View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17793_low_12 (Length: 525)
Name: NF17793_low_12
Description: NF17793
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17793_low_12 |
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Alignment Details
Target: chr5 (Bit Score: 378; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 12 - 507
Target Start/End: Complemental strand, 8494656 - 8494143
Alignment:
| Q |
12 |
ataattctcaatcgaggctaataaagtatatgatctatcatctattctttgtggcttagacttcgcacccacattacaacgccaatgatctagtaaaagg |
111 |
Q |
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| T |
8494656 |
ataattctcaatcgaggctaataaagtatatgatctatcatctattctttgtggcttagacttcgcacccacattacatcgccaatgatctagtaaaagg |
8494557 |
T |
|
| Q |
112 |
accaatagatggtggaacttgttgttatcgttacaaaggaggatgtggtacatgtaagtattttgatgccaaagtc--------aatgagtgacaggata |
203 |
Q |
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| T |
8494556 |
accaatagatggtggaacttgttgttgtcgttacaaaggagggtgtggtacatgtaagtattttgatcccaaagtcaacgagagaatgagtgacaggata |
8494457 |
T |
|
| Q |
204 |
catgtattgaaaaaggaattacgtacctttgtaaagtattggttacccgagttatgatgaagagatgaccatgagagagtgatggtgcatcattgatgag |
303 |
Q |
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| T |
8494456 |
catgtattgaaaaaggaattacgtacctttgtaaagtattggttacccgagttatgatgaagaaatgaccatgagagagtgatggtgcatcattgatgag |
8494357 |
T |
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| Q |
304 |
atgatttcttcctttaaacgggttggacctaagtctactccnnnnnnnncttaaatgcgtatttttggcatcatat----------tccataatacgtaa |
393 |
Q |
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| T |
8494356 |
atgatttcttcctttaaacgggttggacctaggtcgactccaaaaaaaacttaaatgcatatttttgtcatcatattccataatactccataatacgtaa |
8494257 |
T |
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| Q |
394 |
aaattatgcagagaaagaaaacaaatataaaggcggacctatgacaattgaagaaactattattttttggcatcatattccataactgtcgctctagaac |
493 |
Q |
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| T |
8494256 |
aaattatgcagagaaagaaaacaaatataaaggcagacctatggcaattgaagaaactattattttttggcatcatattccataactgtcactctagaac |
8494157 |
T |
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| Q |
494 |
atgcaacaataagt |
507 |
Q |
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| T |
8494156 |
atgcaacaataagt |
8494143 |
T |
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