View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17793_low_61 (Length: 337)

Name: NF17793_low_61
Description: NF17793
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17793_low_61
NF17793_low_61
[»] chr4 (5 HSPs)
chr4 (3-324)||(48912087-48912408)
chr4 (7-320)||(48958264-48958577)
chr4 (3-327)||(48965442-48965763)
chr4 (166-320)||(48961413-48961567)
chr4 (145-272)||(48951399-48951526)
[»] scaffold0536 (2 HSPs)
scaffold0536 (3-320)||(6253-6570)
scaffold0536 (3-324)||(10237-10556)
[»] chr6 (2 HSPs)
chr6 (3-320)||(12589911-12590231)
chr6 (3-274)||(12483206-12483477)
[»] chr2 (3 HSPs)
chr2 (7-274)||(13440363-13440630)
chr2 (125-324)||(13448479-13448675)
chr2 (184-271)||(13455000-13455087)
[»] chr7 (1 HSPs)
chr7 (65-288)||(3417334-3417557)
[»] chr5 (2 HSPs)
chr5 (87-288)||(28385483-28385684)
chr5 (82-274)||(12540848-12541040)
[»] chr8 (1 HSPs)
chr8 (133-274)||(12641353-12641494)


Alignment Details
Target: chr4 (Bit Score: 302; Significance: 1e-170; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 3 - 324
Target Start/End: Original strand, 48912087 - 48912408
Alignment:
Q  3 aactattcaagagaaagcacagagaggagaagagagtgttgtgagtgtgcacgagtgtttgagttggcttaactcgaaacaagataactcggtggtgtac 102  Q
    ||||||||||||||| ||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48912087 aactattcaagagaaggctgagagaggagaagagagtgttgtgagtgtgcacgagtgtttgagttggcttaactcgaaacaagataactcggtggtgtac 48912186  T
Q  103 atatgctttggaagccgatgtcatttttcggataaacaactttatgagattgcgtgcgggattgaagcatcgagtcacgaattcatatgggttgttcctg 202  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48912187 atatgctttggaagccaatgtcatttttcggataaacaactttatgagattgcgtgcgggattgaagcatcgagtcacgaattcatatgggttgttcctg 48912286  T
Q  203 aaaagaaacggacggagcatgacaatgaagaggagaaagaaaaatggttgccaaaggggtttgaagagagaattatcggaaagaagaaggctatgattat 302  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48912287 aaaagaaacggacggagaatgacaatgaagaggagaaagaaaaatggttgccaaaggggtttgaagagagaattatcggaaagaagaaggctatgattat 48912386  T
Q  303 taagggttgggctccacaggtt 324  Q
    ||||||||||||||||||||||    
T  48912387 taagggttgggctccacaggtt 48912408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 7 - 320
Target Start/End: Complemental strand, 48958577 - 48958264
Alignment:
Q  7 attcaagagaaagcacagagaggagaagagagtgttgtgagtgtgcacgagtgtttgagttggcttaactcgaaacaagataactcggtggtgtacatat 106  Q
    |||||||||||| || |||| ||| | |||| |||||| |||||||| |  ||| |||||||||| |||| |||   | ||||||| ||| |||||||||    
T  48958577 attcaagagaaatcagagaggggaaatgagaatgttgttagtgtgcatggttgtctgagttggctcaacttgaagagacataactcagtgttgtacatat 48958478  T
Q  107 gctttggaagccgatgtcatttttcggataaacaactttatgagattgcgtgcgggattgaagcatcgagtcacgaattcatatgggttgttcctgaaaa 206  Q
    |||||||||||  |||| |||| || |||||||||||||||||||||||||| ||||| ||||||||  ||||||||||  |||||||||||||||| ||    
T  48958477 gctttggaagcatatgttatttatctgataaacaactttatgagattgcgtgtgggatagaagcatcaggtcacgaatttgtatgggttgttcctgagaa 48958378  T
Q  207 gaaacggacggagcatgacaatgaagaggagaaagaaaaatggttgccaaaggggtttgaagagagaattatcggaaagaagaaggctatgattattaag 306  Q
    |||| |||  ||  | || | |||||||||||||| ||| |||||||| || || || ||||||||||  || ||||||||||| | | |||| |||| |    
T  48958377 gaaagggaaagaagacgagagtgaagaggagaaaggaaagtggttgccgaaaggattcgaagagagaaacattggaaagaagaaaggtttgatcattagg 48958278  T
Q  307 ggttgggctccaca 320  Q
    || ||||| |||||    
T  48958277 gggtgggccccaca 48958264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 3 - 327
Target Start/End: Complemental strand, 48965763 - 48965442
Alignment:
Q  3 aactattcaagagaaagcacagagaggagaagagagtgttgtgagtgtgcacgagtgtttgagttggcttaactcgaaacaagataactcggtggtgtac 102  Q
    |||| |||||||||||||| |||| ||| |||||||||  ||||| ||||| ||||||||||||||||| || || || | | ||||||| ||| |||||    
T  48965763 aactgttcaagagaaagcagagaggggacaagagagtgcagtgagcgtgcaagagtgtttgagttggctcaattccaagcgacataactcagtgttgtac 48965664  T
Q  103 atatgctttggaagccgatgtcatttttcggataaacaactttatgagattgcgtgcgggattgaagcatcgagtcacgaattcatatgggttgttcctg 202  Q
    ||| ||||||||||||  |||| || |  ||||||||| ||||||||||||||||| |  || ||||||||| |||| || || ||||||||| ||||      
T  48965663 ataagctttggaagcctctgtcgttatcaggataaacagctttatgagattgcgtgtgcaatagaagcatcgggtcatgattttatatgggttattcccc 48965564  T
Q  203 aaaagaaacggacggagcatgacaatgaagaggagaaagaaaaatggttgccaaaggggtttgaagagagaattatcggaaagaagaaggctatgattat 302  Q
      || ||  |||  ||| |||| | ||||||||||||  |||| ||||| |||||||| || ||||||||||  || |||   ||||||| | |||||||    
T  48965563 ttaataacgggaaagaggatgagagtgaagaggagaagcaaaagtggttaccaaagggattcgaagagagaaacattgga---aagaagggtttgattat 48965467  T
Q  303 taagggttgggctccacaggttctg 327  Q
    || |||||||||||| |||||||||    
T  48965466 taggggttgggctccgcaggttctg 48965442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 166 - 320
Target Start/End: Complemental strand, 48961567 - 48961413
Alignment:
Q  166 gaagcatcgagtcacgaattcatatgggttgttcctgaaaagaaacggacggagcatgacaatgaagaggagaaagaaaaatggttgccaaaggggtttg 265  Q
    ||||||||| ||||||||||  |||||||||||||||| || ||| |||  | | |||| |  |||||||||||||| || |||||||| || || ||||    
T  48961567 gaagcatcgggtcacgaatttgtatgggttgttcctgagaaaaaagggaaagtggatgagagcgaagaggagaaagacaagtggttgccgaaaggatttg 48961468  T
Q  266 aagagagaattatcggaaagaagaaggctatgattattaagggttgggctccaca 320  Q
    |||||||||  || | ||||||||||| | |||| |||||||| ||||| |||||    
T  48961467 aagagagaaacattgaaaagaagaagggtttgatcattaaggggtgggccccaca 48961413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 145 - 272
Target Start/End: Complemental strand, 48951526 - 48951399
Alignment:
Q  145 tatgagattgcgtgcgggattgaagcatcgagtcacgaattcatatgggttgttcctgaaaagaaacggacggagcatgacaatgaagaggagaaagaaa 244  Q
    |||||||||||  ||| ||| |||| |||  || | ||||||||||||||||| || ||||||||  ||| |||| | || | ||| |||||||| ||||    
T  48951526 tatgagattgcaagcgcgatagaagaatcaggttatgaattcatatgggttgtcccagaaaagaaggggaaggagaacgagagtgatgaggagaaggaaa 48951427  T
Q  245 aatggttgccaaaggggtttgaagagag 272  Q
    ||||||| || | || ||||||||||||    
T  48951426 aatggttacccagggagtttgaagagag 48951399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0536 (Bit Score: 154; Significance: 1e-81; HSPs: 2)
Name: scaffold0536
Description:

Target: scaffold0536; HSP #1
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 3 - 320
Target Start/End: Original strand, 6253 - 6570
Alignment:
Q  3 aactattcaagagaaagcacagagaggagaagagagtgttgtgagtgtgcacgagtgtttgagttggcttaactcgaaacaagataactcggtggtgtac 102  Q
    |||| ||||||| ||||||||||| ||| || | ||||||||||||||||| |||||| ||||||||||  ||||||| | ||||||||| ||| |||||    
T  6253 aactgttcaagaaaaagcacagaggggacaacaaagtgttgtgagtgtgcatgagtgtctgagttggctagactcgaagccagataactcagtgttgtac 6352  T
Q  103 atatgctttggaagccgatgtcatttttcggataaacaactttatgagattgcgtgcgggattgaagcatcgagtcacgaattcatatgggttgttcctg 202  Q
    |||||||||||||||  ||| | |||  |||||||||||||||| |||||||| || ||||| ||||||||| ||||| |||||||||||||||||||||    
T  6353 atatgctttggaagcttatgccttttcccggataaacaactttacgagattgcatgtgggatagaagcatcgggtcacaaattcatatgggttgttcctg 6452  T
Q  203 aaaagaaacggacggagcatgacaatgaagaggagaaagaaaaatggttgccaaaggggtttgaagagagaattatcggaaagaagaaggctatgattat 302  Q
    | |||||| |||  ||  |||| | |||||||||||||| |||||||||||||||||| || |||||||||| ||||||||||||||||| | |||||||    
T  6453 agaagaaagggaaagaagatgagagtgaagaggagaaaggaaaatggttgccaaagggattcgaagagagaaatatcggaaagaagaagggtttgattat 6552  T
Q  303 taagggttgggctccaca 320  Q
    || |||||||||||||||    
T  6553 taggggttgggctccaca 6570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0536; HSP #2
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 3 - 324
Target Start/End: Original strand, 10237 - 10556
Alignment:
Q  3 aactattcaagagaaagcacagagaggagaagagagtgttgtgagtgtgcacgagtgtttgagttggcttaactcgaaacaagataactcggtggtgtac 102  Q
    |||| ||||||||||| || ||||||||||| ||||||||||||||||||| |||||| ||||||||||||||| ||| | |||||  || ||| |||||    
T  10237 aactgttcaagagaaaacagagagaggagaacagagtgttgtgagtgtgcatgagtgtctgagttggcttaacttgaagcgagata--tcagtgttgtac 10334  T
Q  103 atatgctttggaagccgatgtcatttttcggataaacaactttatgagattgcgtgcgggattgaagcatcgagtcacgaattcatatgggttgttcctg 202  Q
    || ||||||||||||| |||| ||||||| ||||||||||||||||||||||||||| || | ||||||||| || |||||||  |||| ||||||||||    
T  10335 atttgctttggaagcctatgttatttttcagataaacaactttatgagattgcgtgcagggtagaagcatcgggttacgaatttgtatgagttgttcctg 10434  T
Q  203 aaaagaaacggacggagcatgacaatgaagaggagaaagaaaaatggttgccaaaggggtttgaagagagaattatcggaaagaagaaggctatgattat 302  Q
    | |||||| |||  ||| |||| | | |||||||||||||||||||| | || || || |||||||| ||| |||| | ||||||||||| | |||||||    
T  10435 agaagaaagggaaagagaatgagagtcaagaggagaaagaaaaatggctaccgaaaggatttgaagaaagagttattgcaaagaagaagggtttgattat 10534  T
Q  303 taagggttgggctccacaggtt 324  Q
    |||||||||||| || ||||||    
T  10535 taagggttgggcccctcaggtt 10556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 87; Significance: 1e-41; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 3 - 320
Target Start/End: Original strand, 12589911 - 12590231
Alignment:
Q  3 aactattcaagagaaagcacagagaggagaagagagtgttgtgagtgtgcacgagtgtttgagttggcttaactcgaaacaagataactcggtggtgtac 102  Q
    |||| |||||||||||||| | || ||| | |||||||||||||  ||||| |||||| |||||||||| |||||||| | ||||||||| ||| |||||    
T  12589911 aactgttcaagagaaagcagataggggaaatgagagtgttgtgaacgtgcaagagtgtctgagttggctaaactcgaagcgagataactctgtgttgtac 12590010  T
Q  103 atatgctttggaagccgatgtcatttttcggataaacaactttatgagattgcgtgcgggattgaagcatcgagtcacgaattcatatgggttgttcctg 202  Q
    ||||||||||| |||  |||  |||| || ||||||||||||||||||||| |||| || || ||||||||  | ||||||||| |||||||| |||| |    
T  12590011 atatgctttgggagcatatgctatttctcagataaacaactttatgagatttcgtgtggcatagaagcatcaggccacgaattcgtatgggttattcccg 12590110  T
Q  203 aaaagaaacggacggagcatgacaatgaagaggagaaagaaaaatggttgccaaaggggtttgaagagagaattatcg---gaaagaagaaggctatgat 299  Q
    | || ||| ||| |||  |||| | ||| ||||| ||| ||||||||||||| |  || |||||||||||||  || |   |||||||||||| | ||||    
T  12590111 agaaaaaagggaaggaagatgagagtgatgaggataaacaaaaatggttgcctagtggatttgaagagagaaacattgggagaaagaagaagggtttgat 12590210  T
Q  300 tattaagggttgggctccaca 320  Q
     |||| ||||||||| |||||    
T  12590211 cattaggggttgggccccaca 12590231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 3 - 274
Target Start/End: Original strand, 12483206 - 12483477
Alignment:
Q  3 aactattcaagagaaagcacagagaggagaagagagtgttgtgagtgtgcacgagtgtttgagttggcttaactcgaaacaagataactcggtggtgtac 102  Q
    |||| ||||||| || ||| |||| ||| | |||||||||||||| ||||| ||||||   |||||||| ||||| || ||||| || || ||| |||||    
T  12483206 aactgttcaagaaaaggcagagaggggaaacgagagtgttgtgagcgtgcatgagtgtcaaagttggctaaactcaaagcaagaaaattcagtgttgtac 12483305  T
Q  103 atatgctttggaagccgatgtcatttttcggataaacaactttatgagattgcgtgcgggattgaagcatcgagtcacgaattcatatgggttgttcctg 202  Q
    ||||||||||| |||| |||  |||| || |||||||| ||||| || ||| | ||||| || ||||||||| || |  |||||||||||||||||||||    
T  12483306 atatgctttgggagcctatgcaatttctctgataaacagctttacgaaatttcatgcggaatagaagcatcgggtaaaaaattcatatgggttgttcctg 12483405  T
Q  203 aaaagaaacggacggagcatgacaatgaagaggagaaagaaaaatggttgccaaaggggtttgaagagagaa 274  Q
    | || ||| ||| |||  |||| |  || |||||||||||||| |||||||| ||||| ||||| |||||||    
T  12483406 agaaaaaagggaaggaagatgagagcgatgaggagaaagaaaagtggttgccgaagggatttgaggagagaa 12483477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 64; Significance: 6e-28; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 7 - 274
Target Start/End: Complemental strand, 13440630 - 13440363
Alignment:
Q  7 attcaagagaaagcacagagaggagaagagagtgttgtgagtgtgcacgagtgtttgagttggcttaactcgaaacaagataactcggtggtgtacatat 106  Q
    ||||||||||||||| |||| ||| | ||| ||| |||||   ||||||| ||  ||||||||||  ||||  |  ||| |||||||||| |||||||||    
T  13440630 attcaagagaaagcagagaggggaaaggagggtgatgtgaacatgcacgaatgcatgagttggctcgactcagagaaagttaactcggtgttgtacatat 13440531  T
Q  107 gctttggaagccgatgtcatttttcggataaacaactttatgagattgcgtgcgggattgaagcatcgagtcacgaattcatatgggttgttcctgaaaa 206  Q
    | |||||||||       |||| || ||||||||||| |||||||| |||||||  || |||||||| ||||||  ||||||||||||||||||||| ||    
T  13440530 gttttggaagcatcaactatttctctgataaacaactatatgagatggcgtgcgcaatagaagcatctagtcacccattcatatgggttgttcctgagaa 13440431  T
Q  207 gaaacggacggagcatgacaatgaagaggagaaagaaaaatggttgccaaaggggtttgaagagagaa 274  Q
    |||| |||  ||  |||| | ||| || ||||||||||| |||||||||||||| || ||||||||||    
T  13440430 gaaagggaaagaagatgagagtgaggaagagaaagaaaagtggttgccaaagggattcgaagagagaa 13440363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 125 - 324
Target Start/End: Complemental strand, 13448675 - 13448479
Alignment:
Q  125 atttttcggataaacaactttatgagattgcgtgcgggattgaagcatcgagtcacgaattcatatgggttgttcctgaaaagaaacggacggagcatga 224  Q
    ||||||| ||||||||||| || ||||| || || | ||| ||||||||  |||||  ||||||||||||||||||||| |||||| |||  ||  ||||    
T  13448675 atttttctgataaacaactatacgagatggcatgtgcgatagaagcatccggtcacccattcatatgggttgttcctgagaagaaagggaaagaagatga 13448576  T
Q  225 caatgaagaggagaaagaaaaatggttgccaaaggggtttgaagagagaattatcggaaagaagaaggctatgattattaagggttgggctccacaggtt 324  Q
     |  ||||| ||||||||||| ||||| || ||||| ||||||||||||| ||||||   |||||||| | |||| |||| ||||||||| |||||||||    
T  13448575 gagcgaagaagagaaagaaaagtggttaccgaagggatttgaagagagaaatatcgg---gaagaagggtttgatcattaggggttgggccccacaggtt 13448479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 184 - 271
Target Start/End: Complemental strand, 13455087 - 13455000
Alignment:
Q  184 ttcatatgggttgttcctgaaaagaaacggacggagcatgacaatgaagaggagaaagaaaaatggttgccaaaggggtttgaagaga 271  Q
    ||||||||||||||||| || |||||| |||  ||  |||| |  |||||||||||| |||| |||||||| ||||| ||||||||||    
T  13455087 ttcatatgggttgttccggagaagaaagggaaagaagatgagagcgaagaggagaaacaaaagtggttgccgaagggatttgaagaga 13455000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 56; Significance: 4e-23; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 65 - 288
Target Start/End: Original strand, 3417334 - 3417557
Alignment:
Q  65 gttggcttaactcgaaacaagataactcggtggtgtacatatgctttggaagccgatgtcatttttcggataaacaactttatgagattgcgtgcgggat 164  Q
    ||||||| |||||  |||||| |||||| ||| |||||||||| |||||||||  |    |||| || ||||||||||| ||||||||||| | ||  ||    
T  3417334 gttggctcaactcacaacaagttaactcagtgttgtacatatgttttggaagcttaaactatttctctgataaacaactatatgagattgcatacgcaat 3417433  T
Q  165 tgaagcatcgagtcacgaattcatatgggttgttcctgaaaagaaacggacggagcatgacaatgaagaggagaaagaaaaatggttgccaaaggggttt 264  Q
     ||||||||| |||||  ||||||||||||||||| ||| |||||| | |  ||  |||| || ||||| ||||||||||| |||||||| ||||| |||    
T  3417434 agaagcatcgggtcacccattcatatgggttgttcttgagaagaaaggaaaagaagatgagaacgaagaagagaaagaaaagtggttgccgaagggattt 3417533  T
Q  265 gaagagagaattatcggaaagaag 288  Q
    || |||||||  || |||||||||    
T  3417534 gaggagagaaacattggaaagaag 3417557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 54; Significance: 6e-22; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 87 - 288
Target Start/End: Complemental strand, 28385684 - 28385483
Alignment:
Q  87 taactcggtggtgtacatatgctttggaagccgatgtcatttttcggataaacaactttatgagattgcgtgcgggattgaagcatcgagtcacgaattc 186  Q
    |||||| || ||||||||||| |||||||||  |   ||||| || ||||||||||| ||||||||||| ||||   | ||||||||  |||||  ||||    
T  28385684 taactcagttgtgtacatatgttttggaagcataaaccatttctctgataaacaactatatgagattgcatgcgcagtagaagcatcaggtcacccattc 28385585  T
Q  187 atatgggttgttcctgaaaagaaacggacggagcatgacaatgaagaggagaaagaaaaatggttgccaaaggggtttgaagagagaattatcggaaaga 286  Q
    ||||||||||||||||| |||||| |||  ||  |||| |  ||||| ||||||||||| ||| |||||||||| ||||| |||||||  || |||||||    
T  28385584 atatgggttgttcctgagaagaaagggaaagaagatgagatcgaagaagagaaagaaaagtggctgccaaagggatttgaggagagaaacattggaaaga 28385485  T
Q  287 ag 288  Q
    ||    
T  28385484 ag 28385483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 82 - 274
Target Start/End: Complemental strand, 12541040 - 12540848
Alignment:
Q  82 caagataactcggtggtgtacatatgctttggaagccgatgtcatttttcggataaacaactttatgagattgcgtgcgggattgaagcatcgagtcacg 181  Q
    |||| |||||| |||||||||||||| |||||||||  |  |||||| |  || |||||||| ||||||||||| || |   | |||| |  | |||||     
T  12541040 caagttaactcagtggtgtacatatgttttggaagcataaatcatttctttgacaaacaactatatgagattgcatgtgcagtagaaggaatgggtcacc 12540941  T
Q  182 aattcatatgggttgttcctgaaaagaaacggacggagcatgacaatgaagaggagaaagaaaaatggttgccaaaggggtttgaagagagaa 274  Q
     ||||||||||||||||||||| |||| | |||  ||  |||| | |||||| ||||||||||| ||| |||| ||||| ||||| |||||||    
T  12540940 cattcatatgggttgttcctgagaagagagggaaagaagatgagactgaagaagagaaagaaaagtggatgccgaagggatttgaggagagaa 12540848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 133 - 274
Target Start/End: Original strand, 12641353 - 12641494
Alignment:
Q  133 gataaacaactttatgagattgcgtgcgggattgaagcatcgagtcacgaattcatatgggttgttcctgaaaagaaacggacggagcatgacaatgaag 232  Q
    |||||||||||||| ||||||||| |||| || |||   ||  ||||||||||  |||||||||||||||| |||||| |||   |  |||| | |||||    
T  12641353 gataaacaactttacgagattgcgagcggaatagaaaattcaggtcacgaatttgtatgggttgttcctgagaagaaagggaaaaaagatgagagtgaag 12641452  T
Q  233 aggagaaagaaaaatggttgccaaaggggtttgaagagagaa 274  Q
    ||||||||||||| |||||||| || || || ||||||||||    
T  12641453 aggagaaagaaaagtggttgcctaaaggattcgaagagagaa 12641494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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