View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17793_low_40 (Length: 400)
Name: NF17793_low_40
Description: NF17793
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17793_low_40 |
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Alignment Details
Target: chr1 (Bit Score: 217; Significance: 1e-119; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 161 - 385
Target Start/End: Complemental strand, 45597490 - 45597266
Alignment:
| Q |
161 |
ctaaaatcaagtcaattgatacctattctctccctctagccttatcgatctccgacttctctccaaccaaacacaaatcttctccaccgccttacccgat |
260 |
Q |
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| T |
45597490 |
ctaaaatcaagtcaattgatacctattctctccctctagccttatcgatctccgacttctctctaaccaaacacaaatcttctccaccgccttacccgat |
45597391 |
T |
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| Q |
261 |
catccaaatctcacccttcaagatgtaattgctactgatggtggtacgattagaagcttccatctccgcaccacctctcccatgtccttcaatgttgtgt |
360 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
45597390 |
catccaaatctcacccttcaagatgtaattgctactgatggtggtacgattagaagcttccatctccgcaccacctctcccatgtccttcgatgttgtgt |
45597291 |
T |
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| Q |
361 |
cgagagcttctccttgatttgcatt |
385 |
Q |
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| T |
45597290 |
cgagagcttctccttgatttgcatt |
45597266 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 45597600 - 45597512
Alignment:
| Q |
1 |
tgaagtcttatacatactttactatttataaatctgtggtacattgtgtttcccttgcagagtttggttcattgaatttttaatatcat |
89 |
Q |
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| T |
45597600 |
tgaagtcgtatacatactttacaatttataaacctgtggtatattgagttgcccttgcaaaatctagttcattgaatttttaatatcat |
45597512 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 56; Significance: 4e-23; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 1 - 128
Target Start/End: Complemental strand, 4016572 - 4016446
Alignment:
| Q |
1 |
tgaagtcttatacatactttactatttataaatctgtggtacattgtgtttcccttgcagagtttggttcattgaatttttaatatcatggatctttggc |
100 |
Q |
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| T |
4016572 |
tgaagtcgtatacatactttacaatc-ataaacctggggtacattaagttgcccttgtaaaatttggttcattgaatttttaatatcatggatctatggt |
4016474 |
T |
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| Q |
101 |
tataatgtatttgtgcatgggtacacaa |
128 |
Q |
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| T |
4016473 |
tataatgcacttgtgtatgggtacacaa |
4016446 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 194 - 255
Target Start/End: Complemental strand, 32869381 - 32869320
Alignment:
| Q |
194 |
ctctagccttatcgatctccgacttctctccaaccaaacacaaatcttctccaccgccttac |
255 |
Q |
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| T |
32869381 |
ctctagccttatcattctccgacttctctctaaccaaacacaaaccttctccaccaccttac |
32869320 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 220 - 294
Target Start/End: Original strand, 29535226 - 29535304
Alignment:
| Q |
220 |
tctccaaccaaacacaaatcttctccaccgccttacccgatcatccaaatctcaccctt----caagatgtaattgcta |
294 |
Q |
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|||| ||||||| ||||| |||||||||| |||||| | ||||||||||||||| |||| |||||||||||||||| |
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| T |
29535226 |
tctctaaccaaatacaaaccttctccaccaccttactcaatcatccaaatctcatccttcgaccaagatgtaattgcta |
29535304 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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