View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17793_low_116 (Length: 214)
Name: NF17793_low_116
Description: NF17793
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17793_low_116 |
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Alignment Details
Target: chr3 (Bit Score: 97; Significance: 7e-48; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 97; E-Value: 7e-48
Query Start/End: Original strand, 81 - 193
Target Start/End: Original strand, 26175596 - 26175707
Alignment:
| Q |
81 |
tgcttgacttgattatttactggtagaggaatcttgtactttatttcattgttgagaataaggtatagatctaccagaggatagttcgtttacacatttt |
180 |
Q |
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| T |
26175596 |
tgcttgacttgattatttac-ggtagaggaatcttgtactttatttcattgttgagaataaggtacagatctaccagaggatagttcgtttacacatttt |
26175694 |
T |
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| Q |
181 |
tattttgattctt |
193 |
Q |
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|||||||||||| |
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| T |
26175695 |
gattttgattctt |
26175707 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 89; E-Value: 4e-43
Query Start/End: Original strand, 81 - 193
Target Start/End: Original strand, 26125543 - 26125654
Alignment:
| Q |
81 |
tgcttgacttgattatttactggtagaggaatcttgtactttatttcattgttgagaataaggtatagatctaccagaggatagttcgtttacacatttt |
180 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||| |
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| T |
26125543 |
tgcttgacttgattatttactggtagaggaatgttgtactttatttcattgttgagaataaggtatagatctatcaga-tatagttcgtttacacatttt |
26125641 |
T |
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| Q |
181 |
tattttgattctt |
193 |
Q |
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|||||||||||| |
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| T |
26125642 |
gattttgattctt |
26125654 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 77; E-Value: 6e-36
Query Start/End: Original strand, 3 - 91
Target Start/End: Original strand, 26175461 - 26175549
Alignment:
| Q |
3 |
tgcatagtttgctgcagatatacctgcaagtatgttcgcaggaaaaactctacatacagtgacttaccgaatatttcctgcttgacttg |
91 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
26175461 |
tgcatagtttgctgcagaagtacctgcaagtatgttcgcaggaaaaactctacaaacagtgacttaccgaatatttcctgcttgacttg |
26175549 |
T |
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