View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17793_low_35 (Length: 414)
Name: NF17793_low_35
Description: NF17793
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17793_low_35 |
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Alignment Details
Target: chr4 (Bit Score: 48; Significance: 3e-18; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 303 - 362
Target Start/End: Original strand, 4006086 - 4006145
Alignment:
| Q |
303 |
aaggattccaaacaaggtaattgttcattgaaaagctaagtatatcgcttctcaaatata |
362 |
Q |
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| T |
4006086 |
aaggtttccaaacaaggtaattgttcattgaaaagttaagtatatcgcttctccaatata |
4006145 |
T |
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Target: chr4; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 211 - 320
Target Start/End: Original strand, 4005967 - 4006076
Alignment:
| Q |
211 |
atattgccaaggtttttgaactgtgcaattacaaaagaagcactgtttttcaatattggattttgctaactattgctttatagacatcgtttaaggattc |
310 |
Q |
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| T |
4005967 |
atattgctaaggttttcgaactgtgcaattatgacagaagcgttgtcatttaatagcggattttgctaactagtgctctaaagacatcgtttaaggtttc |
4006066 |
T |
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| Q |
311 |
caaacaaggt |
320 |
Q |
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| T |
4006067 |
caaacaaggt |
4006076 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 294 - 347
Target Start/End: Complemental strand, 17132723 - 17132670
Alignment:
| Q |
294 |
acatcgtttaaggattccaaacaaggtaattgttcattgaaaagctaagtatat |
347 |
Q |
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| T |
17132723 |
acattgtttaaagtttccaaagaaggtaattattgattgaaaagctaagtatat |
17132670 |
T |
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