View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17793_low_74 (Length: 295)
Name: NF17793_low_74
Description: NF17793
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17793_low_74 |
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Alignment Details
Target: chr3 (Bit Score: 183; Significance: 5e-99; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 183; E-Value: 5e-99
Query Start/End: Original strand, 20 - 233
Target Start/End: Original strand, 1935947 - 1936163
Alignment:
| Q |
20 |
ttcggcacatataataagcactacatacatgattagagtacatactaatatgctaaaattgtgtttttacctatattttagcacctaattactaaaactt |
119 |
Q |
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| T |
1935947 |
ttcggcacatataataagcactacatacatgattagagtacatactaatatgctaaaattatgtttttgcctatattttagcacctaattactaaaactt |
1936046 |
T |
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| Q |
120 |
---ttcagaaacaaagtaagggaaccaacaaggtttaataacctggaaagctatgttccctatcctttaggaaatgggcacctaaactctaaacttgcac |
216 |
Q |
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| T |
1936047 |
agtttcagaaacaaagtaagggaaccaacaaggtataataacctggaaagctatgttccctatcccttaggaaatgggcacctaaactctaaacttgcac |
1936146 |
T |
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| Q |
217 |
aatatcctaaatattct |
233 |
Q |
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|||||||||||| |||| |
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| T |
1936147 |
aatatcctaaattttct |
1936163 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 30 - 119
Target Start/End: Original strand, 1929737 - 1929829
Alignment:
| Q |
30 |
ataataagcactacatacatgattagagtacatacta---atatgctaaaattgtgtttttacc-tatattttagcacctaattactaaaactt |
119 |
Q |
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|||||||||||||| || ||||||||||||| ||||| || |||| |||||||||||||||| ||||||| ||||| ||||||||||||||| |
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| T |
1929737 |
ataataagcactacttaaatgattagagtac-tactaattatgtgctgaaattgtgtttttaccttatatttcagcacataattactaaaactt |
1929829 |
T |
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