View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17793_low_49 (Length: 357)
Name: NF17793_low_49
Description: NF17793
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17793_low_49 |
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Alignment Details
Target: chr5 (Bit Score: 273; Significance: 1e-152; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 18 - 348
Target Start/End: Original strand, 17142914 - 17143243
Alignment:
| Q |
18 |
acactttggtcctttcttttgcccaaacttagggaagcaaattaaaattagagaaagcaagacattgagccaaaaacgtgagcacttttagaataggctc |
117 |
Q |
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| T |
17142914 |
acactttggtcctttcttttgcccaaacttagggaagcaaattaaaattagagaaagtaagacattgagccaaaaacgtgagcacttttagaataggctc |
17143013 |
T |
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| Q |
118 |
tcttcaaatggtgttcctaacaaaaggaagaaataggaaacattaactactaaatattcaatgagcttattatgatg-tatagagtcctacatcatacat |
216 |
Q |
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| T |
17143014 |
tcttcaaatggtgttcctaacaaaaggaagaaataggaaacattaaccactaaatattcaatgagcttattatgatgttatagagtcctacatcatacat |
17143113 |
T |
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| Q |
217 |
cgaacgatatatagtttgaacatgtatttataagtgaggacaatctttaactcataaatcaatttggtaaggataaattaggctcaacacgatttttaag |
316 |
Q |
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| T |
17143114 |
cgaacgatatatagtttgaacatgtgtttataagtgaagataatcttcacctcataaatcagttttgtaaggataagttaggctcaacacgatttttaag |
17143213 |
T |
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| Q |
317 |
acggtatcagagtctcctccaagatcctttga |
348 |
Q |
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| T |
17143214 |
acggtatc--agtctcctccaagatcctttga |
17143243 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 304 - 343
Target Start/End: Complemental strand, 24270118 - 24270079
Alignment:
| Q |
304 |
cacgatttttaagacggtatcagagtctcctccaagatcc |
343 |
Q |
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| T |
24270118 |
cacgatttttaagatggtatcagagcctcctccaagatcc |
24270079 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 304 - 343
Target Start/End: Complemental strand, 24346749 - 24346710
Alignment:
| Q |
304 |
cacgatttttaagacggtatcagagtctcctccaagatcc |
343 |
Q |
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| T |
24346749 |
cacgatttttaagatggtatcagagcctcctccaagatcc |
24346710 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 304 - 343
Target Start/End: Original strand, 38629913 - 38629952
Alignment:
| Q |
304 |
cacgatttttaagacggtatcagagtctcctccaagatcc |
343 |
Q |
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| T |
38629913 |
cacgatttttaagatggtatcagagcctcctccaagatcc |
38629952 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 294 - 339
Target Start/End: Complemental strand, 39348375 - 39348330
Alignment:
| Q |
294 |
ttaggctcaacacgatttttaagacggtatcagagtctcctccaag |
339 |
Q |
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| T |
39348375 |
ttaggcccaacacgatttctaagatggtatcagagcctcctccaag |
39348330 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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