View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17793_low_23 (Length: 451)

Name: NF17793_low_23
Description: NF17793
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17793_low_23
NF17793_low_23
[»] chr4 (18 HSPs)
chr4 (19-439)||(6030658-6031078)
chr4 (60-167)||(3750049-3750155)
chr4 (38-167)||(5570099-5570227)
chr4 (26-122)||(5851976-5852072)
chr4 (26-125)||(5554340-5554439)
chr4 (38-167)||(5885290-5885418)
chr4 (195-255)||(5894366-5894426)
chr4 (359-434)||(5552384-5552459)
chr4 (26-125)||(5859202-5859301)
chr4 (178-227)||(5554222-5554271)
chr4 (353-434)||(5853910-5853991)
chr4 (179-219)||(5565584-5565624)
chr4 (348-405)||(5540212-5540269)
chr4 (348-421)||(5572075-5572148)
chr4 (257-322)||(5895881-5895946)
chr4 (179-255)||(5559994-5560070)
chr4 (107-167)||(5560106-5560165)
chr4 (357-421)||(5584291-5584355)
[»] chr8 (2 HSPs)
chr8 (178-243)||(1486246-1486311)
chr8 (33-167)||(23268519-23268652)
[»] scaffold0454 (1 HSPs)
scaffold0454 (195-243)||(1431-1479)


Alignment Details
Target: chr4 (Bit Score: 390; Significance: 0; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 390; E-Value: 0
Query Start/End: Original strand, 19 - 439
Target Start/End: Original strand, 6030658 - 6031078
Alignment:
Q  19 tagacagcaatgaaaattgcattactttcattgttttcctgccttctatgctactactgcatttacatcagtttcaaattctctgttacctctgccaaat 118  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6030658 tagacagcaatgaaaattgcattactttcattgttttccttccttctatgctactactgcatttacatcagtttcaaattctctgttacctctgccaaat 6030757  T
Q  119 gtcttgacgaatcaaccctcattgttgcttcaattaaaa-accaatctcaaattgaagacatggaatcaaaacattccttgctgcaattggagcggtgta 217  Q
    |||||| ||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6030758 gtcttggcga-tcaaccctcattgttgcttcaattaaaaaaccaatctcaaattgaagacatggaatcaaaacattccttgctgcaattggagcggtgta 6030856  T
Q  218 acttttgacaatgaatgacatgttatgggcctagacctaagtatttagatttctcaaccgttaaattttctgctatcccacaatatattggtaattacat 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  6030857 acttttgacaatgaatgacatgttatgggcctagacctaagtatttagatttctcaaccgtcaaattttctgctatcccacaatatattggtaattacat 6030956  T
Q  318 gtcttttacagtttttcaatctctcaaagcatccttcattccctctgcaattcttcaaacattcaggtgcttaatctttccattaataagatttatggaa 417  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  6030957 gtcttttacagtttttcaatctctcaaagcatccttcattccctctgcaatgcttcaaacattcaggtgcttaatctttccattaataagatttatggaa 6031056  T
Q  418 caataccgacatgtttactgat 439  Q
    ||||||||||||||||||||||    
T  6031057 caataccgacatgtttactgat 6031078  T

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Target: chr4; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 60 - 167
Target Start/End: Complemental strand, 3750155 - 3750049
Alignment:
Q  60 ccttctatgctactactgcatttacatcagtttcaaattctctgttacctctgccaaatgtcttgacgaatcaaccctcattgttgcttcaattaaaaac 159  Q
    |||||| ||||||||| |||| ||  |||||||| || ||| |||||||||||||||||||||||| | ||||||  ||||||||||||||||||||||     
T  3750155 ccttctttgctactacagcatatatctcagtttccaaatctttgttacctctgccaaatgtcttga-ggatcaacaatcattgttgcttcaattaaaaaa 3750057  T
Q  160 caatctca 167  Q
    ||||||||    
T  3750056 caatctca 3750049  T

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Target: chr4; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 38 - 167
Target Start/End: Original strand, 5570099 - 5570227
Alignment:
Q  38 cattactttcattgttttcctgccttctatgctactactgcatttacatcagtttcaaattctctgttacctctgccaaatgtcttgacgaatcaaccct 137  Q
    ||||| ||||||||||||||| ||||||||||||||||||||| ||  ||| |||| || || ||||| |||| |||||||||||||| | ||||||  |    
T  5570099 cattagtttcattgttttccttccttctatgctactactgcatatatctcactttccaaatcactgttgcctcagccaaatgtcttga-ggatcaacaat 5570197  T
Q  138 cattgttgcttcaattaaaaaccaatctca 167  Q
    | |||||||| ||| ||||||  |||||||    
T  5570198 cgttgttgctccaactaaaaaataatctca 5570227  T

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Target: chr4; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 26 - 122
Target Start/End: Original strand, 5851976 - 5852072
Alignment:
Q  26 caatgaaaattgcattactttcattgttttcctgccttctatgctactactgcatttacatcagtttcaaattctctgttacctctgccaaatgtct 122  Q
    |||||| |||| |||||||| |||||||||||| | |||| ||||||||||||||||| ||||||||| || || | ||| |||| |||||||||||    
T  5851976 caatgagaattacattacttccattgttttccttcattctctgctactactgcatttatatcagtttccaaatcaccgttgcctcagccaaatgtct 5852072  T

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Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 26 - 125
Target Start/End: Complemental strand, 5554439 - 5554340
Alignment:
Q  26 caatgaaaattgcattactttcattgttttcctgccttctatgctactactgcatttacatcagtttcaaattctctgttacctctgccaaatgtcttga 125  Q
    ||||||||||| ||||| | ||||||||||||| |||||  ||||| |||||||| || |  |||||| || ||||| || |||||||||||||||||||    
T  5554439 caatgaaaattacattagtgtcattgttttccttccttcgctgctattactgcatatataatagtttccaaatctcttttgcctctgccaaatgtcttga 5554340  T

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Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 38 - 167
Target Start/End: Original strand, 5885290 - 5885418
Alignment:
Q  38 cattactttcattgttttcctgccttctatgctactactgcatttacatcagtttcaaattctctgttacctctgccaaatgtcttgacgaatcaaccct 137  Q
    |||||||||||| |||||||  |||| | ||||||||||||||||   ||| |||| |   |||| || ||||||||||||||||||| | ||||||  |    
T  5885290 cattactttcatcgttttccatccttatctgctactactgcatttttttcactttccagaactctcttgcctctgccaaatgtcttga-ggatcaacaat 5885388  T
Q  138 cattgttgcttcaattaaaaaccaatctca 167  Q
    || ||||||| |||||||||| ||||||||    
T  5885389 cactgttgctccaattaaaaaacaatctca 5885418  T

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Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 195 - 255
Target Start/End: Original strand, 5894366 - 5894426
Alignment:
Q  195 cttgctgcaattggagcggtgtaacttttgacaatgaatgacatgttatgggcctagacct 255  Q
    |||||||||||||||| |||||||||| |||||||||  |||||||||| ||||| |||||    
T  5894366 cttgctgcaattggagtggtgtaacttgtgacaatgagggacatgttattggccttgacct 5894426  T

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Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 359 - 434
Target Start/End: Complemental strand, 5552459 - 5552384
Alignment:
Q  359 cctctgcaattcttcaaacattcaggtgcttaatctttccattaataagatttatggaacaataccgacatgttta 434  Q
    |||||||||| |||||||  |||| |||||| |||||||||||||||| |||| ||||||||| ||  ||||||||    
T  5552459 cctctgcaatgcttcaaatcttcaagtgcttgatctttccattaataaaatttctggaacaatgcccgcatgttta 5552384  T

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Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 26 - 125
Target Start/End: Complemental strand, 5859301 - 5859202
Alignment:
Q  26 caatgaaaattgcattactttcattgttttcctgccttctatgctactactgcatttacatcagtttcaaattctctgttacctctgccaaatgtcttga 125  Q
    |||||| |||| || ||||||||||||||||||  ||||| | || ||||||||| || |||| |||| || ||||| |  |||||||||||||||||||    
T  5859301 caatgagaattacaatactttcattgttttcctttcttctcttctgctactgcatatatatcactttccaaatctctttagcctctgccaaatgtcttga 5859202  T

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Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 178 - 227
Target Start/End: Complemental strand, 5554271 - 5554222
Alignment:
Q  178 atggaatcaaaacattccttgctgcaattggagcggtgtaacttttgaca 227  Q
    ||||||||||| |||  ||||||||||||||||||||||||||| |||||    
T  5554271 atggaatcaaagcatagcttgctgcaattggagcggtgtaacttgtgaca 5554222  T

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Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 353 - 434
Target Start/End: Original strand, 5853910 - 5853991
Alignment:
Q  353 tcattccctctgcaattcttcaaacattcaggtgcttaatctttccattaataagatttatggaacaataccgacatgttta 434  Q
    ||||| |||||||||| |||||||  |||| || ||| |||||||||||||||| |||| ||||||||| ||  ||||||||    
T  5853910 tcatttcctctgcaatgcttcaaatcttcaagtacttgatctttccattaataaaatttttggaacaattcccgcatgttta 5853991  T

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Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 179 - 219
Target Start/End: Complemental strand, 5565624 - 5565584
Alignment:
Q  179 tggaatcaaaacattccttgctgcaattggagcggtgtaac 219  Q
    |||||||||| ||||||||||||||||||||| ||||||||    
T  5565624 tggaatcaaagcattccttgctgcaattggagtggtgtaac 5565584  T

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Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 348 - 405
Target Start/End: Original strand, 5540212 - 5540269
Alignment:
Q  348 atccttcattccctctgcaattcttcaaacattcaggtgcttaatctttccattaata 405  Q
    |||| |||||||||||||||| |||||||  |||| |||||| || ||||||||||||    
T  5540212 atccctcattccctctgcaatgcttcaaatcttcaagtgcttgatatttccattaata 5540269  T

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Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 348 - 421
Target Start/End: Original strand, 5572075 - 5572148
Alignment:
Q  348 atccttcattccctctgcaattcttcaaacattcaggtgcttaatctttccattaataagatttatggaacaat 421  Q
    |||| ||| |||||||||||| |||||||  |||| |||||| || ||||||||||||  |||| |||||||||    
T  5572075 atccctcaatccctctgcaatgcttcaaatcttcaagtgcttgatatttccattaatagcatttctggaacaat 5572148  T

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Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 257 - 322
Target Start/End: Original strand, 5895881 - 5895946
Alignment:
Q  257 agtatttagatttctcaaccgttaaattttctgctatcccacaatatattggtaattacatgtctt 322  Q
    ||||||| |||| |||||||  |||||| |||| |||||||||  |||||||||||||| ||||||    
T  5895881 agtatttggattactcaaccaataaattctctgttatcccacatgatattggtaattacttgtctt 5895946  T

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Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 179 - 255
Target Start/End: Complemental strand, 5560070 - 5559994
Alignment:
Q  179 tggaatcaaaacattccttgctgcaattggagcggtgtaacttttgacaatgaatgacatgttatgggcctagacct 255  Q
    |||||||||| || | |||||||||||||||| ||||| || | ||||| |||  |||||||||| ||||| |||||    
T  5560070 tggaatcaaagcactgcttgctgcaattggaggggtgttacatgtgacattgagggacatgttattggccttgacct 5559994  T

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Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 107 - 167
Target Start/End: Complemental strand, 5560165 - 5560106
Alignment:
Q  107 cctctgccaaatgtcttgacgaatcaaccctcattgttgcttcaattaaaaaccaatctca 167  Q
    ||||| ||||||||||||| || |||||  |||||||||| ||||||||||| ||||||||    
T  5560165 cctctaccaaatgtcttgagga-tcaacaatcattgttgcatcaattaaaaaacaatctca 5560106  T

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Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 357 - 421
Target Start/End: Original strand, 5584291 - 5584355
Alignment:
Q  357 tccctctgcaattcttcaaacattcaggtgcttaatctttccattaataagatttatggaacaat 421  Q
    |||||||||||| |||||||  |||| |||||| || ||||||||||||  |||| |||||||||    
T  5584291 tccctctgcaatgcttcaaatcttcaagtgcttgatatttccattaatagcatttctggaacaat 5584355  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 178 - 243
Target Start/End: Complemental strand, 1486311 - 1486246
Alignment:
Q  178 atggaatcaaaacattccttgctgcaattggagcggtgtaacttttgacaatgaatgacatgttat 243  Q
    ||||||| |||||| | |||||||||||||||| ||||| |||| |||||||||  ||||||||||    
T  1486311 atggaataaaaacactacttgctgcaattggagtggtgttacttgtgacaatgagggacatgttat 1486246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 33 - 167
Target Start/End: Complemental strand, 23268652 - 23268519
Alignment:
Q  33 aattgcattactttcattgttttcctgccttctatgctactactgcatttacatcagtttcaaattctctgttacctctgccaaatgtcttgacgaatca 132  Q
    |||| ||||||||||||||||||||| |||| | ||| ||||||||||||   ||  |||| ||   ||| || ||||||| ||||||||||| | ||||    
T  23268652 aattacattactttcattgttttccttccttttctgccactactgcatttttttctttttccaaacttctctttcctctgctaaatgtcttga-ggatca 23268554  T
Q  133 accctcattgttgcttcaattaaaaaccaatctca 167  Q
    ||   |  |||||||||||||||||| ||||||||    
T  23268553 acgaactctgttgcttcaattaaaaaacaatctca 23268519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0454 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0454
Description:

Target: scaffold0454; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 195 - 243
Target Start/End: Complemental strand, 1479 - 1431
Alignment:
Q  195 cttgctgcaattggagcggtgtaacttttgacaatgaatgacatgttat 243  Q
    |||||||||||||||| ||||| |||| |||||||||  ||||||||||    
T  1479 cttgctgcaattggagtggtgttacttgtgacaatgagggacatgttat 1431  T

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