View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17793_low_17 (Length: 506)
Name: NF17793_low_17
Description: NF17793
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17793_low_17 |
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Alignment Details
Target: chr1 (Bit Score: 320; Significance: 1e-180; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 36 - 383
Target Start/End: Complemental strand, 36130262 - 36129915
Alignment:
| Q |
36 |
caaatcaattagaaaatagtattctctaattttcaaataatacccacaaaattatttttctcgttaaccgtatgatttgtgagagtgatgagacttgttg |
135 |
Q |
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| T |
36130262 |
caaataaattagaaaatagcattctctaattttcaaataatacccacaaaattatttttctctttaaccatatgatttgtgagagtgatgagacttgttg |
36130163 |
T |
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| Q |
136 |
aagctacctaaatttcttgatcagaaggtaatgtaatactatacgataaagatgagtttggattttatttaaaaatggaaaaaagagtgaaatgcaatga |
235 |
Q |
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| T |
36130162 |
aagctacctaaatttcttgatcagaaggtcatgtaatactatacgataaagatgagtttggattttatttaaaaatggaaaaaagagtgaaatgcaatga |
36130063 |
T |
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| Q |
236 |
atatagcctttatttgtaacgtggtttgattgacttgttcaaggaagcacattttatttgtaacgtggttttccagatacaaaatttgacatcaaatttg |
335 |
Q |
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| T |
36130062 |
atatagcctttatttgtaacgtggtttgattgacttgttcaagaaaacacattttatttgtaacgtggttttccagatacaaaatttgacatcaaatttg |
36129963 |
T |
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| Q |
336 |
taggtatatttttgccattaaaaaattgtgtatattatgattgccaag |
383 |
Q |
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| T |
36129962 |
taggtatatttttgccattaaaaaattgtgtatattatgattgccaag |
36129915 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 440 - 506
Target Start/End: Complemental strand, 36129857 - 36129792
Alignment:
| Q |
440 |
caacaccacacacatctgaattatatattttataggtatcgaaatagtgtctaacttttgtattaaa |
506 |
Q |
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| T |
36129857 |
caacaccacacacatctgagttatattttatat-ggtatcgaaatagtgtctaatttttatattaaa |
36129792 |
T |
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