View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17793_low_75 (Length: 294)
Name: NF17793_low_75
Description: NF17793
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17793_low_75 |
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| [»] scaffold0020 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 261; Significance: 1e-145; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 18 - 278
Target Start/End: Original strand, 20865481 - 20865741
Alignment:
| Q |
18 |
gcgtagtgtactgacagcttccaatcaagcccaattgttttggtcggtcaggcccggattctaaaatttctatgaaactataatcacattaaagtagaga |
117 |
Q |
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| T |
20865481 |
gcgtagtgtactgacagcttccaatcaagcccaattgttttggtcggtcaggcccggattctaaaatttctatgaaactataatcacattaaagtagaga |
20865580 |
T |
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| Q |
118 |
ataaaagatgcaatatctcaaattaattgataagagtatactcgtcagaatcaaatccataaaagtagtctggcatacctgcaatttgtcctctgtgaaa |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20865581 |
ataaaagatgcaatatctcaaattaattgataagagtatactcgtcagaatcaaatccataaaagtagtctggcatacctgcaatttgtcctctgtgaaa |
20865680 |
T |
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| Q |
218 |
tagtgatttactggaagtttacggatttcctctgtcaaacggaagcattcaccgacatttt |
278 |
Q |
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| T |
20865681 |
tagtgatttactggaagtttacggatttcctctgtcaaacggaagcattcaccgacatttt |
20865741 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 164 - 278
Target Start/End: Complemental strand, 27401464 - 27401353
Alignment:
| Q |
164 |
agaatcaaatccataaaagtagtctggcatacctgcaatttgtcctctgtgaaatagtgatttactggaagtttacggatttcctctgtcaaacggaagc |
263 |
Q |
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| T |
27401464 |
agaatcaaatccataa---tagtctggcatacctccaatttgtcctctatggacctgtgatttactggaagtttgcggaattcctctgtcaaacggaagc |
27401368 |
T |
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| Q |
264 |
attcaccgacatttt |
278 |
Q |
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| T |
27401367 |
actcaccaacatttt |
27401353 |
T |
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Target: scaffold0020 (Bit Score: 92; Significance: 1e-44; HSPs: 1)
Name: scaffold0020
Description:
Target: scaffold0020; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 117 - 264
Target Start/End: Original strand, 134332 - 134479
Alignment:
| Q |
117 |
aataaaagatgcaatatctcaaattaattgataagagtatactcgtcagaatcaaatccataaaagtagtctggcatacctgcaatttgtcctctgtgaa |
216 |
Q |
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||||||||||||||||||| ||||||||||| |||||||||| |||||||||||||||| ||||| |||||||||||||| ||| ||||| |||| | |
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| T |
134332 |
aataaaagatgcaatatctaaaattaattgacaagagtatacatgtcagaatcaaatccagaaaagcagtctggcatacctccaaattgtctgctgttga |
134431 |
T |
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| Q |
217 |
atagtgatttactggaagtttacggatttcctctgtcaaacggaagca |
264 |
Q |
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| T |
134432 |
acagtgatttactggaagtttacggatttcctctgtcaaacgcaagca |
134479 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 191 - 278
Target Start/End: Complemental strand, 51506942 - 51506855
Alignment:
| Q |
191 |
catacctgcaatttgtcctctgtgaaatagtgatttactggaagtttacggatttcctctgtcaaacggaagcattcaccgacatttt |
278 |
Q |
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| T |
51506942 |
catacctccaatttgtcctctgtggacctgtgatttaccggaagtttacggaattcctctgtcaaacgaaagcactcaccaacatttt |
51506855 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 192 - 278
Target Start/End: Original strand, 30200115 - 30200201
Alignment:
| Q |
192 |
atacctgcaatttgtcctctgtgaaatagtgatttactggaagtttacggatttcctctgtcaaacggaagcattcaccgacatttt |
278 |
Q |
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| T |
30200115 |
atacctccaatttgtcctctgcagacttgtgatttactggaagtttgcggaattcctctgtcaaacgaaagcactcgccaacatttt |
30200201 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 183 - 270
Target Start/End: Complemental strand, 5178958 - 5178871
Alignment:
| Q |
183 |
tagtctggcatacctgcaatttgtcctctgtgaaatagtgatttactggaagtttacggatttcctctgtcaaacggaagcattcacc |
270 |
Q |
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||||||||||||||| ||||||||||||| || | ||||||||||| |||||| |||| ||||||||||||| ||||||| ||||| |
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| T |
5178958 |
tagtctggcatacctccaatttgtcctctatggacctgtgatttactgtaagtttccggaattcctctgtcaaatggaagcactcacc |
5178871 |
T |
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