View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17793_low_33 (Length: 423)
Name: NF17793_low_33
Description: NF17793
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17793_low_33 |
 | |
|
| [»] scaffold0070 (1 HSPs) |
| | |
|
| [»] scaffold0830 (1 HSPs) |
| | |
|
Alignment Details
Target: chr8 (Bit Score: 303; Significance: 1e-170; HSPs: 21)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 11 - 406
Target Start/End: Original strand, 24912753 - 24913150
Alignment:
| Q |
11 |
gcaaaggttaaatataatgatagatgttgcatctgcattggaatatcttcatcatggttcttcaatgcatgtggttcattgtgatctaaagccttccaat |
110 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
24912753 |
gcaaaggttaaatataatgatagatgttgcatctgcattggaatatcttcatcttggttcttcaatgcctgtggttcattgtgatctaaagccttccaat |
24912852 |
T |
|
| Q |
111 |
gtcttgttggatgaaaatatggttgcacatgttagtgattttggtattgcaaagctcatggatgaaggacaatctcaaactcatacacaaactttggcta |
210 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||| |||| |
|
|
| T |
24912853 |
gtcttgttggatgaaaatatggttgcacatgttagtgattttggtattgcaaagctcatggatgaaggacaatctaaaactcatacacagactttagcta |
24912952 |
T |
|
| Q |
211 |
ctgttggatacctcgcaccaggtcatttcttctctttaagtaacattttattctgcgttttgagtcctaaccaatctatttgattttgttaac---nnnn |
307 |
Q |
| |
|
||||||||||||| ||||||||||| |||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24912953 |
ctgttggataccttgcaccaggtca-ttcttctctttacgtaacattttattctgtgttttgagtcctaaccaatctatttgattttgttaacaaaacaa |
24913051 |
T |
|
| Q |
308 |
nnnnnntctacgacacacacatcagtaatcaacatgttatattagtaattaatgtgtctaagatttatttttaagaatattttataaatagtaataact |
406 |
Q |
| |
|
||||||||||| ||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
24913052 |
aaaaaatctacgacacaaacatctgtaatcaacatgttatattagtaattaatgtgtctaagctttatttttaagaatattttataaatagtaataact |
24913150 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 11 - 259
Target Start/End: Complemental strand, 25490588 - 25490340
Alignment:
| Q |
11 |
gcaaaggttaaatataatgatagatgttgcatctgcattggaatatcttcatcatggttcttcaatgcatgtggttcattgtgatctaaagccttccaat |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
25490588 |
gcaaaggttaaatataatgatagatgttgcatctgcattggaatatcttcatcatggttcttcaatgcctgtggttcattgtgatctaaagccttccaat |
25490489 |
T |
|
| Q |
111 |
gtcttgttggatgaaaatatggttgcacatgttagtgattttggtattgcaaagctcatggatgaaggacaatctcaaactcatacacaaactttggcta |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
25490488 |
gtcttgttggatgaaaatatggttgcacatgttagtgattttggtattgctaagctcatggatgaaggacaatctaaaactcatacacaaactttggcta |
25490389 |
T |
|
| Q |
211 |
ctgttggatacctcgcaccaggtcatttcttctctttaagtaacatttt |
259 |
Q |
| |
|
||||||||||||||||||||||||||||||| | |||| ||||||||| |
|
|
| T |
25490388 |
ctgttggatacctcgcaccaggtcatttcttttttttacttaacatttt |
25490340 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 11 - 247
Target Start/End: Complemental strand, 25695751 - 25695515
Alignment:
| Q |
11 |
gcaaaggttaaatataatgatagatgttgcatctgcattggaatatcttcatcatggttcttcaatgcatgtggttcattgtgatctaaagccttccaat |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| | |||||||||||||||||||||||||||||| |
|
|
| T |
25695751 |
gcaaaggttaaatataatgatagatgttgcatctgcattggaatatctccatcatggttcctcaataccagtggttcattgtgatctaaagccttccaat |
25695652 |
T |
|
| Q |
111 |
gtcttgttggatgaaaatatggttgcacatgttagtgattttggtattgcaaagctcatggatgaaggacaatctcaaactcatacacaaactttggcta |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
25695651 |
gtcttgttggatgaaaatatggttgcacatgttagtgattttggtattgcaaagctgatggatgaaggacaatctaaaactcatacacaaactttggcta |
25695552 |
T |
|
| Q |
211 |
ctgttggatacctcgcaccaggtcatttcttctcttt |
247 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
25695551 |
ctgttggatacctcgcaccaggtcatttcttttcttt |
25695515 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 11 - 299
Target Start/End: Complemental strand, 25453373 - 25453079
Alignment:
| Q |
11 |
gcaaaggttaaatataatgatagatgttgcatctgcattggaatatcttcatcatggttcttcaatgcatgtggttcattgtgatctaaagccttccaat |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||| |
|
|
| T |
25453373 |
gcaaaggttaaatataatgatagatgttgcatctgcattggaatatcttcatcatggttcttcaatgcctgtggttcattgtgatctaaagccttctaat |
25453274 |
T |
|
| Q |
111 |
gtcttgttggatgaaaatatggttgcacatgttagtgattttggtattgcaaagctcatggatgaaggacaatctcaaactcatacacaaactttggcta |
210 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||| | ||||||||||| |||| |
|
|
| T |
25453273 |
gtcttgttggatgaaaatatggttgcacatgttagcgattttggtattgccaagctcatggatgaaggacaatctcaaacttacacacaaactttagcta |
25453174 |
T |
|
| Q |
211 |
ctgttggatacctcgcaccaggtcatttcttctctttaa----gtaacattttattc--tgcgttttgagtcctaaccaatctatttgattttgt |
299 |
Q |
| |
|
|| |||||||||| |||||||||||||| |||||||| | ||||||||| ||| | ||||| ||||||||||||||||||||||||||| |
|
|
| T |
25453173 |
ctattggataccttgcaccaggtcatttattctcttttacttcataacattttcttctttatgttttcagtcctaaccaatctatttgattttgt |
25453079 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 11 - 247
Target Start/End: Complemental strand, 25715584 - 25715348
Alignment:
| Q |
11 |
gcaaaggttaaatataatgatagatgttgcatctgcattggaatatcttcatcatggttcttcaatgcatgtggttcattgtgatctaaagccttccaat |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||| | |||||||||||||||||||||||||||||| |
|
|
| T |
25715584 |
gcaaaggttaaatataatgatagatgttgcatctgcattggaatatctccatcgtggttcttcaataccagtggttcattgtgatctaaagccttccaat |
25715485 |
T |
|
| Q |
111 |
gtcttgttggatgaaaatatggttgcacatgttagtgattttggtattgcaaagctcatggatgaaggacaatctcaaactcatacacaaactttggcta |
210 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25715484 |
gtcttgttggatgaaaatatggttgcacatgttagcgattttggtattgcaaagctcatggatgaaggacaatctcaaactcatacacaaactttggcta |
25715385 |
T |
|
| Q |
211 |
ctgttggatacctcgcaccaggtcatttcttctcttt |
247 |
Q |
| |
|
|| ||||||| || ||||||||||||||||||||||| |
|
|
| T |
25715384 |
ctattggatatcttgcaccaggtcatttcttctcttt |
25715348 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 12 - 247
Target Start/End: Complemental strand, 25323046 - 25322811
Alignment:
| Q |
12 |
caaaggttaaatataatgatagatgttgcatctgcattggaatatcttcatcatggttcttcaatgcatgtggttcattgtgatctaaagccttccaatg |
111 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||| |
|
|
| T |
25323046 |
caaaggttaaatataatgatagatgttgcatctgcattggaatatcttcatcatggttcttcaatacctgtggttcattgtgatctaaagccttccaatg |
25322947 |
T |
|
| Q |
112 |
tcttgttggatgaaaatatggttgcacatgttagtgattttggtattgcaaagctcatggatgaaggacaatctcaaactcatacacaaactttggctac |
211 |
Q |
| |
|
|||| |||||| |||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25322946 |
tcttattggataaaaatatggttgcacatgttagcgattttggtattgccaagctcatggatgaaggacaatctcaaactcatacacaaactttggctac |
25322847 |
T |
|
| Q |
212 |
tgttggatacctcgcaccaggtcatttcttctcttt |
247 |
Q |
| |
|
| ||||||| || ||||||||||||||||||||||| |
|
|
| T |
25322846 |
tattggatatcttgcaccaggtcatttcttctcttt |
25322811 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 12 - 247
Target Start/End: Complemental strand, 25686037 - 25685802
Alignment:
| Q |
12 |
caaaggttaaatataatgatagatgttgcatctgcattggaatatcttcatcatggttcttcaatgcatgtggttcattgtgatctaaagccttccaatg |
111 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||| |||||||||||||| |||| |
|
|
| T |
25686037 |
caaaggttaaatataatgatagatgttgcatctgcattggaatatcttcatcatggttcttcaatacctgtggttcattgcgatctaaagccttcgaatg |
25685938 |
T |
|
| Q |
112 |
tcttgttggatgaaaatatggttgcacatgttagtgattttggtattgcaaagctcatggatgaaggacaatctcaaactcatacacaaactttggctac |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25685937 |
tcttgttggatgaaaatatggttgcacatgttagcgattttggtattgccaagctcctggatgaaggacaatctcaaactcatacacaaactttggctac |
25685838 |
T |
|
| Q |
212 |
tgttggatacctcgcaccaggtcatttcttctcttt |
247 |
Q |
| |
|
| ||||||| || ||||||||||||||||||||||| |
|
|
| T |
25685837 |
tattggatatcttgcaccaggtcatttcttctcttt |
25685802 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 12 - 247
Target Start/End: Complemental strand, 25605027 - 25604792
Alignment:
| Q |
12 |
caaaggttaaatataatgatagatgttgcatctgcattggaatatcttcatcatggttcttcaatgcatgtggttcattgtgatctaaagccttccaatg |
111 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||| |||||||||||||| |||| |
|
|
| T |
25605027 |
caaaggttaaatataatgatagatgttgcatctgcattggaatatcttcatcatggttcttcaatacctgtggttcattgagatctaaagccttcaaatg |
25604928 |
T |
|
| Q |
112 |
tcttgttggatgaaaatatggttgcacatgttagtgattttggtattgcaaagctcatggatgaaggacaatctcaaactcatacacaaactttggctac |
211 |
Q |
| |
|
|||| |||||| |||||||||| ||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25604927 |
tcttattggataaaaatatggtagcacatgttagcgattttggtattgccaagctcatggatgaaggacaatctcaaactcatacacaaactttggctac |
25604828 |
T |
|
| Q |
212 |
tgttggatacctcgcaccaggtcatttcttctcttt |
247 |
Q |
| |
|
| ||||||| || ||||||||||||||||| ||||| |
|
|
| T |
25604827 |
tattggatatcttgcaccaggtcatttcttatcttt |
25604792 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 183; E-Value: 7e-99
Query Start/End: Original strand, 11 - 249
Target Start/End: Complemental strand, 25341371 - 25341133
Alignment:
| Q |
11 |
gcaaaggttaaatataatgatagatgttgcatctgcattggaatatcttcatcatggttcttcaatgcatgtggttcattgtgatctaaagccttccaat |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| | | ||||||||||| |||||||||||||| ||| |
|
|
| T |
25341371 |
gcaaaggttaaatataatgatagatgttgcatctgcattggaatatctccatcatggttcttcagtaccagtggttcattgcgatctaaagccttctaat |
25341272 |
T |
|
| Q |
111 |
gtcttgttggatgaaaatatggttgcacatgttagtgattttggtattgcaaagctcatggatgaaggacaatctcaaactcatacacaaactttggcta |
210 |
Q |
| |
|
||||| |||||||||||||||||||||||||| || |||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
25341271 |
gtcttattggatgaaaatatggttgcacatgtaagcgattttggtattgccaagctcatggatgaaggacaatctaaaactcatacacaaactttggcta |
25341172 |
T |
|
| Q |
211 |
ctgttggatacctcgcaccaggtcatttcttctctttaa |
249 |
Q |
| |
|
|| |||||||||| ||||||||||||||||||||||||| |
|
|
| T |
25341171 |
ctattggataccttgcaccaggtcatttcttctctttaa |
25341133 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #10
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 11 - 247
Target Start/End: Complemental strand, 23258595 - 23258359
Alignment:
| Q |
11 |
gcaaaggttaaatataatgatagatgttgcatctgcattggaatatcttcatcatggttcttcaatgcatgtggttcattgtgatctaaagccttccaat |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| | ||||||||||| |||||||| ||||| ||| |
|
|
| T |
23258595 |
gcaaaggttaaatataatgatagatgttgcatctgcattggaatatctccatcatggttcttcaatacccgtggttcattgcgatctaaaaccttctaat |
23258496 |
T |
|
| Q |
111 |
gtcttgttggatgaaaatatggttgcacatgttagtgattttggtattgcaaagctcatggatgaaggacaatctcaaactcatacacaaactttggcta |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||| |||| |
|
|
| T |
23258495 |
gtcttgttggatgaaaatatggttgcacatgttagtgattttggtatttcaaagctcatggatgaaggacaatctgaaactcatacacaaactttagcta |
23258396 |
T |
|
| Q |
211 |
ctgttggatacctcgcaccaggtcatttcttctcttt |
247 |
Q |
| |
|
|| |||||||||| ||||||||| |||| |||||||| |
|
|
| T |
23258395 |
ctcttggataccttgcaccaggtaatttgttctcttt |
23258359 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #11
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 11 - 249
Target Start/End: Complemental strand, 25570277 - 25570039
Alignment:
| Q |
11 |
gcaaaggttaaatataatgatagatgttgcatctgcattggaatatcttcatcatggttcttcaatgcatgtggttcattgtgatctaaagccttccaat |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||| |||||||||||||| |||||| |
|
|
| T |
25570277 |
gcaaaggttaaatataatgatagatgttgcatctgcattgaaatatcttcatcatggttcttcaatgcctgtggttcactgtgatctaaagccctccaat |
25570178 |
T |
|
| Q |
111 |
gtcttgttggatgaaaatatggttgcacatgttagtgattttggtattgcaaagctcatggatgaaggacaatctcaaactcatacacaaactttggcta |
210 |
Q |
| |
|
||| |||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||| |||||| ||||||||||||| ||||| |||| |
|
|
| T |
25570177 |
gtcatgttggatgaaaatatggttgcacgtgttagtgattttggtattgctaagctcatggatgaaggtcaatctaaaactcatacacagactttagcta |
25570078 |
T |
|
| Q |
211 |
ctgttggatacctcgcaccaggtcatttcttctctttaa |
249 |
Q |
| |
|
|| |||||||||| |||||| ||||||||||||| |||| |
|
|
| T |
25570077 |
ctattggataccttgcaccaagtcatttcttctcattaa |
25570039 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #12
Raw Score: 168; E-Value: 7e-90
Query Start/End: Original strand, 12 - 243
Target Start/End: Complemental strand, 25800668 - 25800437
Alignment:
| Q |
12 |
caaaggttaaatataatgatagatgttgcatctgcattggaatatcttcatcatggttcttcaatgcatgtggttcattgtgatctaaagccttccaatg |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| | |||||||| ||||||||||||||||| | ||||||||||| |||||||||||||| |||| |
|
|
| T |
25800668 |
caaaggttaaatataatgatagatgttgcatctgcagtagaatatctccatcatggttcttcaataccagtggttcattgcgatctaaagccttctaatg |
25800569 |
T |
|
| Q |
112 |
tcttgttggatgaaaatatggttgcacatgttagtgattttggtattgcaaagctcatggatgaaggacaatctcaaactcatacacaaactttggctac |
211 |
Q |
| |
|
|||| |||||||||||||||||||||||||| || |||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
25800568 |
tcttattggatgaaaatatggttgcacatgtaagcgattttggtattgccaagctcatggatgaaggacaatctaaaactcatacacaaactttggctac |
25800469 |
T |
|
| Q |
212 |
tgttggatacctcgcaccaggtcatttcttct |
243 |
Q |
| |
|
||||||||| || ||||||||| ||||||||| |
|
|
| T |
25800468 |
tgttggatatcttgcaccaggtaatttcttct |
25800437 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #13
Raw Score: 167; E-Value: 3e-89
Query Start/End: Original strand, 11 - 299
Target Start/End: Complemental strand, 25647403 - 25647109
Alignment:
| Q |
11 |
gcaaaggttaaatataatgatagatgttgcatctgcattggaatatcttcatcatggttcttcaatgcatgtggttcattgtgatctaaagccttccaat |
110 |
Q |
| |
|
||||||||||||||||||||||||||||||||| | |||||||||||| ||||||||||| ||||| | |||||||| || |||||||||||||| ||| |
|
|
| T |
25647403 |
gcaaaggttaaatataatgatagatgttgcatcagaattggaatatctccatcatggttcatcaataccagtggttcaatgagatctaaagccttcaaat |
25647304 |
T |
|
| Q |
111 |
gtcttgttggatgaaaatatggttgcacatgttagtgattttggtattgcaaagctcatggatgaaggacaatctcaaactcatacacaaactttggcta |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||| ||||||||||||| |||||||||| |
|
|
| T |
25647303 |
gtcttgttggatgaaaatatggttgcacatgttagtgattttggtattgctaagctcatgggtgaaggacaatctaaaactcatacacagactttggcta |
25647204 |
T |
|
| Q |
211 |
ctgttggatacctcgcaccaggtcatttcttctctttaa----gtaacattttattc--tgcgttttgagtcctaaccaatctatttgattttgt |
299 |
Q |
| |
|
|| ||||||| || ||||||||||||||||||| ||| | ||||||||| ||| | |||||| |||| |||||||| ||||||||||||| |
|
|
| T |
25647203 |
ctattggatatcttgcaccaggtcatttcttctgttttacttcttaacattttcttctttacgttttcagtcataaccaatttatttgattttgt |
25647109 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #14
Raw Score: 155; E-Value: 4e-82
Query Start/End: Original strand, 11 - 303
Target Start/End: Complemental strand, 25476052 - 25475754
Alignment:
| Q |
11 |
gcaaaggttaaatataatgatagatgttgcatctgcattggaatatcttcatcatggttcttcaatgcatgtggttcattgtgatctaaagccttccaat |
110 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||| | |||||||||||| |||||||||||||| ||| |
|
|
| T |
25476052 |
gcaaaggttgaatataatgatagatgttgcatctgcattggaatatctccatcatggttcttcaatacctgtggttcattgcgatctaaagccttctaat |
25475953 |
T |
|
| Q |
111 |
gtcttgttggatgaaaatatggttgcacatgttagtgattttggtattgcaaagctcatggatgaaggacaatctcaaactcatacacaaactttggcta |
210 |
Q |
| |
|
||| |||||||| ||||||||||||||||||||||||||||||||||||| |||||||| |||||||| | |||| || |||||||||||||| ||| |
|
|
| T |
25475952 |
gtcatgttggataaaaatatggttgcacatgttagtgattttggtattgccaagctcatcgatgaaggccgatctaaatgccatacacaaacttttccta |
25475853 |
T |
|
| Q |
211 |
ctgttggatacctcgcaccaggtcatttcttctctttaa----gtaacattttattc--tgcgttttgagtcctaaccaatctatttgattttgttaac |
303 |
Q |
| |
|
|| |||||||| | ||||||||||||||||||||||| | |||||||||| ||| | || || ||||| ||||||||||||||||| ||||||| |
|
|
| T |
25475852 |
ctattggatacattgcaccaggtcatttcttctcttttactttgtaacattttcttctttatgtctttagtcccaaccaatctatttgattctgttaac |
25475754 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #15
Raw Score: 151; E-Value: 9e-80
Query Start/End: Original strand, 11 - 241
Target Start/End: Original strand, 22900479 - 22900709
Alignment:
| Q |
11 |
gcaaaggttaaatataatgatagatgttgcatctgcattggaatatcttcatcatggttcttcaatgcatgtggttcattgtgatctaaagccttccaat |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||| | |||||| |||||||||||||||||| ||| |
|
|
| T |
22900479 |
gcaaaggttaaatataatgatagatgttgcatatgcattggaatatctccatcatggttcttcaatacctgtggtccattgtgatctaaagcctagtaat |
22900578 |
T |
|
| Q |
111 |
gtcttgttggatgaaaatatggttgcacatgttagtgattttggtattgcaaagctcatggatgaaggacaatctcaaactcatacacaaactttggcta |
210 |
Q |
| |
|
|||||| |||| ||| |||||||||||||||||||||||||||||||||| || ||||||||||||||||||||| ||||||||||| | |||||||||| |
|
|
| T |
22900579 |
gtcttgctggacgaagatatggttgcacatgttagtgattttggtattgccaaactcatggatgaaggacaatctaaaactcatacagagactttggcta |
22900678 |
T |
|
| Q |
211 |
ctgttggatacctcgcaccaggtcatttctt |
241 |
Q |
| |
|
|| ||||||| || ||||||||| ||||||| |
|
|
| T |
22900679 |
ctattggatatcttgcaccaggtaatttctt |
22900709 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #16
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 81 - 249
Target Start/End: Original strand, 24875169 - 24875337
Alignment:
| Q |
81 |
gtggttcattgtgatctaaagccttccaatgtcttgttggatgaaaatatggttgcacatgttagtgattttggtattgcaaagctcatggatgaaggac |
180 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
24875169 |
gtggttcattgtgatctaaagccttccaatgtcttgttggatgaaaatatggttgcacatgttagcgattttggtattgcaaagctcatggatgaaggac |
24875268 |
T |
|
| Q |
181 |
aatctcaaactcatacacaaactttggctactgttggatacctcgcaccaggtcatttcttctctttaa |
249 |
Q |
| |
|
||||| |||||||||||||||||||||||||| |||||||||| |||||| |||||||||||||||||| |
|
|
| T |
24875269 |
aatctgaaactcatacacaaactttggctactattggataccttgcaccaagtcatttcttctctttaa |
24875337 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #17
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 329 - 364
Target Start/End: Complemental strand, 25453053 - 25453018
Alignment:
| Q |
329 |
tcagtaatcaacatgttatattagtaattaatgtgt |
364 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||| |
|
|
| T |
25453053 |
tcagtaatcaacatgttatatttgtaattaatgtgt |
25453018 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 322 - 364
Target Start/End: Complemental strand, 25322735 - 25322693
Alignment:
| Q |
322 |
acacacatcagtaatcaacatgttatattagtaattaatgtgt |
364 |
Q |
| |
|
|||||||| ||| || ||||||||||||||||||||||||||| |
|
|
| T |
25322735 |
acacacattagtcataaacatgttatattagtaattaatgtgt |
25322693 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 11 - 44
Target Start/End: Original strand, 24875126 - 24875159
Alignment:
| Q |
11 |
gcaaaggttaaatataatgatagatgttgcatct |
44 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||| |
|
|
| T |
24875126 |
gcaaaggttaaatataatgatagatgctgcatct |
24875159 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 335 - 364
Target Start/End: Complemental strand, 25490268 - 25490239
Alignment:
| Q |
335 |
atcaacatgttatattagtaattaatgtgt |
364 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
25490268 |
atcaacatgttatattagtaattaatgtgt |
25490239 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 335 - 364
Target Start/End: Complemental strand, 25715259 - 25715230
Alignment:
| Q |
335 |
atcaacatgttatattagtaattaatgtgt |
364 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
25715259 |
atcaacatgttatattagtaattaatgtgt |
25715230 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0070 (Bit Score: 273; Significance: 1e-152; HSPs: 1)
Name: scaffold0070
Description:
Target: scaffold0070; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 11 - 403
Target Start/End: Original strand, 16713 - 17118
Alignment:
| Q |
11 |
gcaaaggttaaatataatgatagatgttgcatctgcattggaatatcttcatcatggttcttcaatgcatgtggttcattgtgatctaaagccttccaat |
110 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
16713 |
gcaaaggttaaatataatgatagaagttgcatctgcattggaatatcttcatcatggttcttcaatgcctgtggttcattgtgatctaaagccttccaat |
16812 |
T |
|
| Q |
111 |
gtcttgttggatgaaaatatggttgcacatgttagtgattttggtattgcaaagctcatggatgaaggacaatctcaaactcatacacaaactttggcta |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||| ||||||||||||| ||||| |||| |
|
|
| T |
16813 |
gtcttgttggatgaaaatatggttgcacatgttagtgattttggtattgctaagctcatggatgaaggtcaatctaaaactcatacacagactttagcta |
16912 |
T |
|
| Q |
211 |
ctgttggatacctcgcaccaggtcatttcttctctttaagtaacattttattctgcgttttgagtcctaaccaatctatttgattttgttaac-nnnnnn |
309 |
Q |
| |
|
||||||||||||| ||||||||||| ||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
16913 |
ctgttggataccttgcaccaggtca-ttcttctctttaagtaacattttattctgagttttaagtcctaaccaatctatttgattttgttaacaaaaaaa |
17011 |
T |
|
| Q |
310 |
nnnntctacgacacacacatcagtaatcaacatgttatattagtaattaatgt-------------gtctaagatttatttttaagaatattttataaat |
396 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||| |
|
|
| T |
17012 |
aaaatctacgacacacacatcagtaatcaacatgttatattagtaattaatgtgtacatggtatgggtctaagctttatttttaagaatattttataaat |
17111 |
T |
|
| Q |
397 |
agtaata |
403 |
Q |
| |
|
||||||| |
|
|
| T |
17112 |
agtaata |
17118 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 181; Significance: 1e-97; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 15 - 247
Target Start/End: Complemental strand, 10324240 - 10324008
Alignment:
| Q |
15 |
aggttaaatataatgatagatgttgcatctgcattggaatatcttcatcatggttcttcaatgcatgtggttcattgtgatctaaagccttccaatgtct |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| | |||||||||||||||||||||||||| ||||||| |
|
|
| T |
10324240 |
aggttaaatataatgatagatgttgcatctgcattggaatatctccatcatggttcttcaatacccgtggttcattgtgatctaaagccttctaatgtct |
10324141 |
T |
|
| Q |
115 |
tgttggatgaaaatatggttgcacatgttagtgattttggtattgcaaagctcatggatgaaggacaatctcaaactcatacacaaactttggctactgt |
214 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||| ||||||||||||| ||||| |||||| | |
|
|
| T |
10324140 |
tgttggatgaaaatatggttgcacatgttagcgattttggtattgccaagctcatggatgaaggacaatcaaaaactcatacacagactttagctactat |
10324041 |
T |
|
| Q |
215 |
tggatacctcgcaccaggtcatttcttctcttt |
247 |
Q |
| |
|
||||||||| ||||||||||||||||||||||| |
|
|
| T |
10324040 |
tggataccttgcaccaggtcatttcttctcttt |
10324008 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0830 (Bit Score: 172; Significance: 3e-92; HSPs: 1)
Name: scaffold0830
Description:
Target: scaffold0830; HSP #1
Raw Score: 172; E-Value: 3e-92
Query Start/End: Original strand, 11 - 246
Target Start/End: Original strand, 4199 - 4434
Alignment:
| Q |
11 |
gcaaaggttaaatataatgatagatgttgcatctgcattggaatatcttcatcatggttcttcaatgcatgtggttcattgtgatctaaagccttccaat |
110 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||| | |||||||||||| |||||||||||||| ||| |
|
|
| T |
4199 |
gcaaaggttaaatataatgatagatgttgcatcagcattggaatatctacatcatggttcttcaatacctgtggttcattgagatctaaagccttcaaat |
4298 |
T |
|
| Q |
111 |
gtcttgttggatgaaaatatggttgcacatgttagtgattttggtattgcaaagctcatggatgaaggacaatctcaaactcatacacaaactttggcta |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||| ||| |||||||||||||||||||||| | |
|
|
| T |
4299 |
gtcttgttggatgaaaatatggttgcacatgttagtgattttggtattgccaagctcatggacgaaggacattctaaaactcatacacaaactttggcaa |
4398 |
T |
|
| Q |
211 |
ctgttggatacctcgcaccaggtcatttcttctctt |
246 |
Q |
| |
|
|| | |||||||| ||||||||| ||||||| |||| |
|
|
| T |
4399 |
ctatcggataccttgcaccaggtaatttcttttctt |
4434 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 112; Significance: 2e-56; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 23 - 246
Target Start/End: Complemental strand, 5080129 - 5079906
Alignment:
| Q |
23 |
tataatgatagatgttgcatctgcattggaatatcttcatcatggttcttcaatgcatgtggttcattgtgatctaaagccttccaatgtcttgttggat |
122 |
Q |
| |
|
||||||||||||||| |||||||||||||| ||||||||||||||||||||||| | ||||||||||||||| | |||||| |||||| || ||||| |
|
|
| T |
5080129 |
tataatgatagatgtggcatctgcattggagtatcttcatcatggttcttcaataccagtggttcattgtgatttgaagcctagcaatgtgttactggat |
5080030 |
T |
|
| Q |
123 |
gaaaatatggttgcacatgttagtgattttggtattgcaaagctcatggatgaaggacaatctcaaactcatacacaaactttggctactgttggatacc |
222 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||| |||||||| ||||||| ||||||||| || ||||||| || ||||| ||||| |||| || |
|
|
| T |
5080029 |
gaaaatatggttgcacatgttagtgattttgggatttcaaagctcttggatgatggacaatctaaagctcatactcagactttagctacaattggttatg |
5079930 |
T |
|
| Q |
223 |
tcgcaccaggtcatttcttctctt |
246 |
Q |
| |
|
| ||||||||| |||||||||||| |
|
|
| T |
5079929 |
ttgcaccaggtaatttcttctctt |
5079906 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 11 - 197
Target Start/End: Original strand, 5119392 - 5119578
Alignment:
| Q |
11 |
gcaaaggttaaatataatgatagatgttgcatctgcattggaatatcttcatcatggttcttcaatgcatgtggttcattgtgatctaaagccttccaat |
110 |
Q |
| |
|
||||||||| || |||||||||||||| |||||||||||||| ||||||||||||||||||||||| | ||||||||||||||| | |||||| ||| |
|
|
| T |
5119392 |
gcaaaggttgaacataatgatagatgtggcatctgcattggagtatcttcatcatggttcttcaataccagtggttcattgtgatttgaagcctagtaat |
5119491 |
T |
|
| Q |
111 |
gtcttgttggatgaaaatatggttgcacatgttagtgattttggtattgcaaagctcatggatgaaggacaatctcaaactcataca |
197 |
Q |
| |
|
|| ||| |||||||| |||||||||||||||||||||||||||| ||| | |||||| |||||||||||||||| ||||||||||| |
|
|
| T |
5119492 |
gtgttgctggatgaagatatggttgcacatgttagtgattttgggatttccaagctcttggatgaaggacaatcaaaaactcataca |
5119578 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 11 - 197
Target Start/End: Original strand, 5101833 - 5102019
Alignment:
| Q |
11 |
gcaaaggttaaatataatgatagatgttgcatctgcattggaatatcttcatcatggttcttcaatgcatgtggttcattgtgatctaaagccttccaat |
110 |
Q |
| |
|
||||||||| || |||||||||||||| ||||| |||||||| ||||| ||||||||||||| ||| | |||||||||||||| | |||||| | ||| |
|
|
| T |
5101833 |
gcaaaggttgaacataatgatagatgtggcatcagcattggagtatctccatcatggttctttaataccagtggttcattgtgacttgaagcctgctaat |
5101932 |
T |
|
| Q |
111 |
gtcttgttggatgaaaatatggttgcacatgttagtgattttggtattgcaaagctcatggatgaaggacaatctcaaactcataca |
197 |
Q |
| |
|
|| || ||||||||||||||| |||||||||||||||||||||| ||| | |||||| |||||||||||||||| ||||||||||| |
|
|
| T |
5101933 |
gtgttattggatgaaaatatgattgcacatgttagtgattttgggatttccaagctcttggatgaaggacaatcaaaaactcataca |
5102019 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 91; Significance: 6e-44; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 11 - 181
Target Start/End: Original strand, 16886114 - 16886284
Alignment:
| Q |
11 |
gcaaaggttaaatataatgatagatgttgcatctgcattggaatatcttcatcatggttcttcaatgcatgtggttcattgtgatctaaagccttccaat |
110 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||| ||||| ||||||||||||||||| | ||||||||||||||| | |||||| ||| |
|
|
| T |
16886114 |
gcaaaggttgaatataatgatagatgttgcatctgcattggagtatctccatcatggttcttcaataccagtggttcattgtgatttgaagcctagtaat |
16886213 |
T |
|
| Q |
111 |
gtcttgttggatgaaaatatggttgcacatgttagtgattttggtattgcaaagctcatggatgaaggaca |
181 |
Q |
| |
|
|| || | ||||||||||||||||||||||| ||||||||||| ||| | |||||| ||||||||||||| |
|
|
| T |
16886214 |
gtgttactagatgaaaatatggttgcacatgtcagtgattttggaatttctaagctcttggatgaaggaca |
16886284 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 75; Significance: 2e-34; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 11 - 197
Target Start/End: Complemental strand, 14412452 - 14412266
Alignment:
| Q |
11 |
gcaaaggttaaatataatgatagatgttgcatctgcattggaatatcttcatcatggttcttcaatgcatgtggttcattgtgatctaaagccttccaat |
110 |
Q |
| |
|
||||||||| || |||||||||||||| |||||||||||||| ||||| ||||||||||||||||| | |||||||||||||| | |||||| ||| |
|
|
| T |
14412452 |
gcaaaggttgaacataatgatagatgtggcatctgcattggagtatctccatcatggttcttcaataccagtggttcattgtgacttgaagcctagtaat |
14412353 |
T |
|
| Q |
111 |
gtcttgttggatgaaaatatggttgcacatgttagtgattttggtattgcaaagctcatggatgaaggacaatctcaaactcataca |
197 |
Q |
| |
|
|| || | |||||| |||| |||||||||| ||||||||||| ||| | |||||| |||||||||||||||| ||||||||||| |
|
|
| T |
14412352 |
gtgttactagatgaagctatgattgcacatgtgagtgattttggcatttccaagctcttggatgaaggacaatcaaaaactcataca |
14412266 |
T |
|
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