View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17793_low_54 (Length: 349)
Name: NF17793_low_54
Description: NF17793
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17793_low_54 |
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| [»] scaffold0360 (2 HSPs) |
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Alignment Details
Target: scaffold0360 (Bit Score: 229; Significance: 1e-126; HSPs: 2)
Name: scaffold0360
Description:
Target: scaffold0360; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 69 - 341
Target Start/End: Original strand, 15588 - 15860
Alignment:
| Q |
69 |
acaattgtataaactttgagaagcaaaaccagatgttaggttacatcgggatccatcgaaaatttgctttcaaggcggtggttttttactcttaatattt |
168 |
Q |
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| T |
15588 |
acaattgtataaactttgagaagcaaaactagatgttaggttacatcgaagtccaccgaaaatttgctttcaagacggtggttttttactcttaatattt |
15687 |
T |
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| Q |
169 |
ccaacaacaagaaaacattaatatatgtaaatgtgtctaaatcttttggatttgggttcgtcccctagaaagtatttctcgtgaacaaaagtgataagtg |
268 |
Q |
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| T |
15688 |
ccaacaacaacaaaacattaatatatgtaaatgtgtctaaatcttttggatttgggttcgttccctagcaagtatttctcgtgaacaaaagtgataagtg |
15787 |
T |
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| Q |
269 |
gtactagtagaggactgactacctacgtatgccttcgagaacataaattagcaacttttttctctcttcttct |
341 |
Q |
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| T |
15788 |
gtactggtagaggactgactacctacgtatgccttcgagaacataaactagcaacttttttctctcttcttct |
15860 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0360; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 17 - 69
Target Start/End: Original strand, 15204 - 15256
Alignment:
| Q |
17 |
attgtttgtgaagcttggtcatgtttggcctcgaatgcatgagtttagacata |
69 |
Q |
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| T |
15204 |
attgtttgtgaagcttcgtcatgtttggtctcgagtgcatgagtttagacata |
15256 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 116; Significance: 6e-59; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 193 - 341
Target Start/End: Original strand, 5861358 - 5861508
Alignment:
| Q |
193 |
atgtaaatgtgtctaaatcttttggatttgggttcgtcccctagaaagtatttctcgtgaacaaaagtgataagtggtactagtagaggactgactacct |
292 |
Q |
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| T |
5861358 |
atgtaaatgtgtctaaatcttttagatttgggttcgtcccctagcaagtatttctcatgaacaaaagtgataagtggtactagtagaggactgcctacct |
5861457 |
T |
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| Q |
293 |
acgtatgccttcgagaacataaattagcaac--ttttttctctcttcttct |
341 |
Q |
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| T |
5861458 |
acgtatgccttggagaacataaactagcaacttttttttctctcttcttct |
5861508 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 250 - 341
Target Start/End: Complemental strand, 5891847 - 5891757
Alignment:
| Q |
250 |
tgaacaaaagtgataagtggtactagtagaggactgactacctacgtatgccttcgagaacataaattagcaacttttttctctcttcttct |
341 |
Q |
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| T |
5891847 |
tgaacaaaagtgataagtggtactagtagaggactggctgcctacgtatgccctagagaacat-aaccagcaactttttttcctcttcttct |
5891757 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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