View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17793_low_119 (Length: 206)
Name: NF17793_low_119
Description: NF17793
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17793_low_119 |
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Alignment Details
Target: chr7 (Bit Score: 163; Significance: 3e-87; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 19 - 193
Target Start/End: Original strand, 21124006 - 21124180
Alignment:
| Q |
19 |
cataatccatggttaattttctttgcataaccataccataatcataagtggaaaaagtgtaattatcagatgatatgaactttccaagagaatccaacaa |
118 |
Q |
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| T |
21124006 |
cataatccatggttaattttctttgcataaccataccataatcataagtggaaaaagtgtaattatcagatgatatgaactttccaagagaatccaacaa |
21124105 |
T |
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| Q |
119 |
agcaattctggtactgttgtaattggatcttccaacttgccaacttagtaacaaagaaggtggccaatctgtgct |
193 |
Q |
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| T |
21124106 |
agcaattatggtactattgtaattggatcttccaacttgccaacttagtaacaaagaaggtggccaatatgtgct |
21124180 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 117; E-Value: 8e-60
Query Start/End: Original strand, 22 - 186
Target Start/End: Original strand, 18659737 - 18659901
Alignment:
| Q |
22 |
aatccatggttaattttctttgcataaccataccataatcataagtggaaaaagtgtaattatcagatgatatgaactttccaagagaatccaacaaagc |
121 |
Q |
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| T |
18659737 |
aatccatggttaattttctttgcatgaccataccataatcataagtggaaaaaatgtaattatcagatgatatgaactttccaagagaatccaacaatgc |
18659836 |
T |
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| Q |
122 |
aattctggtactgttgtaattggatcttccaacttgccaacttagtaacaaagaaggtggccaat |
186 |
Q |
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| T |
18659837 |
aattctactactattgtaattggatcttccagcttgccagcttaacaataaagcaggtggccaat |
18659901 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 112; E-Value: 8e-57
Query Start/End: Original strand, 22 - 193
Target Start/End: Original strand, 21112615 - 21112786
Alignment:
| Q |
22 |
aatccatggttaattttctttgcataaccataccataatcataagtggaaaaagtgtaattatcagatgatatgaactttccaagagaatccaacaaagc |
121 |
Q |
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| T |
21112615 |
aatccaaggttaatcttctttgcataaccataccataatcatatgtggaaaaaaagtaattatcagatgatatgaactttccaagagaatccaacaaagc |
21112714 |
T |
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| Q |
122 |
aattctggtactgttgtaattggatcttccaacttgccaacttagtaacaaagaaggtggccaatctgtgct |
193 |
Q |
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| T |
21112715 |
aattctagtactattgtaattggtccttccagcttgccaacttaacaaaaaagatggtggccaatatgtgct |
21112786 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 37 - 193
Target Start/End: Original strand, 21131590 - 21131746
Alignment:
| Q |
37 |
ttctttgcataaccataccataatcataagtggaaaaagtgtaattatcagatgatatgaactttccaagagaatccaacaaagcaattctggtactgtt |
136 |
Q |
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| T |
21131590 |
ttctttgcataaccatgccataatcatatgtggaaaaagtgtaattatcagatgaaatgaactttccaagagaatctaagaaagcaattctactactatt |
21131689 |
T |
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| Q |
137 |
gtaattggatcttccaacttgccaacttagtaacaaagaaggtggccaatctgtgct |
193 |
Q |
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| T |
21131690 |
gtaattgaaccttccagcttcccaacttaacaaccaaggtggtggccaatatgtgct |
21131746 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 37 - 166
Target Start/End: Complemental strand, 21097622 - 21097493
Alignment:
| Q |
37 |
ttctttgcataaccataccataatcataagtggaaaaagtgtaattatcagatgatatgaactttccaagagaatccaacaaagcaattctggtactgtt |
136 |
Q |
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| T |
21097622 |
ttctttgcagaacagttccataatcagaagttgaaaaagtgaaattatctgatgaatggaaactaccaaaagaatccaacactgcatttctgctactatt |
21097523 |
T |
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| Q |
137 |
gtaattggatcttccaacttgccaacttag |
166 |
Q |
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| T |
21097522 |
gaaattagatctgccaacatcccaacttag |
21097493 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 84; Significance: 4e-40; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 22 - 165
Target Start/End: Complemental strand, 39131161 - 39131018
Alignment:
| Q |
22 |
aatccatggttaattttctttgcataaccataccataatcataagtggaaaaagtgtaattatcagatgatatgaactttccaagagaatccaacaaagc |
121 |
Q |
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|||||||||||||| |||||||||||||| |||| |||||||| ||||||||| |||||||||||||||| || ||||||||| |||||||||||||||| |
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| T |
39131161 |
aatccatggttaatcttctttgcataaccgtaccgtaatcatatgtggaaaaaatgtaattatcagatgaaataaactttccatgagaatccaacaaagc |
39131062 |
T |
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| Q |
122 |
aattctggtactgttgtaattggatcttccaacttgccaactta |
165 |
Q |
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| T |
39131061 |
aattctactactattataattgaaccttccagcttgccaactta |
39131018 |
T |
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