View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17793_low_42 (Length: 391)

Name: NF17793_low_42
Description: NF17793
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17793_low_42
NF17793_low_42
[»] chr8 (1 HSPs)
chr8 (19-380)||(4634318-4634677)
[»] chr2 (1 HSPs)
chr2 (187-380)||(21838164-21838357)
[»] chr6 (1 HSPs)
chr6 (19-123)||(660638-660741)
[»] chr1 (2 HSPs)
chr1 (308-372)||(17732934-17732998)
chr1 (330-380)||(7762119-7762169)
[»] chr3 (1 HSPs)
chr3 (330-375)||(22761944-22761989)


Alignment Details
Target: chr8 (Bit Score: 283; Significance: 1e-158; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 19 - 380
Target Start/End: Original strand, 4634318 - 4634677
Alignment:
Q  19 tacccaatagcatagtcagaaatccaagccactcaaacaacctctatcataggatcactatctacaactacttgtcgacaaaatttagtttgtataatct 118  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  4634318 tacccaatagcatagtcagaaatccaagccactcaaaccacctctatcataggatcactatctacaactacttgtcaacaaaatttagtttgtataatct 4634417  T
Q  119 gcctactcaaannnnnnncagtttacattgaactattatcaatagtgtatttcataaacccatttttatcataaactgaactgaagcatattcaaaccca 218  Q
    |||||||||||       || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4634418 gcctactcaaatttttttcaatttacattgaactattatcaatagtgtatttcataaacccatttttatcataaactgaactgaagcatattcaaaccca 4634517  T
Q  219 actctaattctcacagtatacttttgatttcttccttcatcaacacacctcaacatataggactcacgcacatttnnnnnnnnnnncaatatatatggca 318  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||           ||||||||||||||    
T  4634518 actctaattctcacagtatacttttgatttcttccgtcatcaacacacctcaacatataggactcacacacattt--aaaaaaaaccaatatatatggca 4634615  T
Q  319 accaagtttcatatcctaatcaaccaagccaagacaaactattccctgtaatttattatttt 380  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4634616 accaagtttcatatcctaatcaaccaagccaagacaaactattccctgtaatttattatttt 4634677  T

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Target: chr2 (Bit Score: 137; Significance: 2e-71; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 187 - 380
Target Start/End: Complemental strand, 21838357 - 21838164
Alignment:
Q  187 tcataaactgaactgaagcatattcaaacccaactctaattctcacagtatacttttgatttcttccttcatcaacacacctcaacatataggactcacg 286  Q
    ||||||||| |||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||     
T  21838357 tcataaactcaactaaagcatattcaaacccaactctaattctcacaatatacttttgatttcttccttcatcaacacacctcaacatataggactcaca 21838258  T
Q  287 cacatttnnnnnnnnnnncaatatatatggcaaccaagtttcatatcctaatcaaccaagccaagacaaactattccctgtaatttattatttt 380  Q
    |||||||           ||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  21838257 cacatttaaaaaaaaaaccaatatataaggcaaccaagtttcatatcctaatcaaccaagccaagacaaactatgccctgtaatttattatttt 21838164  T

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Target: chr6 (Bit Score: 61; Significance: 4e-26; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 19 - 123
Target Start/End: Original strand, 660638 - 660741
Alignment:
Q  19 tacccaatagcatagtcagaaatccaagccactcaaacaacctctatcataggatcactatctacaactacttgtcgacaaaatttagtttgtataatct 118  Q
    |||||||| ||||| ||||||||||||||||||||||| |||| ||||| ||||||||||||||||||||| |||| ||||||||| ||| |||||||||    
T  660638 tacccaatggcatattcagaaatccaagccactcaaaccacct-tatcacaggatcactatctacaactacctgtcaacaaaatttggttggtataatct 660736  T
Q  119 gccta 123  Q
     ||||    
T  660737 tccta 660741  T

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Target: chr1 (Bit Score: 53; Significance: 3e-21; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 308 - 372
Target Start/End: Complemental strand, 17732998 - 17732934
Alignment:
Q  308 tatatatggcaaccaagtttcatatcctaatcaaccaagccaagacaaactattccctgtaattt 372  Q
    |||||| |||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  17732998 tatataaggcacccaagttttatatcctaatcaaccaagccaagacaaactattccctgtaattt 17732934  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 330 - 380
Target Start/End: Complemental strand, 7762169 - 7762119
Alignment:
Q  330 tatcctaatcaaccaagccaagacaaactattccctgtaatttattatttt 380  Q
    ||||||||||| ||||||||||||||||||||| || |||| |||| ||||    
T  7762169 tatcctaatcagccaagccaagacaaactattctctataatatattttttt 7762119  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 330 - 375
Target Start/End: Original strand, 22761944 - 22761989
Alignment:
Q  330 tatcctaatcaaccaagccaagacaaactattccctgtaatttatt 375  Q
    |||||||| || ||||||||||||||| |||||||| |||||||||    
T  22761944 tatcctaaacagccaagccaagacaaaatattccctataatttatt 22761989  T

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