View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17793_low_28 (Length: 432)
Name: NF17793_low_28
Description: NF17793
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17793_low_28 |
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Alignment Details
Target: chr5 (Bit Score: 382; Significance: 0; HSPs: 9)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 382; E-Value: 0
Query Start/End: Original strand, 12 - 418
Target Start/End: Original strand, 15839835 - 15840243
Alignment:
| Q |
12 |
catcatctaggacttgatcactcttttgatatggagtctgttatgtatccagccatattgccattacaacaacaaaggaagctgcagata--acatattc |
109 |
Q |
| |
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|||| |||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
15839835 |
catcttctaggacttgatcactcttttgataaggagtatgttatgtatccagccatattgccattacaacaacaaaggaagctgcagatataacatattc |
15839934 |
T |
|
| Q |
110 |
agataaccaagccatgcaacaaatctattccaatgccaactctgacaatggtgggtgcttcacaatgtttggatccagtttccttacctctttgttcctt |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15839935 |
agataaccaagccatgcaacaaatctattccaatgccaactctgacaatggtgggtgcttcacaatgtttggatccagtttccttacctctttgttcctt |
15840034 |
T |
|
| Q |
210 |
ggatttgcttttgtggcacttttgacctagcatcttagcttatcctttaattttggatacgcttttttaatttgtgtaatacatcacttcatgtgccatt |
309 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15840035 |
ggatttgcttttgtggcacttttgacctagcatcttagcttatcctttaattttggatacgcttttttaatttgtgtaatacatcacttcatgtgccatt |
15840134 |
T |
|
| Q |
310 |
tttcgttaatgcttattatgttaccatatccactactctcttataatcaagtacaataattacattatttatgcgcaaatccttcaaccaccttatcgca |
409 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15840135 |
tttcgttaatgcttattatgttaccatatccactactctcttataatcaagtacaaaaattacattatttatgcgcaaatccttcaaccaccttatcgca |
15840234 |
T |
|
| Q |
410 |
tatataatt |
418 |
Q |
| |
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||||||||| |
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| T |
15840235 |
tatataatt |
15840243 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 290; E-Value: 1e-162
Query Start/End: Original strand, 12 - 412
Target Start/End: Original strand, 15824158 - 15824561
Alignment:
| Q |
12 |
catcatctaggacttgatcactcttttgatatggagtctgttatgtatccagccatattgccattacaacaacaaaggaagctgcagataacatattcag |
111 |
Q |
| |
|
|||| ||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||| |||||| |
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| T |
15824158 |
catcttctaggacttgatcactctttcgataaggagtctgttatgtatccagccatattgccattacaacaa---aggaagctgcacataacagattcag |
15824254 |
T |
|
| Q |
112 |
ataaccaagccatgcaacaaatctattccaatgccaactctgacaatggtgggtgcttcacaatgtttggatccagtt------tccttacctctttgtt |
205 |
Q |
| |
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||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
15824255 |
ataaccaagccatacaacaaatctattccaatgcgaactctgacaatggtgggtgcttcacaatgtttggatccagttctggtctccttacctctttgtt |
15824354 |
T |
|
| Q |
206 |
ccttggatttgcttttgtggcacttttgacctagcatcttagcttatcctttaattttggatacgcttttttaatttgtgtaatacatcacttcatgtgc |
305 |
Q |
| |
|
||||||||||||||||||||| || |||| ||||||||||| |||||||||||||||||||| |||||||||||||||||||||| | ||||||||||| |
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|
| T |
15824355 |
ccttggatttgcttttgtggctctcttgaactagcatcttaaattatcctttaattttggatatgcttttttaatttgtgtaatactttacttcatgtgc |
15824454 |
T |
|
| Q |
306 |
catttttcgttaatgcttattatgttaccatatccactactctcttataatcaagtacaataattacattatttatgcgcaaatccttcaaccaccttat |
405 |
Q |
| |
|
||||||||||||||||| |||||||||| ||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
15824455 |
catttttcgttaatgctaattatgttacggtatccactactctcttataatgaagtacaaaaattacattatttatgcgcaaatccttcaaccaccttat |
15824554 |
T |
|
| Q |
406 |
cgcatat |
412 |
Q |
| |
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||||||| |
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|
| T |
15824555 |
cgcatat |
15824561 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 18 - 141
Target Start/End: Original strand, 15724062 - 15724182
Alignment:
| Q |
18 |
ctaggacttgatcactcttttgatatggagtctgttatgtatccagccatattgccattacaacaacaaaggaagctgcagataacatattcagataacc |
117 |
Q |
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|
||||||||||||||||||| ||||| ||||||| ||||||| ||| | |||||||||| |||||||||||| ||||||||||| | ||||||||| |
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| T |
15724062 |
ctaggacttgatcactcttctgataaggagtctattatgtacccaacaatattgccat---ggcaacaaaggaaggtgcagataacagaatcagataact |
15724158 |
T |
|
| Q |
118 |
aagccatgcaacaaatctattcca |
141 |
Q |
| |
|
|||||| |||||| ||||||||| |
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|
| T |
15724159 |
tagccatacaacaactctattcca |
15724182 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 18 - 136
Target Start/End: Original strand, 15717664 - 15717779
Alignment:
| Q |
18 |
ctaggacttgatcactcttttgatatggagtctgttatgtatccagccatattgccattacaacaacaaaggaagctgcagataacatattcagataacc |
117 |
Q |
| |
|
||||||||||||||||||| |||| |||||||| ||||||| ||| | ||| ||||||| || |||| |||| ||||||||||| ||||||||||| |
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| T |
15717664 |
ctaggacttgatcactcttctgatgtggagtctattatgtacccaacaatagtgccatt---gcatcaaaagaaggtgcagataacagtttcagataacc |
15717760 |
T |
|
| Q |
118 |
aagccatgcaacaaatcta |
136 |
Q |
| |
|
||||||| |||||| |||| |
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|
| T |
15717761 |
aagccatacaacaactcta |
15717779 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 116
Target Start/End: Original strand, 15721552 - 15721647
Alignment:
| Q |
18 |
ctaggacttgatcactcttttgatatggagtctgttatgtatccagccatattgccattacaacaacaaaggaagctgcagataacatattcagataac |
116 |
Q |
| |
|
||||||||||||||||| | |||| ||||||| ||||||| ||| | ||| ||||||| |||||||||||| ||||||||||| |||||||||| |
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| T |
15721552 |
ctaggacttgatcactcgtctgatgaggagtctattatgtacccaacaatagtgccatt---gcaacaaaggaaggtgcagataacagtttcagataac |
15721647 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 276 - 324
Target Start/End: Original strand, 15724324 - 15724372
Alignment:
| Q |
276 |
ttaatttgtgtaatacatcacttcatgtgccatttttcgttaatgctta |
324 |
Q |
| |
|
|||||||||||||||| | ||||| ||||||||||| || ||||||||| |
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| T |
15724324 |
ttaatttgtgtaatactttacttcgtgtgccattttccggtaatgctta |
15724372 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 18 - 58
Target Start/End: Original strand, 15730280 - 15730320
Alignment:
| Q |
18 |
ctaggacttgatcactcttttgatatggagtctgttatgta |
58 |
Q |
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||||||||||||||||||| ||||| ||||||| ||||||| |
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| T |
15730280 |
ctaggacttgatcactcttctgataaggagtctattatgta |
15730320 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 18 - 58
Target Start/End: Original strand, 15814146 - 15814186
Alignment:
| Q |
18 |
ctaggacttgatcactcttttgatatggagtctgttatgta |
58 |
Q |
| |
|
||||||||||||||||||| ||||| ||||||| ||||||| |
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|
| T |
15814146 |
ctaggacttgatcactcttctgataaggagtctattatgta |
15814186 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 19 - 141
Target Start/End: Original strand, 15819799 - 15819918
Alignment:
| Q |
19 |
taggacttgatcactcttttgatatggagtctgttatgtatccagccatattgccattacaacaacaaaggaagctgcagataacatattcagataacca |
118 |
Q |
| |
|
|||||||||| || |||| ||||| ||||| ||||||||||| | |||||||||| ||| ||| | |||| ||||||||||| ||||||||||| |
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|
| T |
15819799 |
taggacttgaacattcttctgatagcaagtctattatgtatccaactatattgccatcacagcaaaa---gaaggtgcagataacagattcagataactt |
15819895 |
T |
|
| Q |
119 |
agccatgcaacaaatctattcca |
141 |
Q |
| |
|
||| || ||| || ||||||||| |
|
|
| T |
15819896 |
agcaatccaaaaactctattcca |
15819918 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 336 - 399
Target Start/End: Original strand, 38768857 - 38768920
Alignment:
| Q |
336 |
tatccactactctcttataatcaagtacaataattacattatttatgcgcaaatccttcaacca |
399 |
Q |
| |
|
||||||| ||| ||||| |||||||| || |||||||||||||||| |||| ||||||||||| |
|
|
| T |
38768857 |
tatccaccactttcttagaatcaagttaaaaaattacattatttatgtgcaagtccttcaacca |
38768920 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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