View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17793_low_41 (Length: 394)
Name: NF17793_low_41
Description: NF17793
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17793_low_41 |
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| [»] scaffold0122 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 325; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 15 - 379
Target Start/End: Complemental strand, 38370238 - 38369867
Alignment:
| Q |
15 |
tgtgatatatgggacctctaacaataattatattcaattcctcatttctccattacattatatata--attgaaaacaatgtaagattttttatattgct |
112 |
Q |
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| T |
38370238 |
tgtgatatatgggacctctaacaataattatattcaattcctcatttctccattacattatatatataattgaaaacaatgtaagatcttttatattgct |
38370139 |
T |
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| Q |
113 |
aactaaccatattctattagttttaaattaaatgtaataaaagtcaaacatctttagggaccgaactctttagatttactgcaacgtctctatgtaccga |
212 |
Q |
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| T |
38370138 |
aactaaccatattctattagttttaaattaaatgtaataaaagtcaaacatctctagggaccgaactctttagatttactgcaacgtctctatgtactga |
38370039 |
T |
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| Q |
213 |
gttatgct-----caagagtctgaatataaagtaaattctatacaacatatatatgtgtgttataaaactatgagtctaaatttttaattgtgattggat |
307 |
Q |
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| T |
38370038 |
gttatgctatgctcaagagtatgaatataaagtaaattctatacaacatatatatgtgtgttataaaactatgagtctaaatttttaattgtgattggat |
38369939 |
T |
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| Q |
308 |
attttggtgtttggtatgcaggctgggtctagtgagtggctgcaaatgaatcatttatggggtgcaaattgg |
379 |
Q |
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| T |
38369938 |
attttggtgtttggtatgcaggctgggtctagtgagtggctgcaaatgaatcatttatggggtgcaaattgg |
38369867 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 301 - 379
Target Start/End: Complemental strand, 38363586 - 38363508
Alignment:
| Q |
301 |
attggatattttggtgtttggtatgcaggctgggtctagtgagtggctgcaaatgaatcatttatggggtgcaaattgg |
379 |
Q |
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| T |
38363586 |
attggatattttggtgtttggcatgcaggctggatctagtgagtggctacaaatgaatcatctatggggtgcaaattgg |
38363508 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 65
Target Start/End: Complemental strand, 38363769 - 38363717
Alignment:
| Q |
15 |
tgtgatatatgggacctctaaca--ataattatattcaattcctcatttctcc |
65 |
Q |
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| T |
38363769 |
tgtgatatatgggacctctataatgaaaattatattcaattcctcatttctcc |
38363717 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0122 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0122
Description:
Target: scaffold0122; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 335 - 381
Target Start/End: Complemental strand, 6666 - 6620
Alignment:
| Q |
335 |
tctagtgagtggctgcaaatgaatcatttatggggtgcaaattggtg |
381 |
Q |
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| T |
6666 |
tctagtgagtggctacaaatgaatcatctgtggggtgcaaattggtg |
6620 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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