View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17793_low_46 (Length: 372)

Name: NF17793_low_46
Description: NF17793
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17793_low_46
NF17793_low_46
[»] chr7 (1 HSPs)
chr7 (64-356)||(45650820-45651108)


Alignment Details
Target: chr7 (Bit Score: 276; Significance: 1e-154; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 64 - 356
Target Start/End: Complemental strand, 45651108 - 45650820
Alignment:
Q  64 tgatatctaatccctactatattcaaggagtaggtttgaatatattgagcatggcccgtgtttatcttcctttagcaaagattctaagcattcccacgta 163  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45651108 tgatatctaatccctactatattcaaggagtaggtttgaatatattgagcatggcccgtgtttatcttcctttagcaaagattctaagcattcccacgta 45651009  T
Q  164 ctcacatacctaacgtgtaccattcttcttcttataagcatgcatactgttgttcacaggcggcttcttaattatttcattctatattcaaaatctataa 263  Q
    |||||||||||||||||||||||||||||||||||||||||    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45651008 ctcacatacctaacgtgtaccattcttcttcttataagcat----actgttgttcacaggcggcttcttaattatttcattctatattcaaaatctataa 45650913  T
Q  264 acaaaagtagttaacatgtcactgcggtataattaatggataagcttttgaatgattgaagagcaagttttgtttatgagttcatatactaaa 356  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45650912 acaaaagtagttaacatgtcactgcggtataattaatggataagcttttgaatgattgaagagcaagttttgtttatgagttcatatactaaa 45650820  T

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