View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17793_low_18 (Length: 489)

Name: NF17793_low_18

Description: NF17793

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF17793_low_18

[»] chr8 (5 HSPs)

Alignment Details

Target: chr8 (Bit Score: 214; Significance: 1e-117; HSPs: 5)

Name: chr8

Description:

Target: chr8; HSP #1

Raw Score: 214; E-Value: 1e-117

Query Start/End: Original strand, 257 - 489

Target Start/End: Original strand, 13202210 - 13202447

Alignment:

Q	257	gctgttacattattcaattcatgtatgaactcaacaccttacattatttgatttttgaagtttggcaaccatgaaattactacaatcatacaaaac----	352	Q
		\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	13202210	gctgtcacattattcaattcatgtatgaactcaacaccttacattatttgatttttgaagtttggcaaccatgaaattactacaatcatacaaaacccaa	13202309	T

Q	353	-acaaacactaacataaaacaagacttgatagaatagggcaattaatctaatctaaattaataccgaccaactatgataaagtcttcatcatcaagaact	451	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	13202310	cacaaacactaacataaaacaagacttgatagaatagggcaattaatctaatctaaattaataccgaccaactatgataaagtcttcatcatcaagaact	13202409	T

Q	452	tcaacatccttttctccaacaaaatgatctcttccaat	489	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	13202410	tcaacatccttttctccaacaaaatgatctcttccaat	13202447	T

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Target: chr8; HSP #2

Raw Score: 85; E-Value: 3e-40

Query Start/End: Original strand, 2 - 125

Target Start/End: Original strand, 13201954 - 13202077

Alignment:

Q	2	tttaaagaaacaaaattattttatannnnnnnnngaagaaagaagaagcaaaattatgttatattaagaatcttttttgaaacaatttataggataacga	101	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	13201954	tttaaagaaacaaaattatgttatatttttttttgaagaaagaagaagcaaaattatgttatatgaagaatcttttttgaaacaatttataggataacga	13202053	T

Q	102	aagatatacaaagaatataagtat	125	Q
		\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|
T	13202054	aagatatacaaataatataagtat	13202077	T

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Target: chr8; HSP #3

Raw Score: 46; E-Value: 5e-17

Query Start/End: Original strand, 401 - 470

Target Start/End: Original strand, 13179899 - 13179968

Alignment:

Q	401	aatctaaattaataccgaccaactatgataaagtcttcatcatcaagaacttcaacatccttttctccaa	470	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\| \|\|\|\|\| \|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|
T	13179899	aatctaaattaatatcgaccaactatgataaaatcatcatcctcaagaacttgaacatctttttctccaa	13179968	T

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Target: chr8; HSP #4

Raw Score: 45; E-Value: 2e-16

Query Start/End: Original strand, 401 - 477

Target Start/End: Original strand, 13188161 - 13188237

Alignment:

Q	401	aatctaaattaataccgaccaactatgataaagtcttcatcatcaagaacttcaacatccttttctccaacaaaatg	477	Q
		\|\|\|\|\|\|\|\| \|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\| \|\|\|\|\| \|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|
T	13188161	aatctaaactaatatcgaccaactatgataaaatcatcatcctcaagaacttgaacatctttttctccaacgaaatg	13188237	T

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Target: chr8; HSP #5

Raw Score: 38; E-Value: 0.000000000003

Query Start/End: Original strand, 428 - 489

Target Start/End: Original strand, 13191312 - 13191373

Alignment:

Q	428	ataaagtcttcatcatcaagaacttcaacatccttttctccaacaaaatgatctcttccaat	489	Q
		\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\| \|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\| \|\|\|\|\|
T	13191312	ataaagtcatcatcatcaagaacttgaacatctttttcaccaacaaaatgctctctaccaat	13191373	T

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