View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17793_low_44 (Length: 380)
Name: NF17793_low_44
Description: NF17793
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17793_low_44 |
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| [»] scaffold1983 (1 HSPs) |
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| [»] scaffold1033 (2 HSPs) |
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| [»] scaffold1029 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 161; Significance: 9e-86; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 161; E-Value: 9e-86
Query Start/End: Original strand, 204 - 372
Target Start/End: Complemental strand, 28564933 - 28564765
Alignment:
| Q |
204 |
tcattgcaggatggacgttgagtgtggtttggtcaaggttcttagcaaatccataacttcaggtgaagcacaagaaaatataccaagcttttataggatg |
303 |
Q |
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| T |
28564933 |
tcattgcaggatggacgttgagtgtggtttggtcaaggttcttagcaaatccataacttcaggtgaagcacaagaaaatataccaagcttttataggatg |
28564834 |
T |
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| Q |
304 |
catactcatgtatctatacaagaaagcataaaagtttattatctatcattctataatgatattgagttt |
372 |
Q |
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| T |
28564833 |
catactcatgtatctatacaagaaagcataaaagtttattatctatcattctataatgtttttgagttt |
28564765 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 179 - 340
Target Start/End: Complemental strand, 28579075 - 28578914
Alignment:
| Q |
179 |
tgtgtttttctgattgtgtttaatatcattgcaggatggacgttgagtgtggtttggtcaaggttcttagcaaatccataacttcaggtgaagcacaaga |
278 |
Q |
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| T |
28579075 |
tgtgtttttctgattgtgtttaagatcattgtaggaaggacgttgagtgtggttgggtcaaggttcatagaaaacccataacttcacgtgaagcacaaga |
28578976 |
T |
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| Q |
279 |
aaatataccaagcttttataggatgcatactcatgtatctatacaagaaagcataaaagttt |
340 |
Q |
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| T |
28578975 |
aaatatgccatgcttgtataggatgtttgctcatgtatctatgtatgaaagaataaaagttt |
28578914 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 10 - 161
Target Start/End: Complemental strand, 28565385 - 28565235
Alignment:
| Q |
10 |
agaacctgtgatgagagctgatgtttcttcgcctgtgatgttacttggttgttactgttactaacgggnnnnnnnnnnnnnnnnttcccgtcccaagtaa |
109 |
Q |
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| T |
28565385 |
agaaccagtaatgagagctgatgtttcttcacctgtgatgttacttggttgttactgttactaacgggaaaaaaattaaaaaa-ttcccgtgccaagtaa |
28565287 |
T |
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| Q |
110 |
ctagaatgaatcttataccataatgtgaaggtgactaaagtacatgacacta |
161 |
Q |
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| T |
28565286 |
ctagaatgaatcttataccataatgtgaaggtgactaaagtaaatgacacta |
28565235 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 160 - 203
Target Start/End: Complemental strand, 28565126 - 28565083
Alignment:
| Q |
160 |
tacaactaattatgcgaactgtgtttttctgattgtgtttaata |
203 |
Q |
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| T |
28565126 |
tacaactaattatgcgaactgtatttttctgattgtgtttaata |
28565083 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 109 - 161
Target Start/End: Complemental strand, 28579254 - 28579202
Alignment:
| Q |
109 |
actagaatgaatcttataccataatgtgaaggtgactaaagtacatgacacta |
161 |
Q |
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| T |
28579254 |
actaaaatgaatcttataccatgttgtcaaggtgactaaagtacatgaaacta |
28579202 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1983 (Bit Score: 80; Significance: 2e-37; HSPs: 1)
Name: scaffold1983
Description:
Target: scaffold1983; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 163 - 341
Target Start/End: Complemental strand, 255 - 74
Alignment:
| Q |
163 |
aactaattatgcgaac---tgtgtttttctgattgtgtttaatatcattgcaggatggacgttgagtgtggtttggtcaaggttcttagcaaatccataa |
259 |
Q |
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|||||||||||||||| |||||||||||||||||||||| |||||||| ||||||||||||||||||| ||||||||||| | | ||| ||||| |
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| T |
255 |
aactaattatgcgaacaattgtgtttttctgattgtgtttacgatcattgccagatggacgttgagtgtggtcgggtcaaggttcattgaaaactcataa |
156 |
T |
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| Q |
260 |
cttcaggtgaagcacaagaaaatataccaagcttttataggatgcatactcatgtatctatacaagaaagcataaaagttta |
341 |
Q |
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| T |
155 |
cttcacgtgaagcacaaaaaaatatgacatgcttttgtacgatgtttgctcatgtatctatacatgaaagcataaaagttta |
74 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1033 (Bit Score: 62; Significance: 1e-26; HSPs: 2)
Name: scaffold1033
Description:
Target: scaffold1033; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 163 - 340
Target Start/End: Original strand, 777 - 963
Alignment:
| Q |
163 |
aactaattatgcgaac---tgtgtttttctgattgtgtttaatatcattgcaggatggacgttgagtgtggtttggtcaaggttcttagcaaatccataa |
259 |
Q |
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| T |
777 |
aactaattatgagaacaattgtatttttctgattgtgtttacgatcattgccggatggacgttaagagtggtcgggtcaaggttcatagaaaactcataa |
876 |
T |
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| Q |
260 |
cttcaggtgaagcacaagaaaatataccaagcttttataggatgc------atactcatgtatctatacaagaaagcataaaagttt |
340 |
Q |
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| T |
877 |
cttcacgtgaagcacaagaaaatatgccatgtttgtataggatgccattgtttactcatgtttctgtacatgaaagcataaaagttt |
963 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1033; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 109 - 163
Target Start/End: Original strand, 597 - 651
Alignment:
| Q |
109 |
actagaatgaatcttataccataatgtgaaggtgactaaagtacatgacactaca |
163 |
Q |
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|||| ||||||||||||||||| ||| ||||||||||||||||||||||||||| |
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| T |
597 |
actaaaatgaatcttataccatgttgtcaaggtgactaaagtacatgacactaca |
651 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1029 (Bit Score: 62; Significance: 1e-26; HSPs: 2)
Name: scaffold1029
Description:
Target: scaffold1029; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 163 - 340
Target Start/End: Original strand, 777 - 963
Alignment:
| Q |
163 |
aactaattatgcgaac---tgtgtttttctgattgtgtttaatatcattgcaggatggacgttgagtgtggtttggtcaaggttcttagcaaatccataa |
259 |
Q |
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||||||||||| |||| ||| |||||||||||||||||| |||||||| ||||||||||| || ||||| ||||||||||| ||| ||| ||||| |
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| T |
777 |
aactaattatgagaacaattgtatttttctgattgtgtttacgatcattgccggatggacgttaagagtggtcgggtcaaggttcatagaaaactcataa |
876 |
T |
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| Q |
260 |
cttcaggtgaagcacaagaaaatataccaagcttttataggatgc------atactcatgtatctatacaagaaagcataaaagttt |
340 |
Q |
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||||| ||||||||||||||||||| ||| | || |||||||||| ||||||||| ||| |||| |||||||||||||||| |
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| T |
877 |
cttcacgtgaagcacaagaaaatatgccatgtttgtataggatgccattgtttactcatgtttctgtacatgaaagcataaaagttt |
963 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1029; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 109 - 163
Target Start/End: Original strand, 597 - 651
Alignment:
| Q |
109 |
actagaatgaatcttataccataatgtgaaggtgactaaagtacatgacactaca |
163 |
Q |
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|||| ||||||||||||||||| ||| ||||||||||||||||||||||||||| |
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| T |
597 |
actaaaatgaatcttataccatgttgtcaaggtgactaaagtacatgacactaca |
651 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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