45101505 |
aggaggatcagggtcagtttcaggagtaacattcaataatattcacatgattagtgtaagaaatccaatcataattgaccaatactattgcctaaccaaa |
45101406 |
T |
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| Q |
118 |
gattgcaccaacaaaacctcagcagtatctgtatcaaacattctttacacaaacatcaaaggaacttatgatataaaaagccctcctatgc |
208 |
Q |
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| T |
45101405 |
gattgtaccaacaaaacctcagcagtatctgtatcaaacattctttacacaaacatcaaaggaacttatgatataaaaagccctcctatgc |
45101315 |
T |
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Target: chr1 (Bit Score: 71; Significance: 3e-32; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 22 - 208
Target Start/End: Original strand, 38662293 - 38662479
Alignment:
| Q |
22 |
ggatcagggtcagtttcaggagtaacattcaataatattcacatgattagtgtaagaaatccaatcataattgaccaatactattgcctaaccaaagatt |
121 |
Q |
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|||||||| ||||| |||||||||||||||| ||||||||||||| || |||| |||||| || ||||||||||||| || ||||| | ||||||| |
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| T |
38662293 |
ggatcaggatcagtatcaggagtaacattcagtaatattcacatggatacagtaaaaaatcctattataattgaccaattttactgcctcagtaaagatt |
38662392 |
T |
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| Q |
122 |
gcaccaacaaaacctcagcagtatctgtatcaaacattctttacacaaacatcaaaggaacttatgatataaaaagccctcctatgc |
208 |
Q |
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| T |
38662393 |
gcagcaacaaaacctctgcagtatttgtatcagatatagtttacacaagcataaagggaacttatgatataagacaccctcctatgc |
38662479 |
T |
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