View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17793_low_62 (Length: 334)
Name: NF17793_low_62
Description: NF17793
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17793_low_62 |
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| [»] scaffold0172 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 305; Significance: 1e-172; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 305; E-Value: 1e-172
Query Start/End: Original strand, 18 - 326
Target Start/End: Complemental strand, 53415829 - 53415521
Alignment:
| Q |
18 |
gtacgatacatagatcacaatcacacattacacttgataattataatgtccaaagatgttaaggaagctgtttattacgcttcagtttcaagttcttttt |
117 |
Q |
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| T |
53415829 |
gtacgatacatagatcacaatcacacattacacttgataattataatgtccaaagatgttaaggaagctgtttattacgcttcagtttcaagttcttttt |
53415730 |
T |
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| Q |
118 |
gttcttcccatccgaactcgttagaggtggcttttcttttcttttcttgccctttccaaatctattttcagcttcttcaaatcagcctacaattaaaaag |
217 |
Q |
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| T |
53415729 |
gttcttcccatccgaactcgttagaggtggcttttcttatcttttcttgccctttccaaatctattttcagcttcttcaaatcagcctacaattaaaaag |
53415630 |
T |
|
| Q |
218 |
caagttagctccaagtatatgtttgcatgctctctaaatttaaaacaaaatgagccagtgacaagaaattcattcacaccaaggcttccaaattctaaag |
317 |
Q |
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| T |
53415629 |
caagttagctccaagtatatgtttgcatgctctctaaatttaaaacaaaatgagccagtgacaagaaattcattcacaccaaggcttccaaattctaaag |
53415530 |
T |
|
| Q |
318 |
agtattatc |
326 |
Q |
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||||||||| |
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| T |
53415529 |
agtattatc |
53415521 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 43 - 326
Target Start/End: Complemental strand, 53412072 - 53411792
Alignment:
| Q |
43 |
cattacacttgataattataatgtccaaagatgttaaggaagctgtttattacgcttca-gtttcaagttctttttgttcttcccatccgaactcgttag |
141 |
Q |
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| T |
53412072 |
cattatacttgataattataatgtgtaaagatactaaggaagctgtatattacgcttcaggattcaagttcctt---ttcttcccgtccgaactcgttag |
53411976 |
T |
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| Q |
142 |
aggtggcttttcttttcttttcttgccctttccaaatctattttcagcttcttcaaatcagcctacaattaaaaagcaagttagctccaagtatatgttt |
241 |
Q |
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| T |
53411975 |
aggtg-----aattttcttttcttgcccttttcaaatctattttcagctccctcaaagaagcctacaattaaaaagcaagtaaaatccaagtatatgtct |
53411881 |
T |
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| Q |
242 |
gcatgctctctaaatt----taaaacaaaatgagccagtgacaagaaattcattcacaccaaggcttccaaattctaaagagtattatc |
326 |
Q |
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| T |
53411880 |
acatgccctctaaattaaaataaaataaaatgagccagtgacgagaaattcatttacaccaaggtttccaaactctaaatagtattatc |
53411792 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 51 - 326
Target Start/End: Original strand, 53366748 - 53367018
Alignment:
| Q |
51 |
ttgataattataatgtccaaagatgttaaggaagctgtttattacgcttcagt-ttcaagttctttttgttcttcccatccgaactcgttagaggtggct |
149 |
Q |
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| T |
53366748 |
ttgataattataatgtgtaaagatactaaggaaggtgtatattacgcttcaggattcaagttcctttt---cttcccgtccgaactcgttagaggtg--- |
53366841 |
T |
|
| Q |
150 |
tttcttttcttttcttgccctttccaaatctattttcagcttcttcaaatcagcctacaattaaaaagcaagttagctccaagtatatgtttgcatgctc |
249 |
Q |
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| T |
53366842 |
--acttttcttttcttgcctttttcaaatctattttcagctccctcagaaaagcctaaaattaaaaagcaagtcagatccaagaatatg-ttacatgccc |
53366938 |
T |
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| Q |
250 |
tctaaatt---taaaacaaaatgagccagtgacaagaaattcattcacaccaaggcttccaaattctaaagagtattatc |
326 |
Q |
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||||||| |||| |||||||||||||||||||||||||||| ||||||||| |||||||||||||| ||||||||| |
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| T |
53366939 |
actaaattaaaaaaaataaaatgagccagtgacaagaaattcatttacaccaaggtttccaaattctaaatagtattatc |
53367018 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 77 - 312
Target Start/End: Complemental strand, 53318534 - 53318300
Alignment:
| Q |
77 |
taaggaagctgtttattacgcttcagt-ttcaagttctttttgttcttcccatccgaactcgttagaggtggcttttcttttcttttcttgccctttcca |
175 |
Q |
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|||||||||||| ||||||||||||| || |||||| | ||| ||||| ||||||| | ||||||||||||||| |||| || |||||||| | |
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| T |
53318534 |
taaggaagctgtatattacgcttcaggattaaagttcctcctgtccttcctgtccgaacactttagaggtggcttttgttttttt-----gccctttcta |
53318440 |
T |
|
| Q |
176 |
aatctattttcagcttcttcaaatcagcctacaattaaaaagca----agttagctccaagtatatgtttgcatgctctctaaatttaaaacaaaatgag |
271 |
Q |
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| T |
53318439 |
aatctattttcagctccttctaatttgcctacaattaaaaagtaagacagctagctctaagtatatggtt-ttttccctctaaatttcaaataatacaag |
53318341 |
T |
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| Q |
272 |
ccagtgacaagaaattcattcacaccaaggcttccaaattc |
312 |
Q |
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|||||||| |||||| |||||||||| ||| |||||||||| |
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| T |
53318340 |
ccagtgacgagaaatccattcacacccaggtttccaaattc |
53318300 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 62; Significance: 9e-27; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 158 - 326
Target Start/End: Complemental strand, 14923115 - 14922949
Alignment:
| Q |
158 |
cttttcttgccctttccaaatctattttcagcttcttcaaatcagcctacaattaaaaagcaagttagctccaagtatatgtttgcatgctctctaaatt |
257 |
Q |
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||||| ||||||| || ||||| ||||||||| ||||||| |||||||||||| |||| || |||| | ||||||||||| ||||| ||||||||| |
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| T |
14923115 |
ctttttttgccctgtcgtaatctgttttcagctccttcaaaagagcctacaattacaaagt--gtcagcttcgagtatatgtttacatgccctctaaatt |
14923018 |
T |
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| Q |
258 |
taaaacaaaatgagccagtgacaagaaattcattcacaccaaggcttccaaattctaaagagtattatc |
326 |
Q |
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| T |
14923017 |
tcaaacaaaatgagccggtgaggagaaattgatccacaccatggtttccaaattctaaagaatattatc |
14922949 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0172 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0172
Description:
Target: scaffold0172; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 158 - 209
Target Start/End: Original strand, 2793 - 2844
Alignment:
| Q |
158 |
cttttcttgccctttccaaatctattttcagcttcttcaaatcagcctacaa |
209 |
Q |
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|||| |||||||| |||||||||| |||||||| ||||| |||||||||||| |
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| T |
2793 |
ctttccttgccctgtccaaatctactttcagctccttcagatcagcctacaa |
2844 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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