View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17793_low_4 (Length: 785)
Name: NF17793_low_4
Description: NF17793
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17793_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 405; Significance: 0; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 405; E-Value: 0
Query Start/End: Original strand, 185 - 669
Target Start/End: Original strand, 3929038 - 3929520
Alignment:
| Q |
185 |
ggtaactttataccaagactgtcataatattttaacatctataactcattttgatggtactgttatattgataggaagctctagaatatagggaacgaat |
284 |
Q |
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| T |
3929038 |
ggtaactttataccaagactgtcataatattttaacatctataactcattttgatggtactgttatattgatagtaagctctagaatatagggagcgaat |
3929137 |
T |
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| Q |
285 |
cgacagtggtggaaggatggaacgacattaatcaacaggggttaaatgaaggatggacgtaaaatttgacaggatcaaatactaatttgacatatttgag |
384 |
Q |
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| T |
3929138 |
tgacagtggtggaaggatggaatgacattaatcaacaggcgttaactgaaggatggaagtaaaatttgacaggatcaaatactaatttgacatatttgag |
3929237 |
T |
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| Q |
385 |
agcgccctacaaagtcaaagacaagcttgatgatttactcaacaattatgtcttgagaattgcctctacactatacaaaagctattgagaatcaaaatac |
484 |
Q |
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| T |
3929238 |
agcgccctacaaagtcaaagacaagcttggtgatttactcaacaattatgtcttgagaattgcctctacactatacaaaagctattgagaatcaaaatac |
3929337 |
T |
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| Q |
485 |
attagatactctttctttcnnnnnnngtatcagtacatttgatagccttgggagaggcttatcacaccattgccaaagctcaattactgtatatttcagt |
584 |
Q |
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| T |
3929338 |
attagatactc--tctttctttttttgtatcagtacatttgatagccttgggagaggcttatcacaacattgccaaagctcaattagtgtatatttcagt |
3929435 |
T |
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| Q |
585 |
gttgcctattaattaatcattgcataccaggtttttattgctaaattgatttagtgtagtaaatttgactacctgataaatgatt |
669 |
Q |
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| T |
3929436 |
gttgcctattaactaatcaatgcataccaggtttttattgctaaattgatttagtgtagtaaatttgactacctgataaatgatt |
3929520 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 131; E-Value: 2e-67
Query Start/End: Original strand, 2 - 141
Target Start/End: Original strand, 3928892 - 3929033
Alignment:
| Q |
2 |
tgtcgccagtgctgattttcttgtggccattgtatggtgatatattattgaaatagtgcaagttttagttttgaaagtgattgacttgaaatctgg--ta |
99 |
Q |
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| T |
3928892 |
tgtcgccagtgctgattttcttgtggccattgtatggtgatatattattgaaatagtgcaagttttagttttgaaagtgattgacttgaaatctggtata |
3928991 |
T |
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| Q |
100 |
gtgtatacagttttgatagtcgattctggaactggtagagca |
141 |
Q |
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| T |
3928992 |
gtgtatacagttttgatagtcgattctggaactggtagagca |
3929033 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 707 - 769
Target Start/End: Original strand, 3929628 - 3929690
Alignment:
| Q |
707 |
atatccatagacaacttcgatattaaaattgaagcaaaatttcccaacttcaaagctaaaaag |
769 |
Q |
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| T |
3929628 |
atatccatagacaacttcaatattaaaattgaagcaaaatttcccaacgtcaaagctaaaaag |
3929690 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 249 - 322
Target Start/End: Original strand, 3914729 - 3914802
Alignment:
| Q |
249 |
atattgataggaagctctagaatatagggaacgaatcgacagtggtggaaggatggaacgacattaatcaacag |
322 |
Q |
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| T |
3914729 |
atattgatagtaagctctaagctataggaaccaaattgacagtagcggaaggatggaacgacattaatcgacag |
3914802 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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