View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17793_low_47 (Length: 365)

Name: NF17793_low_47
Description: NF17793
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17793_low_47
NF17793_low_47
[»] chr6 (1 HSPs)
chr6 (34-365)||(32950493-32950833)


Alignment Details
Target: chr6 (Bit Score: 275; Significance: 1e-154; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 34 - 365
Target Start/End: Original strand, 32950493 - 32950833
Alignment:
Q  34 cagagagcagttaaatcaatatctaaataaaagac----------caaaacataaaccacatggattttcttcatcttaagcctccaactgcttttacac 123  Q
    |||||||||||||||||||||| ||||||||||||          |||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  32950493 cagagagcagttaaatcaatatttaaataaaagactataaagggccaaaacataaaccacatggattttcttcatcttaagcctccaactgcttttaaac 32950592  T
Q  124 ttaagctgccttagtgatcctgggtggctggctgctttcgaacttcagttatcttagctttctgccttcggtcttcagctttctgcattctgtctttagc 223  Q
    |||||||||||||| |||||||||||||||||| ||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  32950593 ttaagctgccttagcgatcctgggtggctggcttctttcgaacttca-ttatcttagctttctgctttcggtcttcagctttctgcattctgtctttagc 32950691  T
Q  224 tttccgctttctgtctctcagctttagaatttcgatgttagctttcctccttttatcttcaagattttgaacttcagcgaaatctatctcttcaccgatc 323  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32950692 tttccgctttctgtctctcagctttagaatttcgatgttagctttcctccttttatcttcaagattttgaacttcagcgaaatctatctcttcaccgatc 32950791  T
Q  324 ctcattctttcttcagctctcagcttttggtcttcagccctc 365  Q
    ||||||||||||||||||||||||||||||| ||||||||||    
T  32950792 ctcattctttcttcagctctcagcttttggttttcagccctc 32950833  T

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