View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17793_low_2 (Length: 852)
Name: NF17793_low_2
Description: NF17793
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17793_low_2 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 797; Significance: 0; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 797; E-Value: 0
Query Start/End: Original strand, 14 - 834
Target Start/End: Original strand, 31182581 - 31183401
Alignment:
| Q |
14 |
cataggcaacatgagtaaattaaatttacttatcctttgtaataacacaaaggtttctggtccaattccacactccttgtggaacatgtctagcttgaac |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31182581 |
cataggcaacatgagtaaattaaatttacttatcctttgtaataacacaaaggtttctggtccaattccacactccttgtggaacatgtctagcttgaac |
31182680 |
T |
|
| Q |
114 |
attatcttactttataacatgagtctttctggttcaatccctgaatctgtcgaaaacttgattaatgtgaatcagcttgcacttgatcgcaatcgccttt |
213 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
31182681 |
actatcttactttataacatgagtctttctggttcaatccctgaatctgtcgaaaacttgattaatgtgaatgagcttgcacttgatcgcaatcgccttt |
31182780 |
T |
|
| Q |
214 |
ctggaaccattccttccacaattggaaacttgaaaaatctccaatatttgattttgggattcaatcatttttctggatcaattcctgcctctataggaaa |
313 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31182781 |
ctggaaccattccttccacaattggaaacttgaaaaatctccaatatttgattttgggattcaatcatttttctggatcaattcctgcctctataggaaa |
31182880 |
T |
|
| Q |
314 |
tttgatcaatttggtaatccttagtctccaagaaaacaatctcactggaacaattccagctacaattggaaatttgaagctgctcagtgtctttgaatta |
413 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31182881 |
tttgatcaatttggtaatccttagtctccaagaaaacaatctcactggaacaattccagctacaattggaaatttgaagctgctcagtgtctttgaatta |
31182980 |
T |
|
| Q |
414 |
actaaaaataaacttcatggtagaattccaaatgaactcaataacaataccaattggtattcctttcttgtgtctgagaatgattttgttggccatttgc |
513 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31182981 |
actaaaaataaacttcatggtagaattccaaatgaactcaataacaacaccaattggtattcctttcttgtgtctgagaatgattttgttggccatttgc |
31183080 |
T |
|
| Q |
514 |
cgtctcaaatatgttctggtggaaaattaacgttcttaaatgctgataatgaccgtttcactggtccaataccaacaagtttgaaaaactgctctagcat |
613 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
31183081 |
cgtctcaaatatgttctggtggaaaattaacgttcttaaatgctgataataaccgtttcactggtccaataccaacaagtttgaaaaactgttctagcat |
31183180 |
T |
|
| Q |
614 |
ccgaaggatcagaattgaggcaaatcaaatagaaggtgatatagcacaagtttttggtgtgtatccaaatttgcaatactttgaggcaagtgataataaa |
713 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31183181 |
ccgaaggatcagaattgaggcaaatcaaatagaaggtgatatagcacaagtttttggtgtgtatccaaatttgcaatactttgaggcaagtgataataaa |
31183280 |
T |
|
| Q |
714 |
tttcatggacaaatttcaccaaactggggaaagtgtcttaatattgagaatttcaagatatccaacaataatatttctggtgctataccattagaactta |
813 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31183281 |
tttcatggacaaatttcaccaaactggggaaagtgtcttaatattgagaatttcaagatatccaacaataatatttctggtgctataccattagaactta |
31183380 |
T |
|
| Q |
814 |
ctcgtttaaccaagctaggta |
834 |
Q |
| |
|
||||||| ||||||||||||| |
|
|
| T |
31183381 |
ctcgtttgaccaagctaggta |
31183401 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 438; E-Value: 0
Query Start/End: Original strand, 14 - 834
Target Start/End: Original strand, 31138866 - 31139686
Alignment:
| Q |
14 |
cataggcaacatgagtaaattaaatttacttatcctttgtaataacacaaaggtttctggtccaattccacactccttgtggaacatgtctagcttgaac |
113 |
Q |
| |
|
|||||| |||||||| ||||||||| ||| |||| ||| ||||| ||| | | ||| |||||||| |||||||||||||||||||||||||||| | |
|
|
| T |
31138866 |
catagggaacatgagcaaattaaataaactctaccttgctaaaaacaccaagttgtatggaccaattcctcactccttgtggaacatgtctagcttgacc |
31138965 |
T |
|
| Q |
114 |
attatcttactttataacatgagtctttctggttcaatccctgaatctgtcgaaaacttgattaatgtgaatcagcttgcacttgatcgcaatcgccttt |
213 |
Q |
| |
|
| |||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
31138966 |
ttgatctacctttttaacatgagtctttctggttcaatccctgaatctgtcgaaaacttgattaatgtgaatgagcttgcacttgatcgcaatcgccttt |
31139065 |
T |
|
| Q |
214 |
ctggaaccattccttccacaattggaaacttgaaaaatctccaatatttgattttgggattcaatcatttttctggatcaattcctgcctctataggaaa |
313 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||| |||| ||| | |||| | | || ||||||||||||||| |||||||||| |
|
|
| T |
31139066 |
ctggaaccattccttccacaattggaaacttgaaaaacctccaatatttgtttttaggaatgaatcgtctgtcaggatcaattcctgccactataggaaa |
31139165 |
T |
|
| Q |
314 |
tttgatcaatttggtaatcc-ttagtctccaagaaaacaatctcactggaacaattccagctacaattggaaatttgaagctgctcagtgtctttgaatt |
412 |
Q |
| |
|
|||||||||||||| | ||| ||||| ||||||||||||||||||| ||||| |||||| ||||||||||||||||||| | ||||| |||||||||| | |
|
|
| T |
31139166 |
tttgatcaatttgg-attcctttagtgtccaagaaaacaatctcacaggaactattccaactacaattggaaatttgaatcggctcactgtctttgaagt |
31139264 |
T |
|
| Q |
413 |
aactaaaaataaacttcatggtagaattccaaatgaactcaataacaataccaattggtattcctttcttgtgtctgagaatgattttgttggccatttg |
512 |
Q |
| |
|
| || |||||||||||||||||||||||||||| ||| |||||| |||||||||| ||||||| ||||||| | ||||||||||||||||||||| |
|
|
| T |
31139265 |
agctgccaataaacttcatggtagaattccaaatggactttataacataaccaattggttttcctttattgtgtccaaaaatgattttgttggccatttg |
31139364 |
T |
|
| Q |
513 |
ccgtctcaaatatgttctggtggaaaattaacgttcttaaatgctgataatgaccgtttcactggtccaataccaacaagtttgaaaaactgctctagca |
612 |
Q |
| |
|
|||||||||||||| ||||||||| |||||||| |||||||||||| | |||||||||| ||||| ||||||||||||||||||||||| ||||||| |
|
|
| T |
31139365 |
ccgtctcaaatatgctctggtggattgttaacgttattaaatgctgatcacaaccgtttcaccggtcctataccaacaagtttgaaaaactgttctagca |
31139464 |
T |
|
| Q |
613 |
tccgaaggatcagaattgaggcaaatcaaatagaaggtgatatagcacaagtttttggtgtgtatccaaatttgcaatactttgaggcaagtgataataa |
712 |
Q |
| |
|
| ||| ||||| | |||| |||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||| | ||||||||||| |
|
|
| T |
31139465 |
ttgaaagaatcaggctggaggtgaatcaaatagaaggtgatatagcacaagattttggtgtgtatccaaatttgcgatactttgatgtcagtgataataa |
31139564 |
T |
|
| Q |
713 |
atttcatggacaaatttcaccaaactggggaaagtgtcttaatattgagaatttcaagatatccaacaataatatttctggtgctataccattagaactt |
812 |
Q |
| |
|
| |||||||||| ||||||||||||||||||||| |||||||| |||| | |||| ||||||||||||||||||||||||| | |||||||||||||||| |
|
|
| T |
31139565 |
acttcatggacacatttcaccaaactggggaaagagtcttaatcttgatactttccagatatccaacaataatatttctggggttataccattagaactt |
31139664 |
T |
|
| Q |
813 |
actcgtttaaccaagctaggta |
834 |
Q |
| |
|
| | |||||||||||||||||| |
|
|
| T |
31139665 |
attggtttaaccaagctaggta |
31139686 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 14 - 829
Target Start/End: Original strand, 31057054 - 31057869
Alignment:
| Q |
14 |
cataggcaacatgagtaaattaaatttacttatcctttgtaataacacaaaggtttctggtccaattccacactccttgtggaacatgtctagcttgaac |
113 |
Q |
| |
|
|||||| ||| |||| |||||| || |||| | |||| ||||||||| ||| | ||||||||||||||||| ||||||||||||||||||||||||| | |
|
|
| T |
31057054 |
catagggaacttgagcaaattagatacacttgttctttctaataacaccaagatgtctggtccaattccacattccttgtggaacatgtctagcttgacc |
31057153 |
T |
|
| Q |
114 |
attatcttacttt-ataacatgagtctttctggttcaatccctgaatctgtcgaaaacttgattaatgtgaatcagcttgcacttgatcgcaatcgcctt |
212 |
Q |
| |
|
| ||| ||||| ||||||| |||||||||||||||||||||| || | |||||||| ||||| |||| | |||||||||||| ||||| |||| |
|
|
| T |
31057154 |
gtactct-actttgataacataggtctttctggttcaatccctgattccatacaaaacttggttaatttgaaggaacttgcacttgatatcaatcacctt |
31057252 |
T |
|
| Q |
213 |
tctggaaccattccttccacaattggaaacttgaaaaatctccaatatttgattttgggattcaatcatttttctggatcaattcctgcctctataggaa |
312 |
Q |
| |
|
|||||| ||||||||||||| |||||| |||||||||||||| | ||| ||||||| ||| || |||||||| ||||||||||||||||||||| |
|
|
| T |
31057253 |
tctggatccattccttccactattggagacttgaaaaatctcattaagttgtatttgggaagtaataatctttctggaccaattcctgcctctataggaa |
31057352 |
T |
|
| Q |
313 |
atttgatcaatttggtaatccttagtctccaagaaaacaatctcactggaacaattccagctacaattggaaatttgaagctgctcagtgtctttgaatt |
412 |
Q |
| |
|
|||||||||||||| | |||| ||| ||||||||||||||||||||||||| ||||||||| ||||||||||||||||| ||||| ||| |||||| | |
|
|
| T |
31057353 |
atttgatcaatttgcaagtcctcagtgtccaagaaaacaatctcactggaactattccagcttcaattggaaatttgaagtggctcactgtttttgaagt |
31057452 |
T |
|
| Q |
413 |
aactaaaaataaacttcatggtagaattccaaatgaactcaataacaataccaattggtattcctttcttgtgtctgagaatgattttgttggccatttg |
512 |
Q |
| |
|
| ||| |||||||||||||||||||||||||||| || |||||| ||||||||| ||||||| ||||||| || |||||||||||||| |||||| |
|
|
| T |
31057453 |
agctaccaataaacttcatggtagaattccaaatggtctttataacataaccaattggatttcctttgttgtgtccgaaaatgattttgttggacatttg |
31057552 |
T |
|
| Q |
513 |
ccgtctcaaatatgttctggtggaaaattaacgttcttaaatgctgataatgaccgtttcactggtccaataccaacaagtttgaaaaactgctctagca |
612 |
Q |
| |
|
|||||||||||||| ||||||||| |||| ||| |||||||||||| | |||||||||| ||||||||||||||||||||||||| ||| ||||||| |
|
|
| T |
31057553 |
ccgtctcaaatatgctctggtggatcgttaaggttattaaatgctgatcacaaccgtttcaccggtccaataccaacaagtttgaaaacctgttctagca |
31057652 |
T |
|
| Q |
613 |
tccgaaggatcagaattgaggcaaatcaaatagaaggtgatatagcacaagtttttggtgtgtatccaaatttgcaatactttgaggcaagtgataataa |
712 |
Q |
| |
|
| ||| |||| | |||| |||||||||||||||||||||||||||| ||||||||| ||||| || |||||||| | || ||||| ||||| |
|
|
| T |
31057653 |
ttgaaagaatcacgctggaggtgaatcaaatagaaggtgatatagcacaagattttggtgtatatccgaagttgcaatatctagatctgagtgacaataa |
31057752 |
T |
|
| Q |
713 |
atttcatggacaaatttcaccaaactggggaaagtgtcttaatattgagaatttcaagatatccaacaataatatttctggtgctataccattagaactt |
812 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||| ||||||| || ||| || | ||||| ||||||||||||||||||| |||||||||||| || |
|
|
| T |
31057753 |
atttcatggacaaatttcaccaaactgggggaagtctcttaatcttcagacctttataatatctaacaataatatttctggtgttataccattagatttt |
31057852 |
T |
|
| Q |
813 |
actcgtttaaccaagct |
829 |
Q |
| |
|
| | ||||||||||||| |
|
|
| T |
31057853 |
attggtttaaccaagct |
31057869 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 14 - 834
Target Start/End: Original strand, 31101489 - 31102309
Alignment:
| Q |
14 |
cataggcaacatgagtaaattaaatttacttatcctttgtaataacacaaaggtttctggtccaattccacactccttgtggaacatgtctagcttgaac |
113 |
Q |
| |
|
|||||| |||||||| ||||||||| ||| || || ||||||||| ||| | | ||| |||||||| |||||||||||||||||||||||||||| | |
|
|
| T |
31101489 |
catagggaacatgagcaaattaaatcaactcatgtttgctaataacaccaagttgtatggaccaattcctcactccttgtggaacatgtctagcttgacc |
31101588 |
T |
|
| Q |
114 |
attatcttactttataacatgagtctttctggttcaatccctgaatctgtcgaaaacttgattaatgtgaatcagcttgcacttgatcgcaatcgccttt |
213 |
Q |
| |
|
| |||| ||||||||||||||||||||||||||||||||||| || || |||||||||||||| || || ||||||||| || ||| ||||| |
|
|
| T |
31101589 |
ttgatctacctttataacatgagtctttctggttcaatccctgattcagtacaaaacttgattaatttggatgtacttgcactttatatgaataaccttt |
31101688 |
T |
|
| Q |
214 |
ctggaaccattccttccacaattggaaacttgaaaaatctccaatatttgattttgggattcaatcatttttctggatcaattcctgcctctataggaaa |
313 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||| ||| | ||| ||||| || |||| ||||||||||||||||||||||||||||||| |
|
|
| T |
31101689 |
ctggattcattccttccacaattggaaacttgaaaaacctcactttattgcttttgcgaaataatcgactttctggatcaattcctgcctctataggaaa |
31101788 |
T |
|
| Q |
314 |
tttgatcaatttggtaatccttagtctccaagaaaacaatctcactggaacaattccagctacaattggaaatttgaagctgctcagtgtctttgaatta |
413 |
Q |
| |
|
||||||||||||| | | ||||| |||||| |||||||||||| ||||| |||||||||||||| ||||||||||||| ||||| |||||||||| || |
|
|
| T |
31101789 |
tttgatcaatttgaaatactttagtgtccaagtaaacaatctcacaggaactattccagctacaatcggaaatttgaagcagctcattgtctttgaagta |
31101888 |
T |
|
| Q |
414 |
actaaaaataaacttcatggtagaattccaaatgaactcaataacaataccaattggtattcctttcttgtgtctgagaatgattttgttggccatttgc |
513 |
Q |
| |
|
|| || |||||| |||||||||||||||||| ||| |||||| ||||||||||||||||||| ||||||| || |||||||||||||||||||||| |
|
|
| T |
31101889 |
gcttccaacaaactttatggtagaattccaaatggactttataacattaccaattggtattcctttgttgtgtccgaaaatgattttgttggccatttgc |
31101988 |
T |
|
| Q |
514 |
cgtctcaaatatgttctggtggaaaattaacgttcttaaatgctgataatgaccgtttcactggtccaataccaacaagtttgaaaaactgctctagcat |
613 |
Q |
| |
|
|||||||||| || | || || ||||| | ||||| ||| | || | ||||||||||||||| ||||||||||||| |||| |||||||||||| |
|
|
| T |
31101989 |
cgtctcaaatgtgcaccgggggctcattaaaatacttaagtgcatttcataatcgtttcactggtccagtaccaacaagtttaaaaagctgctctagcat |
31102088 |
T |
|
| Q |
614 |
ccgaaggatcagaattgaggcaaatcaaatagaaggtgatatagcacaagtttttggtgtgtatccaaatttgcaatactttgaggcaagtgataataaa |
713 |
Q |
| |
|
||| ||||||||||||| |||||||| ||||| ||||||||| ||| ||||||||||||||| ||||||| |||| |||| |||||||||||| |
|
|
| T |
31102089 |
tgaaagaatcagaattgagggtaatcaaatcgaaggagatatagcagaagattttggtgtgtatccgaatttgcgatacgttgacctgagtgataataaa |
31102188 |
T |
|
| Q |
714 |
tttcatggacaaatttcaccaaactggggaaagtgtcttaatattgagaatttcaagatatccaacaataatatttctggtgctataccattagaactta |
813 |
Q |
| |
|
|||||||| || ||||||||||||||||| |||| |||| || |||| | |||| |||||| |||| |||||||||||||| |||||||||||| ||| |
|
|
| T |
31102189 |
tttcatggccacatttcaccaaactgggggaagtctcttgatcttgaaaccttcatgatatctaacactaatatttctggtggtataccattagatttta |
31102288 |
T |
|
| Q |
814 |
ctcgtttaaccaagctaggta |
834 |
Q |
| |
|
| |||||||||||||||||| |
|
|
| T |
31102289 |
ttggtttaaccaagctaggta |
31102309 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 78; E-Value: 7e-36
Query Start/End: Original strand, 573 - 806
Target Start/End: Original strand, 31214832 - 31215065
Alignment:
| Q |
573 |
actggtccaataccaacaagtttgaaaaactgctctagcatccgaaggatcagaattgaggcaaatcaaatagaaggtgatatagcacaagtttttggtg |
672 |
Q |
| |
|
||||||||||||||||| ||||||||||||||| | ||||| ||| ||||||||| ||| |||||||||||||| |||||| |||||| |||||||| |
|
|
| T |
31214832 |
actggtccaataccaactagtttgaaaaactgcacaagcattgtaagaatcagaattcaggataatcaaatagaaggagatatatcacaagattttggtg |
31214931 |
T |
|
| Q |
673 |
tgtatccaaatttgcaatactttgaggcaagtgataataaatttcatggacaaatttcaccaaactggggaaagtgtcttaatattgagaatttcaagat |
772 |
Q |
| |
|
| ||||| || ||| ||||| |||| ||||| |||||| |||||||||| ||||||||||||||||| ||||| | |||| | || |||| ||| |
|
|
| T |
31214932 |
tatatccgaagttggaataccttgaactgagtgacaataaacttcatggacacatttcaccaaactgggggaagtgccctaatctctgcaacttcatgat |
31215031 |
T |
|
| Q |
773 |
atccaacaataatatttctggtgctataccatta |
806 |
Q |
| |
|
||||||||||||||| |||||| ||||||||| |
|
|
| T |
31215032 |
atccaacaataatatcactggtgtcataccatta |
31215065 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 491 - 536
Target Start/End: Original strand, 31214750 - 31214795
Alignment:
| Q |
491 |
gaatgattttgttggccatttgccgtctcaaatatgttctggtgga |
536 |
Q |
| |
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| T |
31214750 |
gaatgattttactggccatttgccacctcaaatatgttctggtgga |
31214795 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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