View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17793_low_38 (Length: 405)
Name: NF17793_low_38
Description: NF17793
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17793_low_38 |
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Alignment Details
Target: chr3 (Bit Score: 333; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 18 - 362
Target Start/End: Complemental strand, 19378768 - 19378424
Alignment:
| Q |
18 |
aaatgtatctatctttcattacaagacaaatatgcaatatgcataatgattctcattcatctttctttgaaatatcgcaatgagtttcaatagaagaatg |
117 |
Q |
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| T |
19378768 |
aaatgtatctatctgtcattacaagacaaatatgcaatctgcataatgattctcattcatctttctttgaaatatcgcaatgagtttcaatagaagaatg |
19378669 |
T |
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| Q |
118 |
ataatggtggttctctttcatcattatcacaagaaagttgagaattaacataatcttcagtttgattgagttcttgaagatcacccttgttggggtcaca |
217 |
Q |
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| T |
19378668 |
ataatggtggttctctttcatcattatcacaagaaagttgagaatcaacataatcttcagtttgattgagttcttgaagatcacccttgttggggtcaca |
19378569 |
T |
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| Q |
218 |
aaattgtgtgattgactttgcaacatcctttctgtttcatattgtattgtcgcatttaatcaatattgaaacaatgaagctggcatttgcttgactcatc |
317 |
Q |
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| T |
19378568 |
aaattgtgtgattgactttgcaacatcctttctgtttcatattgtattgtcgcatttaatcaatattgaaacaatgaagctggcatttgcttgactcatc |
19378469 |
T |
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| Q |
318 |
agataatttcaaactagactagtcattttggatcgacattatgat |
362 |
Q |
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| T |
19378468 |
agataatttcaaactagactagtcattttggatcgacattatgat |
19378424 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 206 - 359
Target Start/End: Complemental strand, 18018691 - 18018522
Alignment:
| Q |
206 |
gttggggtcacaaaattgtgtgattgactt-tgcaacatcctttctgtttcatattgtattgtcgcatttaatcaatattgaaacaatgaagctgg---- |
300 |
Q |
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| T |
18018691 |
gttggagtcacaaaattgtgtgattgacttctgccacaacatctctgtttcatattgtattgtcgcatttaatcaatagtgaaacaatgaagctggaaat |
18018592 |
T |
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| Q |
301 |
-----------catttgcttgactcatcagataatttcaaactagactagtcattttggatcgacattat |
359 |
Q |
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| T |
18018591 |
tctatctctattatttgcttgaatcatcacacaaattcaaactagactagtcattttggatcgacattat |
18018522 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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