View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17793_low_39 (Length: 400)
Name: NF17793_low_39
Description: NF17793
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17793_low_39 |
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Alignment Details
Target: chr4 (Bit Score: 386; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 386; E-Value: 0
Query Start/End: Original strand, 1 - 386
Target Start/End: Complemental strand, 53902746 - 53902361
Alignment:
| Q |
1 |
tcatttctggtttgcttcatctcttagttagatttctatggagacctcagagtagagaccctgatgaattggatgatgttactgctcttcaagggcaatt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53902746 |
tcatttctggtttgcttcatctcttagttagatttctatggagacctcagagtagagaccctgatgaattggatgatgttactgctcttcaagggcaatt |
53902647 |
T |
|
| Q |
101 |
gcaacagctttttcatcttcatgatgctggtgttgaccaatcattcattgatacacttcctgtgtttctttacaaaactattataggattgaaagtgaac |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53902646 |
gcaacagctttttcatcttcatgatgctggtgttgaccaatcattcattgatacacttcctgtgtttctttacaaaactattataggattgaaagtgaac |
53902547 |
T |
|
| Q |
201 |
ccttttgattgtgctgtttgtttgtgtgaatttgagcatgaagataagcttaggttgttgccaaaatgtagccatgcttttcatatggagtgtattgata |
300 |
Q |
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| T |
53902546 |
ccttttgattgtgctgtttgtttgtgtgaatttgagcatgaagataagcttaggttgttgccaaaatgtagccatgcttttcatatggagtgtattgata |
53902447 |
T |
|
| Q |
301 |
catggcttttgtctcactctacttgtcctctttgtagagctaatttgctccatgatttcaacacaaacaattgtggttctcctttg |
386 |
Q |
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| T |
53902446 |
catggcttttgtctcactctacttgtcctctttgtagagctaatttgctccatgatttcaacacaaacaattgtggttctcctttg |
53902361 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 271 - 340
Target Start/End: Complemental strand, 44026783 - 44026714
Alignment:
| Q |
271 |
gccatgcttttcatatggagtgtattgatacatggcttttgtctcactctacttgtcctctttgtagagc |
340 |
Q |
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| T |
44026783 |
gccatgcttttcatatgaattgtcttgacacatggcttctctcaaactctacttgtcctctttgtagagc |
44026714 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 201 - 339
Target Start/End: Complemental strand, 1873669 - 1873531
Alignment:
| Q |
201 |
ccttttgattgtgctgtttgtttgtgtgaatttgagcatgaagataagcttaggttgttgccaaaatgtagccatgcttttcatatggagtgtattgata |
300 |
Q |
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||||||||||||||||||||||||||||| ||| | |||| ||||| || ||||| || | |||||||||||||||||||| ||||| |||| |
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| T |
1873669 |
ccttttgattgtgctgtttgtttgtgtgagtttactgagaaagacaagctaagattgttacctatgtgtagccatgcttttcatataagttgtatagata |
1873570 |
T |
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| Q |
301 |
catggcttttgtctcactctacttgtcctctttgtagag |
339 |
Q |
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| T |
1873569 |
cttggctactttcaaactctacttgtcctctttgtagag |
1873531 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 102 - 286
Target Start/End: Complemental strand, 15103854 - 15103673
Alignment:
| Q |
102 |
caacagctttttcatcttcatgatgctggtgttgaccaatcattcattgatacacttcctgtgtttctttacaaaactattataggattgaaagtgaacc |
201 |
Q |
| |
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||||||||||| ||||||||||| | ||| | || ||| ||||||||||| |||||||||| || |||||||| || || || ||||||| | | |
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| T |
15103854 |
caacagcttttcaatcttcatgattcaggtttagatcaagcattcattgatgcacttcctgttttcatttacaaagagataattggtttgaaagag---c |
15103758 |
T |
|
| Q |
202 |
cttttgattgtgctgtttgtttgtgtgaatttgagcatgaagataagcttaggttgttgccaaaatgtagccatgcttttcatat |
286 |
Q |
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| T |
15103757 |
catttgattgtgctgtttgtttatgtgagtttttggaacaagataagttaagattgttaccaaattgtaaccatgcttttcatat |
15103673 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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