View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17793_low_20 (Length: 469)

Name: NF17793_low_20
Description: NF17793
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17793_low_20
NF17793_low_20
[»] chr2 (5 HSPs)
chr2 (145-291)||(5055108-5055254)
chr2 (186-291)||(23359953-23360058)
chr2 (157-263)||(7741127-7741232)
chr2 (185-291)||(1763199-1763305)
chr2 (186-264)||(29844157-29844235)
[»] chr3 (10 HSPs)
chr3 (145-291)||(46864224-46864370)
chr3 (156-291)||(44225506-44225641)
chr3 (164-263)||(30301242-30301339)
chr3 (153-291)||(10852738-10852876)
chr3 (158-291)||(42644206-42644338)
chr3 (185-290)||(25181180-25181285)
chr3 (185-290)||(52736734-52736839)
chr3 (158-241)||(32901862-32901945)
chr3 (226-291)||(7012651-7012716)
chr3 (191-240)||(32932189-32932238)
[»] chr7 (6 HSPs)
chr7 (150-288)||(16353384-16353521)
chr7 (165-291)||(38494187-38494313)
chr7 (186-291)||(20088861-20088966)
chr7 (186-290)||(4228539-4228643)
chr7 (145-235)||(47797575-47797665)
chr7 (159-235)||(37148678-37148754)
[»] chr5 (3 HSPs)
chr5 (165-291)||(3748862-3748988)
chr5 (186-291)||(22811011-22811116)
chr5 (191-289)||(43045198-43045296)
[»] chr1 (7 HSPs)
chr1 (153-288)||(29438548-29438680)
chr1 (197-291)||(13344779-13344873)
chr1 (186-291)||(4346969-4347074)
chr1 (185-249)||(36447743-36447807)
chr1 (153-233)||(46966601-46966680)
chr1 (157-288)||(43541650-43541780)
chr1 (247-291)||(25061282-25061326)
[»] scaffold0009 (1 HSPs)
scaffold0009 (186-291)||(199394-199499)
[»] chr4 (13 HSPs)
chr4 (186-291)||(46957979-46958084)
chr4 (186-291)||(22699698-22699803)
chr4 (186-291)||(22980727-22980832)
chr4 (186-291)||(22994314-22994419)
chr4 (186-291)||(28947774-28947879)
chr4 (157-264)||(27245915-27246019)
chr4 (165-261)||(1589649-1589745)
chr4 (186-290)||(14597650-14597754)
chr4 (186-282)||(22702482-22702578)
chr4 (186-282)||(22991539-22991635)
chr4 (185-264)||(20677005-20677083)
chr4 (185-235)||(20231937-20231987)
chr4 (165-230)||(38306201-38306266)
[»] scaffold0015 (1 HSPs)
scaffold0015 (156-291)||(65441-65576)
[»] chr8 (4 HSPs)
chr8 (186-291)||(19649165-19649270)
chr8 (185-291)||(29970780-29970886)
chr8 (185-291)||(39219699-39219805)
chr8 (185-288)||(35550200-35550302)
[»] scaffold0184 (1 HSPs)
scaffold0184 (153-264)||(6900-7009)
[»] scaffold0005 (1 HSPs)
scaffold0005 (186-290)||(219624-219728)


Alignment Details
Target: chr2 (Bit Score: 123; Significance: 5e-63; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 145 - 291
Target Start/End: Original strand, 5055108 - 5055254
Alignment:
Q  145 tgatctatatgttaaaacctattttggtcatttccacgctcaaaagcaattttgacataaaatatccaaacatcatcttacatacaaatcaattttactt 244  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| | |    
T  5055108 tgatctatatgttaaaacctattttggtcatttccacgctcaaaagcaattttgacacaaaatatccaaacatcatcttacatacaaatcaattttgcat 5055207  T
Q  245 tgaaggtatccaaacataaactactttatgttaaactcacttttaac 291  Q
    ||||||||| |||||| |||| |||||||||||||||||||||||||    
T  5055208 tgaaggtattcaaacacaaaccactttatgttaaactcacttttaac 5055254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 186 - 291
Target Start/End: Complemental strand, 23360058 - 23359953
Alignment:
Q  186 aaaagcaattttgacataaaatatccaaacatcatcttacatacaaatcaattttactttgaaggtatccaaacataaactactttatgttaaactcact 285  Q
    |||||||||| |||   |||| ||||||||| ||| || ||||| ||||| ||||  ||||||||||||||||||||||  ||||||  || ||||||||    
T  23360058 aaaagcaattctgattcaaaacatccaaacaacatttttcatactaatcacttttgttttgaaggtatccaaacataaatcactttacattcaactcact 23359959  T
Q  286 tttaac 291  Q
    ||||||    
T  23359958 tttaac 23359953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 157 - 263
Target Start/End: Complemental strand, 7741232 - 7741127
Alignment:
Q  157 taaaacctattttggtcatttccacgctcaaaagcaattttgacataaaatatccaaacatcatcttacatacaaatcaattttactttgaaggtatcca 256  Q
    |||||||||||||||| |||| ||| ||||||||||||||| |   ||| |||||||||| ||| ||  ||| |||||| ||  ||||| ||||||||||    
T  7741232 taaaacctattttggtaatttacacactcaaaagcaatttt-agtcaaattatccaaacaacatatttgatataaatcacttacacttttaaggtatcca 7741134  T
Q  257 aacataa 263  Q
    |||||||    
T  7741133 aacataa 7741127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 185 - 291
Target Start/End: Original strand, 1763199 - 1763305
Alignment:
Q  185 caaaagcaattttgacataaaatatccaaacatcatcttacatacaaatcaattttactttgaaggtatccaaacataaactactttatgttaaactcac 284  Q
    ||||||||||| | | | |||||||||||||||||  || |||| |||||| || |  |||||||||||| |||||||||  ||||||  || ||||||     
T  1763199 caaaagcaattctaatacaaaatatccaaacatcagttttcataaaaatcacttctgttttgaaggtatctaaacataaatcactttaaattcaactcaa 1763298  T
Q  285 ttttaac 291  Q
    |||||||    
T  1763299 ttttaac 1763305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 186 - 264
Target Start/End: Original strand, 29844157 - 29844235
Alignment:
Q  186 aaaagcaattttgacataaaatatccaaacatcatcttacatacaaatcaattttactttgaaggtatccaaacataaa 264  Q
    ||||| |||| ||||  |||| ||||||||| ||| || ||||||||||| ||||  |||||||||| |||||||||||    
T  29844157 aaaagtaattatgactcaaaacatccaaacaacatttttcatacaaatcacttttgttttgaaggtaaccaaacataaa 29844235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 119; Significance: 1e-60; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 145 - 291
Target Start/End: Original strand, 46864224 - 46864370
Alignment:
Q  145 tgatctatatgttaaaacctattttggtcatttccacgctcaaaagcaattttgacataaaatatccaaacatcatcttacatacaaatcaattttactt 244  Q
    ||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||    
T  46864224 tgatctatatgctaaaacctattttagtcatttccacgctcaaaagcaattttgacataaaatattcaaacatcatcttacatacaaatcaattttgctt 46864323  T
Q  245 tgaaggtatccaaacataaactactttatgttaaactcacttttaac 291  Q
    ||||||||| ||||||||||| ||||||||||||| |||||||||||    
T  46864324 tgaaggtatacaaacataaaccactttatgttaaaatcacttttaac 46864370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 156 - 291
Target Start/End: Original strand, 44225506 - 44225641
Alignment:
Q  156 ttaaaacctattttggtcatttccacgctcaaaagcaattttgacataaaatatccaaacatcatcttacatacaaatcaattttactttgaaggtatcc 255  Q
    |||||| | ||||||||||||| |||   ||||||||||||||||||  | |||||||||| ||| || |||||||| || ||||  | ||| |||||||    
T  44225506 ttaaaatccattttggtcatttacacatccaaaagcaattttgacatcgagtatccaaacaacatttttcatacaaagcacttttgttgtgagggtatcc 44225605  T
Q  256 aaacataaactactttatgttaaactcacttttaac 291  Q
    |||||||||  ||||||  |||||||||||||||||    
T  44225606 aaacataaatcactttacattaaactcacttttaac 44225641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 164 - 263
Target Start/End: Complemental strand, 30301339 - 30301242
Alignment:
Q  164 tattttggtcatttccacgctcaaaagcaattttgacataaaatatccaaacatcatcttacatacaaatcaattttactttgaaggtatccaaacataa 263  Q
    |||||||||||||| ||| | ||||||||||||||||| ||  |||||||||| |||||| ||||||||||| || || | |||||| ||||||||||||    
T  30301339 tattttggtcatttacacacccaaaagcaattttgacacaa--tatccaaacaacatctttcatacaaatcacttctattatgaagggatccaaacataa 30301242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 153 - 291
Target Start/End: Complemental strand, 10852876 - 10852738
Alignment:
Q  153 atgttaaaacctattttggtcatttccacgctcaaaagcaattttgacataaaatatccaaacatcatcttacatacaaatcaattttactttgaaggta 252  Q
    ||||||||||||||||||||| ||| |||  | |||||||||| ||||  |||| ||||||| | ||| || |||| |||||| ||||  |||| |||||    
T  10852876 atgttaaaacctattttggtcttttacacatttaaaagcaattctgactcaaaacatccaaataacatttttcatataaatcacttttgttttggaggta 10852777  T
Q  253 tccaaacataaactactttatgttaaactcacttttaac 291  Q
     |||||||||||  ||||||  || ||||||||||||||    
T  10852776 gccaaacataaatcactttacattcaactcacttttaac 10852738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 158 - 291
Target Start/End: Original strand, 42644206 - 42644338
Alignment:
Q  158 aaaacctattttggtcatttccacgctcaaaagcaattttgacataaaatatccaaacatcatcttacatacaaatcaattttactttgaaggtatccaa 257  Q
    |||||||| ||||||||||| ||| | ||||| ||||||| ||| |||||||||||||| ||| || | ||||||||| ||||| ||  ||  |||||||    
T  42644206 aaaacctactttggtcatttacacacccaaaaacaattttaacacaaaatatccaaacaacatttttcctacaaatcattttta-ttataaaatatccaa 42644304  T
Q  258 acataaactactttatgttaaactcacttttaac 291  Q
    |||||||  ||||||  || ||||||||||||||    
T  42644305 acataaatcactttacattcaactcacttttaac 42644338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 185 - 290
Target Start/End: Original strand, 25181180 - 25181285
Alignment:
Q  185 caaaagcaattttgacataaaatatccaaacatcatcttacatacaaatcaattttactttgaaggtatccaaacataaactactttatgttaaactcac 284  Q
    ||||| ||||||||||| |||||||||||||| ||| ||  | |||||||| ||||    ||||||||||||||||||||  | ||||  ||||||||||    
T  25181180 caaaatcaattttgacacaaaatatccaaacaacatattttaaacaaatcacttttgtggtgaaggtatccaaacataaataattttacattaaactcac 25181279  T
Q  285 ttttaa 290  Q
    ||||||    
T  25181280 ttttaa 25181285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 185 - 290
Target Start/End: Original strand, 52736734 - 52736839
Alignment:
Q  185 caaaagcaattttgacataaaatatccaaacatcatcttacatacaaatcaattttactttgaaggtatccaaacataaactactttatgttaaactcac 284  Q
    ||||||||||||||||| |||||||| ||||| ||| || ||||||||||| ||||| | | || ||||||||||| |||  |||||   |||| |||||    
T  52736734 caaaagcaattttgacacaaaatatctaaacaacatatttcatacaaatcacttttattgtaaaagtatccaaacacaaatcacttttcattaacctcac 52736833  T
Q  285 ttttaa 290  Q
    ||||||    
T  52736834 ttttaa 52736839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 158 - 241
Target Start/End: Original strand, 32901862 - 32901945
Alignment:
Q  158 aaaacctattttggtcatttccacgctcaaaagcaattttgacataaaatatccaaacatcatcttacatacaaatcaatttta 241  Q
    |||||||| ||||||||||  ||| | ||||||||||||| ||| |||||||||||||| ||| || | ||||||||| |||||    
T  32901862 aaaacctactttggtcattcacacacccaaaagcaattttaacacaaaatatccaaacaacatttttcctacaaatcactttta 32901945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 226 - 291
Target Start/End: Original strand, 7012651 - 7012716
Alignment:
Q  226 atacaaatcaattttactttgaaggtatccaaacataaactactttatgttaaactcacttttaac 291  Q
    |||||||||| ||||  ||||||||||||||||||||||  ||||||  || ||||||||||||||    
T  7012651 atacaaatcacttttcttttgaaggtatccaaacataaatcactttacattcaactcacttttaac 7012716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 191 - 240
Target Start/End: Complemental strand, 32932238 - 32932189
Alignment:
Q  191 caattttgacataaaatatccaaacatcatcttacatacaaatcaatttt 240  Q
    ||||||||||| |||||||||||||| ||| || ||||||||||| ||||    
T  32932238 caattttgacacaaaatatccaaacaacatatttcatacaaatcactttt 32932189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 52; Significance: 1e-20; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 150 - 288
Target Start/End: Original strand, 16353384 - 16353521
Alignment:
Q  150 tatatgttaaaacctattttggtcatttccacgctcaaaagcaattttgacataaaatatccaaacatcatcttacatacaaatcaattttactttg--a 247  Q
    |||||||||||||||||||||||||||| ||| |  |||||||||||||||| | | |||||||||| ||| |||||||||||| | |||   ||||  |    
T  16353384 tatatgttaaaacctattttggtcatttgcacacctaaaagcaattttgacacacagtatccaaacaacattttacatacaaattatttt---tttgcaa 16353480  T
Q  248 aggtatccaaacataaactactttatgttaaactcactttt 288  Q
    || ||| ||||||||||| ||||||  ||||||||||||||    
T  16353481 agatattcaaacataaaccactttagattaaactcactttt 16353521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 165 - 291
Target Start/End: Original strand, 38494187 - 38494313
Alignment:
Q  165 attttggtcatttccacgctcaaaagcaattttgacataaaatatccaaacatcatcttacatacaaatcaattttactttgaaggtatccaaacataaa 264  Q
    ||||||||||||| ||| ||||||| |||||||||||  |||||||||||||  || || ||||||||||| || || | |||||||| |||||||||||    
T  38494187 attttggtcatttacacactcaaaaacaattttgacaccaaatatccaaacaaaatatttcatacaaatcacttctattgtgaaggtaaccaaacataaa 38494286  T
Q  265 ctactttatgttaaactcacttttaac 291  Q
    | |||| |  || ||||||||||||||    
T  38494287 ccacttcacattcaactcacttttaac 38494313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 186 - 291
Target Start/End: Original strand, 20088861 - 20088966
Alignment:
Q  186 aaaagcaattttgacataaaatatccaaacatcatcttacatacaaatcaattttactttgaaggtatccaaacataaactactttatgttaaactcact 285  Q
    |||||||||| ||||| |||| ||||||||| ||| || |||||||| |  || | |||| |||||| |||||||||||  |||||| ||| ||||||||    
T  20088861 aaaagcaattctgacacaaaacatccaaacaacatttttcatacaaagctcttctgctttaaaggtaaccaaacataaatcactttacgttcaactcact 20088960  T
Q  286 tttaac 291  Q
    ||||||    
T  20088961 tttaac 20088966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 186 - 290
Target Start/End: Original strand, 4228539 - 4228643
Alignment:
Q  186 aaaagcaattttgacataaaatatccaaacatcatcttacatacaaatcaattttactttgaaggtatccaaacataaactactttatgttaaactcact 285  Q
    |||||||||||||||| ||||||| |||||| |||||| ||||  ||||| || ||  || ||||||||||||||||||  |||||   || ||||||||    
T  4228539 aaaagcaattttgacacaaaatattcaaacaacatctttcatatgaatcacttctatcttaaaggtatccaaacataaatcacttttcattcaactcact 4228638  T
Q  286 tttaa 290  Q
    |||||    
T  4228639 tttaa 4228643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 145 - 235
Target Start/End: Original strand, 47797575 - 47797665
Alignment:
Q  145 tgatctatatgttaaaacctattttggtcatttccacgctcaaaagcaattttgacataaaatatccaaacatcatcttacatacaaatca 235  Q
    ||||||| || || ||||| ||||| || ||||||||   | ||| ||||||||||| ||||||||||||||| ||||||||| |||||||    
T  47797575 tgatctacatcttcaaacccattttagtaatttccacctccgaaatcaattttgacacaaaatatccaaacattatcttacatgcaaatca 47797665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 159 - 235
Target Start/End: Complemental strand, 37148754 - 37148678
Alignment:
Q  159 aaacctattttggtcatttccacgctcaaaagcaattttgacataaaatatccaaacatcatcttacatacaaatca 235  Q
    ||||| ||||||||||||| |||    |||| ||||||||||||||||||||||||||  ||| | |||||||||||    
T  37148754 aaacccattttggtcatttacacaacgaaaatcaattttgacataaaatatccaaacaatatcattcatacaaatca 37148678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 51; Significance: 5e-20; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 165 - 291
Target Start/End: Original strand, 3748862 - 3748988
Alignment:
Q  165 attttggtcatttccacgctcaaaagcaattttgacataaaatatccaaacatcatcttacatacaaatcaattttactttgaaggtatccaaacataaa 264  Q
    ||||||||||||| ||| | |||||| ||||||||||  |||||||||||||  ||||| ||||||||| | ||  | | |||||||| |||||||||||    
T  3748862 attttggtcatttacacacccaaaagtaattttgacaccaaatatccaaacaaaatctttcatacaaataacttcaattgtgaaggtaaccaaacataaa 3748961  T
Q  265 ctactttatgttaaactcacttttaac 291  Q
    | ||||||  |||||||||||||||||    
T  3748962 ccactttacattaaactcacttttaac 3748988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 186 - 291
Target Start/End: Original strand, 22811011 - 22811116
Alignment:
Q  186 aaaagcaattttgacataaaatatccaaacatcatcttacatacaaatcaattttactttgaaggtatccaaacataaactactttatgttaaactcact 285  Q
    |||||||||| ||||  |||| || |||||| ||| || ||||| ||||| ||||  ||||||||||||||||||||||  ||||||  || ||||||||    
T  22811011 aaaagcaattctgactcaaaacatgcaaacaacatttttcatactaatcacttttgttttgaaggtatccaaacataaatcactttacattcaactcact 22811110  T
Q  286 tttaac 291  Q
    ||||||    
T  22811111 tttaac 22811116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 191 - 289
Target Start/End: Complemental strand, 43045296 - 43045198
Alignment:
Q  191 caattttgacataaaatatccaaacatcatcttacatacaaatcaattttactttgaaggtatccaaacataaactactttatgttaaactcactttta 289  Q
    ||||||||| | |||||||||||||| ||| || ||||||||||| ||||    | |||||||| ||||||||| || ||||   ||||||||||||||    
T  43045296 caattttgatacaaaatatccaaacaacatatttcatacaaatcacttttgtaataaaggtatctaaacataaattaatttacactaaactcactttta 43045198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 50; Significance: 2e-19; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 153 - 288
Target Start/End: Original strand, 29438548 - 29438680
Alignment:
Q  153 atgttaaaacctattttggtcatttccacgctcaaaagcaattttgacataaaatatccaaacatcatcttacatacaaatcaattttactttgaaggta 252  Q
    ||||||||||||||||||||||||| ||  || |||||||| ||||||| | ||||||||||||  || |||||||||||||| |||| |    ||||||    
T  29438548 atgttaaaacctattttggtcatttgcatacttaaaagcaagtttgacacacaatatccaaacaatattttacatacaaatcatttttgc---aaaggta 29438644  T
Q  253 tccaaacataaactactttatgttaaactcactttt 288  Q
    |  |||||||||| ||||||| || |||||||||||    
T  29438645 tataaacataaaccactttatattgaactcactttt 29438680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 197 - 291
Target Start/End: Original strand, 13344779 - 13344873
Alignment:
Q  197 tgacataaaatatccaaacatcatcttacatacaaatcaattttactttgaaggtatccaaacataaactactttatgttaaactcacttttaac 291  Q
    |||||||||||||||||||| |||||||||||||||| | || |  || ||| | | |||||||||||  |||||| ||| ||||||||||||||    
T  13344779 tgacataaaatatccaaacaacatcttacatacaaattacttatgtttagaaagcaaccaaacataaatcactttacgttcaactcacttttaac 13344873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 186 - 291
Target Start/End: Original strand, 4346969 - 4347074
Alignment:
Q  186 aaaagcaattttgacataaaatatccaaacatcatcttacatacaaatcaattttactttgaaggtatccaaacataaactactttatgttaaactcact 285  Q
    |||||||||| | ||  |||| |||||||||  || || ||||||||||| ||||  ||||||||||||||||||||||  ||||||  || ||||||||    
T  4346969 aaaagcaattctcactcaaaacatccaaacaaaatttttcatacaaatcacttttgttttgaaggtatccaaacataaatcactttacattcaactcact 4347068  T
Q  286 tttaac 291  Q
    ||||||    
T  4347069 tttaac 4347074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 185 - 249
Target Start/End: Complemental strand, 36447807 - 36447743
Alignment:
Q  185 caaaagcaattttgacataaaatatccaaacatcatcttacatacaaatcaattttactttgaag 249  Q
    ||||||||||||||||| |||||||||||||| ||||||  ||| |||||| || |||| |||||    
T  36447807 caaaagcaattttgacacaaaatatccaaacaacatcttttatataaatcacttctactatgaag 36447743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 153 - 233
Target Start/End: Original strand, 46966601 - 46966680
Alignment:
Q  153 atgttaaaacctattttggtcatttccacgctcaaaagcaattttgacataaaatatccaaacatcatcttacatacaaat 233  Q
    ||||||||||| |||||| |||||  |||  |||||| ||||||||| ||||| ||| |||||| ||||||||||||||||    
T  46966601 atgttaaaacccattttgatcattcacacattcaaaaacaattttgaaataaa-tattcaaacaacatcttacatacaaat 46966680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 157 - 288
Target Start/End: Complemental strand, 43541780 - 43541650
Alignment:
Q  157 taaaacctattttggtcatttccacgctcaaaagcaattttgacataaaatatccaaacatcatcttacatacaaatcaattttactttgaaggtatcca 256  Q
    |||||||||||||||| |||| ||| | ||||||| ||||| |   ||| |||||||||| ||| ||  ||| |||||| ||  ||||| ||||||||||    
T  43541780 taaaacctattttggtaatttacacacccaaaagcgatttt-agtcaaattatccaaacaacatatttgatataaatcacttacacttttaaggtatcca 43541682  T
Q  257 aacataaactactttatgttaaactcactttt 288  Q
    ||||||||  |||| || || |||||||||||    
T  43541681 aacataaatcacttcattttcaactcactttt 43541650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 247 - 291
Target Start/End: Original strand, 25061282 - 25061326
Alignment:
Q  247 aaggtatccaaacataaactactttatgttaaactcacttttaac 291  Q
    ||||||||||||||||||  | |||||||| ||||||||||||||    
T  25061282 aaggtatccaaacataaatcaatttatgttcaactcacttttaac 25061326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 46; Significance: 5e-17; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 186 - 291
Target Start/End: Complemental strand, 199499 - 199394
Alignment:
Q  186 aaaagcaattttgacataaaatatccaaacatcatcttacatacaaatcaattttactttgaaggtatccaaacataaactactttatgttaaactcact 285  Q
    |||||||||| ||||| |||| ||||||||| ||| || |||||||| || || || |||||||||| |||||||||||  |||||| ||| ||||||||    
T  199499 aaaagcaattctgacacaaaacatccaaacaacatttttcatacaaagcacttatattttgaaggtaaccaaacataaatcactttacgttcaactcact 199400  T
Q  286 tttaac 291  Q
    ||||||    
T  199399 tttaac 199394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 46; Significance: 5e-17; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 186 - 291
Target Start/End: Original strand, 46957979 - 46958084
Alignment:
Q  186 aaaagcaattttgacataaaatatccaaacatcatcttacatacaaatcaattttactttgaaggtatccaaacataaactactttatgttaaactcact 285  Q
    |||||||||| ||||| |||| ||||||||| ||| || |||||||| || || |  |||||||||| ||||||||||| ||||||| ||| ||||||||    
T  46957979 aaaagcaattctgacacaaaacatccaaacaacatttttcatacaaagcacttctgttttgaaggtaaccaaacataaattactttacgttcaactcact 46958078  T
Q  286 tttaac 291  Q
    ||||||    
T  46958079 tttaac 46958084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 186 - 291
Target Start/End: Original strand, 22699698 - 22699803
Alignment:
Q  186 aaaagcaattttgacataaaatatccaaacatcatcttacatacaaatcaattttactttgaaggtatccaaacataaactactttatgttaaactcact 285  Q
    |||||||||| ||||  |||| |||||||||  || || ||||||||||| ||||  ||||||||||||||||||||||  ||||||  || |||| |||    
T  22699698 aaaagcaattatgactcaaaacatccaaacaaaatttttcatacaaatcacttttgttttgaaggtatccaaacataaatcactttacattcaacttact 22699797  T
Q  286 tttaac 291  Q
    ||||||    
T  22699798 tttaac 22699803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 186 - 291
Target Start/End: Complemental strand, 22980832 - 22980727
Alignment:
Q  186 aaaagcaattttgacataaaatatccaaacatcatcttacatacaaatcaattttactttgaaggtatccaaacataaactactttatgttaaactcact 285  Q
    |||||||||| ||||  |||| |||||||||  || || ||||||||||| ||||  ||||||||||||||||||||||  ||||||  || |||| |||    
T  22980832 aaaagcaattatgactcaaaacatccaaacaaaatttttcatacaaatcacttttgttttgaaggtatccaaacataaatcactttacattcaacttact 22980733  T
Q  286 tttaac 291  Q
    ||||||    
T  22980732 tttaac 22980727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 186 - 291
Target Start/End: Complemental strand, 22994419 - 22994314
Alignment:
Q  186 aaaagcaattttgacataaaatatccaaacatcatcttacatacaaatcaattttactttgaaggtatccaaacataaactactttatgttaaactcact 285  Q
    |||||||||| ||||  |||| |||||||||  || || ||||||||||| ||||  ||||||||||||||||||||||  ||||||  || |||| |||    
T  22994419 aaaagcaattatgactcaaaacatccaaacaaaatttttcatacaaatcacttttgttttgaaggtatccaaacataaatcactttacattcaacttact 22994320  T
Q  286 tttaac 291  Q
    ||||||    
T  22994319 tttaac 22994314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 186 - 291
Target Start/End: Complemental strand, 28947879 - 28947774
Alignment:
Q  186 aaaagcaattttgacataaaatatccaaacatcatcttacatacaaatcaattttactttgaaggtatccaaacataaactactttatgttaaactcact 285  Q
    |||||||||| ||||| |||| || ||||||  || || |||||||| || || || |||||||||| |||||||||||  |||||| ||| ||||||||    
T  28947879 aaaagcaattctgacacaaaacattcaaacaatatttttcatacaaaacacttctattttgaaggtaaccaaacataaatcactttacgttcaactcact 28947780  T
Q  286 tttaac 291  Q
    ||||||    
T  28947779 tttaac 28947774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 157 - 264
Target Start/End: Original strand, 27245915 - 27246019
Alignment:
Q  157 taaaacctattttggtcatttccacgctcaaaagcaattttgacataaaatatccaaacatcatcttacatacaaatcaattttactttgaaggtatcca 256  Q
    ||||||| |||||||| |||||||| ||   || ||||||||||| ||| | ||||||||||||||||||||||||||| |||| ||||| | ||| |||    
T  27245915 taaaacccattttggtaatttccac-ctttgaatcaattttgacacaaa-tgtccaaacatcatcttacatacaaatcacttttgctttg-atgtaacca 27246011  T
Q  257 aacataaa 264  Q
    ||||||||    
T  27246012 aacataaa 27246019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 165 - 261
Target Start/End: Complemental strand, 1589745 - 1589649
Alignment:
Q  165 attttggtcatttccacgctcaaaagcaattttgacataaaatatccaaacatcatcttacatacaaatcaattttactttgaaggtatccaaacat 261  Q
    ||||||||||||| ||  |  |||||||||||  ||||||||||||||||||  |  || |||||||||||||||||  || |||| ||||||||||    
T  1589745 attttggtcatttacaaaccaaaaagcaatttcaacataaaatatccaaacaatacttttcatacaaatcaattttatattaaaggcatccaaacat 1589649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 186 - 290
Target Start/End: Complemental strand, 14597754 - 14597650
Alignment:
Q  186 aaaagcaattttgacataaaatatccaaacatcatcttacatacaaatcaattttactttgaaggtatccaaacataaactactttatgttaaactcact 285  Q
    |||||||||||||||| |||||||||||||| |||||  ||||  ||||| || ||  || ||| ||||||||||||||  |||||   || ||||||||    
T  14597754 aaaagcaattttgacacaaaatatccaaacaacatctctcataagaatcacttctatcttaaagatatccaaacataaatcacttttcattcaactcact 14597655  T
Q  286 tttaa 290  Q
    |||||    
T  14597654 tttaa 14597650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 186 - 282
Target Start/End: Complemental strand, 22702578 - 22702482
Alignment:
Q  186 aaaagcaattttgacataaaatatccaaacatcatcttacatacaaatcaattttactttgaaggtatccaaacataaactactttatgttaaactc 282  Q
    |||||||||| ||||| |||| |||| ||||  || || |||||||| || || || |||||||||| |||||||||||  |||||||||| |||||    
T  22702578 aaaagcaattctgacacaaaacatccgaacaatatttttcatacaaaacacttctattttgaaggtaaccaaacataaatcactttatgttcaactc 22702482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 186 - 282
Target Start/End: Original strand, 22991539 - 22991635
Alignment:
Q  186 aaaagcaattttgacataaaatatccaaacatcatcttacatacaaatcaattttactttgaaggtatccaaacataaactactttatgttaaactc 282  Q
    |||||||||| ||||| |||| |||| ||||  || || |||||||| || || || |||||||||| |||||||||||  |||||||||| |||||    
T  22991539 aaaagcaattctgacacaaaacatccgaacaatatttttcatacaaaacacttctattttgaaggtaaccaaacataaatcactttatgttcaactc 22991635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 185 - 264
Target Start/End: Original strand, 20677005 - 20677083
Alignment:
Q  185 caaaagcaattttgacataaaatatccaaacatcatcttacatacaaatcaattttactttgaaggtatccaaacataaa 264  Q
    ||||||||||||||||| |||||||||||||| || |||   || |||||| || |||| |||| |||||||||||||||    
T  20677005 caaaagcaattttgacacaaaatatccaaacaacaacttttgtataaatcacttctactatgaa-gtatccaaacataaa 20677083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 185 - 235
Target Start/End: Original strand, 20231937 - 20231987
Alignment:
Q  185 caaaagcaattttgacataaaatatccaaacatcatcttacatacaaatca 235  Q
    ||||||||||||||||| |||||||| ||||| ||| || |||||||||||    
T  20231937 caaaagcaattttgacacaaaatatctaaacaacatatttcatacaaatca 20231987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 165 - 230
Target Start/End: Complemental strand, 38306266 - 38306201
Alignment:
Q  165 attttggtcatttccacgctcaaaagcaattttgacataaaatatccaaacatcatcttacataca 230  Q
    ||||||||||||| ||  | |||||| |||||| |||||||||||||||||| ||| || ||||||    
T  38306266 attttggtcatttacatacccaaaagtaattttaacataaaatatccaaacaacatttttcataca 38306201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0015 (Bit Score: 44; Significance: 7e-16; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 156 - 291
Target Start/End: Original strand, 65441 - 65576
Alignment:
Q  156 ttaaaacctattttggtcatttccacgctcaaaagcaattttgacataaaatatccaaacatcatcttacatacaaatcaattttactttgaaggtatcc 255  Q
    |||||||  ||||||||||||| ||| | ||||| ||||||||||| ||| ||||||||||  || || ||||||||||| ||||  | ||| | |||||    
T  65441 ttaaaactcattttggtcatttacacacccaaaatcaattttgacacaaagtatccaaacaatatttttcatacaaatcacttttgttgtgaggatatcc 65540  T
Q  256 aaacataaactactttatgttaaactcacttttaac 291  Q
    |||||||||  ||||||  ||||||||| |||||||    
T  65541 aaacataaatcactttacattaaactcatttttaac 65576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 186 - 291
Target Start/End: Original strand, 19649165 - 19649270
Alignment:
Q  186 aaaagcaattttgacataaaatatccaaacatcatcttacatacaaatcaattttactttgaaggtatccaaacataaactactttatgttaaactcact 285  Q
    |||||||||| ||||  |||| |||||||||  || || ||||||||||| ||||  ||||||||||||||||||||||  ||||||  || ||||||||    
T  19649165 aaaagcaattctgactcaaaacatccaaacaaaatttttcatacaaatcacttttgttttgaaggtatccaaacataaatcactttacattcaactcact 19649264  T
Q  286 tttaac 291  Q
    ||||||    
T  19649265 tttaac 19649270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 185 - 291
Target Start/End: Original strand, 29970780 - 29970886
Alignment:
Q  185 caaaagcaattttgacataaaatatccaaacatcatcttacatacaaatcaattttactttgaaggtatccaaacataaactactttatgttaaactcac 284  Q
    ||||||||||||| ||||||||||| |||| | ||| || ||||||||||| || || | | ||||||||||||||||||  ||||||   | |||||||    
T  29970780 caaaagcaattttaacataaaatattcaaataacatttttcatacaaatcatttctattgtaaaggtatccaaacataaatcactttaaactcaactcac 29970879  T
Q  285 ttttaac 291  Q
    |||||||    
T  29970880 ttttaac 29970886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 185 - 291
Target Start/End: Original strand, 39219699 - 39219805
Alignment:
Q  185 caaaagcaattttgacataaaatatccaaacatcatcttacatacaaatcaattttactttgaaggtatccaaacataaactactttatgttaaactcac 284  Q
    |||||||||||||||||   | |||||||||| ||| || |||||||| || ||||  | ||| | ||||||||||||||  |||| || ||||||||||    
T  39219699 caaaagcaattttgacaccgagtatccaaacaacatttttcatacaaagcacttttgttgtgaggatatccaaacataaatcacttcatattaaactcac 39219798  T
Q  285 ttttaac 291  Q
    |||||||    
T  39219799 ttttaac 39219805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 185 - 288
Target Start/End: Original strand, 35550200 - 35550302
Alignment:
Q  185 caaaagcaattttgacataaaatatccaaacatcatcttacatacaaatcaattttactttgaaggtatccaaacataaactactttatgttaaactcac 284  Q
    ||||||||||||||||| |||||||||||||| |||||| | ||  ||||| || |||| |||| | ||||||||| |||  ||||||   |||||||||    
T  35550200 caaaagcaattttgacacaaaatatccaaacaacatctttcgtatcaatcacttctactatgaa-gcatccaaacaaaaatcactttacactaaactcac 35550298  T
Q  285 tttt 288  Q
    ||||    
T  35550299 tttt 35550302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0184 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0184
Description:

Target: scaffold0184; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 153 - 264
Target Start/End: Original strand, 6900 - 7009
Alignment:
Q  153 atgttaaaacctattttggtcatttccacgctcaaaagcaattttgacataaaatatccaaacatcatcttacatacaaatcaattttactttgaaggta 252  Q
    ||||||||| | ||||||||||||| |||  |||||| |||||||||||| ||||||  ||||| ||| ||  |||||||||| ||||  |||||| |||    
T  6900 atgttaaaatccattttggtcatttacacattcaaaatcaattttgacat-aaatatttaaacaacatattttatacaaatcacttttgttttgaa-gta 6997  T
Q  253 tccaaacataaa 264  Q
    ||||||||||||    
T  6998 tccaaacataaa 7009  T

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Target: scaffold0005 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 186 - 290
Target Start/End: Original strand, 219624 - 219728
Alignment:
Q  186 aaaagcaattttgacataaaatatccaaacatcatcttacatacaaatcaattttactttgaaggtatccaaacataaactactttatgttaaactcact 285  Q
    |||||||||||||||| |||||||||||||| |||||  ||||  ||||| || ||  || ||| ||||||||||||||  |||||   || ||||||||    
T  219624 aaaagcaattttgacacaaaatatccaaacaacatctctcataagaatcacttctatcttaaagatatccaaacataaatcacttttcattcaactcact 219723  T
Q  286 tttaa 290  Q
    |||||    
T  219724 tttaa 219728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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