View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17793_low_24 (Length: 445)
Name: NF17793_low_24
Description: NF17793
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17793_low_24 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 367; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 11 - 429
Target Start/End: Original strand, 9847806 - 9848224
Alignment:
| Q |
11 |
agaacctgtgagacgttgaactaggctcatgaattcacttggtgtggtgtggattatctttggggagaccatgtaaatgataaccggtaggcgaggttga |
110 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||| |
|
|
| T |
9847806 |
agaaccggtgagacgttgaactaggctcatgaattcacttggtgtggtgtggattatctttggagagaccatgtaaatgatgaccggtaggcgaggttgg |
9847905 |
T |
|
| Q |
111 |
gcttgcggggctaacggtggttttttgatcttatgagagtttttatttatccttagaggcgtaggacgaggtccttgtagctggtgtcctctttgaattg |
210 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||| ||||| |||||||||||||| ||||||||||||||||||| |
|
|
| T |
9847906 |
gcttgcggggctaacggtggtttttttatcttatgagagtttttgtttatccttagaggtgtagggcgaggtccttgtagttggtgtcctctttgaattg |
9848005 |
T |
|
| Q |
211 |
gtgatcttccataggtagtatcgttagggaagttcatattgctaaacaattaacaagaattaaaaggtgtgggaaaatgacgatgagaataaaccgacgt |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||| || |
|
|
| T |
9848006 |
gtgatcttccataggtagtatcgttagggaagttcatattgctaaacaattaacgagaattaaaaggagtgggaaaatgacgatgagaataaaccgatgt |
9848105 |
T |
|
| Q |
311 |
tgtaatgatttatagatattgacatgaaatatggacagagaagtggtcaatagtggataggaattattttattgcaagatatacattggtaaaataaggc |
410 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
9848106 |
tgtaatgatttatagatattgacatgaaatatggacagagaagtggtcaatagtggataggaattattttaatgcaagatatacattggtaaaataaggc |
9848205 |
T |
|
| Q |
411 |
tcctagtacggtaaattat |
429 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
9848206 |
tcctagtacggtaaattat |
9848224 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 11 - 247
Target Start/End: Original strand, 9855955 - 9856191
Alignment:
| Q |
11 |
agaacctgtgagacgttgaactaggctcatgaattcacttggtgtggtgtggattatctttggggagaccatgtaaatgataaccggtaggcgaggttga |
110 |
Q |
| |
|
|||||| ||||| | |||||| ||||||||||| |||||||||| ||||||||||||||||| || | | ||||||||||||||| | || ||| |
|
|
| T |
9855955 |
agaaccggtgaggctttgaacaaggctcatgaactcacttggtgatgtgtggattatctttggagattctgtataaatgataaccggttcgtgaatttgg |
9856054 |
T |
|
| Q |
111 |
gcttgcggggctaacggtggttttttgatcttatgagagtttttatttatccttagaggcgtaggacgag---gtccttgtagctggtgtcctctttgaa |
207 |
Q |
| |
|
|| || | ||||||||||| |||||||||||||||||||| ||||| ||||||| ||||| |||| |||||||||| ||| || |||||| |
|
|
| T |
9856055 |
atttttggacccaacggtggtttcttgatcttatgagagtttttgtttatggttagaggtgtagggcgaggaagtccttgtagttggagttctcttt--- |
9856151 |
T |
|
| Q |
208 |
ttggtgatcttccataggtagtatcgttagggaagttcat |
247 |
Q |
| |
|
|| |||||||| ||| || | ||| ||||||||||||||| |
|
|
| T |
9856152 |
tttgtgatctttcattggaaatattgttagggaagttcat |
9856191 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 310 - 399
Target Start/End: Original strand, 9856240 - 9856329
Alignment:
| Q |
310 |
ttgtaatgatttatagatattgacatgaaatatggacagagaagtggtcaatagtggataggaattattttattgcaagatatacattgg |
399 |
Q |
| |
|
|||| |||||||||| ||||||||||||| |||| | ||||||||||||| |||| |||| |||||||| ||||| |||| |||||| |
|
|
| T |
9856240 |
ttgtgatgatttatatatattgacatgaactatgtatggagaagtggtcaaaagtgactagggtttattttaatgcaaaatatgcattgg |
9856329 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University